Wall clock time and date at job start Tue Mar 31 2020 23:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00324 * 2 1 4 4 H 1.09007 * 109.98689 * 358.91141 * 3 2 1 5 5 O 1.43751 * 109.87588 * 237.83205 * 3 2 1 6 6 C 1.44372 * 106.97254 * 267.08111 * 5 3 2 7 7 C 1.55225 * 103.57192 * 320.01522 * 6 5 3 8 8 C 1.54095 * 109.88450 * 119.99933 * 3 2 1 9 9 H 1.09000 * 110.48617 * 358.58279 * 8 3 2 10 10 C 1.50704 * 110.48510 * 236.07388 * 8 3 2 11 11 O 1.21279 * 120.00204 * 1.83753 * 10 8 3 12 12 N 1.34778 * 119.99775 * 181.84159 * 10 8 3 13 13 C 1.46497 * 119.99968 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.47004 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.46688 * 294.99517 * 14 13 12 16 16 C 1.53004 * 109.46773 * 175.00117 * 14 13 12 17 17 C 1.52998 * 109.47265 * 65.62236 * 16 14 13 18 18 N 1.46896 * 109.47337 * 54.99853 * 14 13 12 19 19 C 1.46899 * 110.99940 * 206.26572 * 18 14 13 20 20 C 1.50703 * 109.47190 * 174.55660 * 19 18 14 21 21 O 1.21290 * 119.99719 * 359.97438 * 20 19 18 22 22 N 1.34777 * 120.00053 * 179.97438 * 20 19 18 23 23 C 1.37100 * 120.00021 * 179.72564 * 22 20 19 24 24 H 1.07996 * 119.99815 * 0.27325 * 23 22 20 25 25 C 1.38947 * 120.00036 * 180.27852 * 23 22 20 26 26 N 1.31412 * 119.99770 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00148 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47042 * 359.97438 * 27 25 23 29 29 H 1.48507 * 109.47192 * 119.99502 * 27 25 23 30 30 H 1.48495 * 109.47184 * 239.99742 * 27 25 23 31 31 H 1.08001 * 120.00119 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99941 * 0.02562 * 1 2 3 33 33 H 1.08006 * 120.00274 * 179.97438 * 2 1 3 34 34 H 1.09002 * 110.61525 * 78.44212 * 6 5 3 35 35 H 1.09002 * 110.62199 * 201.28184 * 6 5 3 36 36 H 1.08994 * 110.89063 * 278.75103 * 7 6 5 37 37 H 1.08995 * 111.02519 * 155.06825 * 7 6 5 38 38 H 0.97005 * 119.99685 * 0.02562 * 12 10 8 39 39 H 1.08997 * 109.47264 * 60.00092 * 13 12 10 40 40 H 1.09001 * 109.47229 * 299.99587 * 13 12 10 41 41 H 1.09001 * 109.46515 * 185.61589 * 16 14 13 42 42 H 1.08996 * 109.46919 * 305.61734 * 16 14 13 43 43 H 1.09000 * 109.47255 * 54.37515 * 17 16 14 44 44 H 1.08995 * 109.47317 * 174.37861 * 17 16 14 45 45 H 1.08998 * 109.46821 * 294.37506 * 17 16 14 46 46 H 1.00898 * 110.99823 * 82.31281 * 18 14 13 47 47 H 1.09001 * 109.47310 * 54.55304 * 19 18 14 48 48 H 1.09008 * 109.46942 * 294.55717 * 19 18 14 49 49 H 0.97008 * 119.99873 * 359.97438 * 22 20 19 50 50 H 0.97008 * 119.99996 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3629 2.1399 -0.0195 5 8 2.9312 1.3684 -1.1444 6 6 4.2186 0.8669 -0.7254 7 6 4.3958 1.4617 0.6974 8 6 2.9530 1.3967 1.2549 9 1 2.8246 0.5122 1.8789 10 6 2.6334 2.6440 2.0381 11 8 1.7517 3.3869 1.6620 12 7 3.3276 2.9339 3.1564 13 6 3.0173 4.1466 3.9173 14 6 3.9441 4.2380 5.1314 15 1 3.7364 3.4107 5.8100 16 6 3.7059 5.5643 5.8561 17 6 2.2921 5.5792 6.4409 18 7 5.3423 4.1673 4.6865 19 6 6.2066 3.6366 5.7492 20 6 7.6040 3.4532 5.2155 21 8 7.8550 3.7363 4.0631 22 7 8.5747 2.9746 6.0187 23 6 9.8446 2.8024 5.5315 24 1 10.0682 3.0545 4.5055 25 6 10.8441 2.3036 6.3580 26 7 10.5721 1.9973 7.6066 27 14 12.5741 2.0684 5.6941 28 1 12.6183 2.4841 4.2691 29 1 13.5232 2.8960 6.4813 30 1 12.9562 0.6376 5.8039 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 4.2118 -0.2224 -0.6860 35 1 5.0042 1.2207 -1.3930 36 1 4.7471 2.4922 0.6468 37 1 5.0717 0.8505 1.2953 38 1 4.0332 2.3399 3.4569 39 1 1.9810 4.1099 4.2529 40 1 3.1631 5.0209 3.2829 41 1 4.4330 5.6743 6.6606 42 1 3.8162 6.3884 5.1513 43 1 2.1492 4.6994 7.0683 44 1 2.1565 6.4791 7.0407 45 1 1.5635 5.5696 5.6303 46 1 5.6678 5.0692 4.3724 47 1 5.8180 2.6761 6.0879 48 1 6.2258 4.3359 6.5851 49 1 8.3740 2.7485 6.9404 50 1 11.2699 1.6494 8.1837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481851050.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:05 Heat of formation + Delta-G solvation = -107.147522 kcal Electronic energy + Delta-G solvation = -29811.523166 eV Core-core repulsion = 25645.800210 eV Total energy + Delta-G solvation = -4165.722956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.62119 -38.96662 -38.34247 -37.22805 -34.25507 -33.96952 -33.83961 -32.61080 -32.29230 -31.25193 -28.91940 -28.27360 -26.24886 -24.54120 -23.57519 -23.20575 -22.35305 -20.92100 -20.14725 -19.91199 -19.32934 -17.97423 -17.52458 -16.77946 -16.38770 -16.05215 -15.94759 -15.45637 -15.21140 -14.96695 -14.85493 -14.53323 -14.07301 -13.93900 -13.90108 -13.67394 -13.40124 -13.28144 -13.09454 -12.80373 -12.34602 -12.22766 -12.18766 -11.97244 -11.78144 -11.62696 -11.55774 -11.48181 -11.44643 -11.28832 -11.10551 -11.07516 -10.80028 -10.38971 -10.27860 -9.91139 -9.88969 -9.57611 -9.57237 -9.00562 -8.58365 -8.14206 -8.01919 -6.47496 -3.88395 1.95696 2.59633 3.11960 3.13622 3.23193 3.29991 3.84185 3.88291 3.98117 4.22986 4.31722 4.45843 4.53495 4.65612 4.75573 4.92128 4.94555 4.99170 5.00444 5.08256 5.12292 5.15794 5.23701 5.28615 5.30582 5.52772 5.55234 5.58997 5.60855 5.65765 5.71123 5.77494 5.80881 5.83511 5.85121 5.91196 5.97966 6.05172 6.20446 6.32437 6.45785 6.51894 6.72087 7.06297 7.49845 7.50041 7.55849 8.00550 8.21425 8.55090 9.12496 9.48349 9.99493 10.70193 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009672 B = 0.002714 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.240582 B =10315.594844 C =12613.358033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.176 4.176 3 C 0.113 3.887 4 H 0.120 0.880 5 O -0.363 6.363 6 C 0.045 3.955 7 C -0.144 4.144 8 C -0.137 4.137 9 H 0.110 0.890 10 C 0.523 3.477 11 O -0.548 6.548 12 N -0.707 5.707 13 C 0.133 3.867 14 C 0.072 3.928 15 H 0.084 0.916 16 C -0.152 4.152 17 C -0.151 4.151 18 N -0.662 5.662 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.581 6.581 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.410 0.590 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.352 0.648 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 -1.757 -5.117 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C 0.055 3.945 4 H 0.137 0.863 5 O -0.282 6.282 6 C -0.032 4.032 7 C -0.182 4.182 8 C -0.159 4.159 9 H 0.128 0.872 10 C 0.309 3.691 11 O -0.427 6.427 12 N -0.358 5.358 13 C 0.009 3.991 14 C -0.039 4.039 15 H 0.102 0.898 16 C -0.192 4.192 17 C -0.209 4.209 18 N -0.294 5.294 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.465 6.465 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.246 0.754 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.172 0.828 47 H 0.103 0.897 48 H 0.063 0.937 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.210 -1.636 -6.527 19.413 hybrid contribution 1.337 0.000 1.548 2.045 sum -16.873 -1.636 -4.979 17.668 Atomic orbital electron populations 1.23902 0.95812 1.02166 0.98857 1.23323 0.96468 0.98462 1.01153 1.21882 0.92242 0.96639 0.83758 0.86265 1.88975 1.21551 1.84848 1.32847 1.23633 0.86342 0.98261 0.94935 1.23201 0.94239 1.03952 0.96781 1.22673 0.97354 0.97903 0.97962 0.87228 1.20180 0.81452 0.86819 0.80671 1.90658 1.32347 1.51063 1.68592 1.45764 1.38139 1.26068 1.25820 1.21375 0.97737 0.87741 0.92252 1.21946 0.89400 0.97614 0.94924 0.89800 1.22223 0.98185 0.98164 1.00607 1.21773 0.96378 1.01833 1.00922 1.60119 0.99820 1.33222 1.36227 1.21730 0.93501 1.00292 0.92788 1.19793 0.85873 0.84600 0.87195 1.90535 1.82539 1.55364 1.18035 1.41884 1.08656 1.56669 1.12884 1.19736 0.84500 1.40020 0.98551 0.87883 1.25261 1.00335 0.97106 0.95247 1.69618 1.34696 1.44354 1.05626 0.85813 0.81573 0.77896 0.79152 1.19200 1.20757 1.20729 0.88160 0.88145 0.87182 0.91988 0.88464 0.89397 0.88793 0.75360 0.91231 0.91578 0.91314 0.91299 0.92576 0.92697 0.92353 0.82776 0.89698 0.93716 0.77526 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 14.32 29.02 0.42 -1.09 16 2 C -0.18 -1.72 8.87 -36.02 -0.32 -2.04 16 3 C 0.11 1.32 3.45 -27.31 -0.09 1.23 16 4 H 0.12 1.62 6.11 -51.93 -0.32 1.30 16 5 O -0.36 -4.69 11.18 -35.23 -0.39 -5.09 16 6 C 0.04 0.46 7.66 38.34 0.29 0.75 16 7 C -0.14 -1.52 6.69 -24.60 -0.16 -1.68 16 8 C -0.14 -1.48 3.05 -90.24 -0.28 -1.75 16 9 H 0.11 0.97 7.69 -51.93 -0.40 0.57 16 10 C 0.52 6.78 7.03 -10.98 -0.08 6.70 16 11 O -0.55 -8.79 15.26 5.56 0.08 -8.71 16 12 N -0.71 -8.28 5.35 -60.29 -0.32 -8.60 16 13 C 0.13 1.48 5.02 -4.04 -0.02 1.46 16 14 C 0.07 0.75 2.21 -67.71 -0.15 0.60 16 15 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 16 C -0.15 -1.41 5.38 -26.73 -0.14 -1.55 16 17 C -0.15 -1.20 9.54 37.16 0.35 -0.85 16 18 N -0.66 -9.06 5.23 -107.98 -0.56 -9.62 16 19 C 0.05 0.76 5.99 -4.97 -0.03 0.73 16 20 C 0.44 9.62 7.83 -10.98 -0.09 9.53 16 21 O -0.58 -14.79 15.90 5.55 0.09 -14.71 16 22 N -0.56 -13.55 5.29 -10.96 -0.06 -13.61 16 23 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 24 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -23.85 13.05 55.50 0.72 -23.12 16 27 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 28 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 29 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 30 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 31 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.10 0.90 7.85 -52.49 -0.41 0.49 16 33 H 0.11 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.41 4.66 8.14 -40.82 -0.33 4.33 16 39 H 0.07 0.74 6.96 -51.93 -0.36 0.38 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.67 7.52 -51.93 -0.39 0.28 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.46 6.98 -51.93 -0.36 0.10 16 46 H 0.35 5.20 8.36 -39.29 -0.33 4.87 16 47 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 48 H 0.04 0.63 7.56 -51.92 -0.39 0.24 16 49 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 50 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 411.49 15.07 6.20 6.20 Total: -1.00 -31.87 411.49 -7.96 -39.83 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -8.15 Total: 17.59 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.54 Total: 4.36 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.22 Total: -54.95 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.22 Total: -28.50 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.87 -7.96 -39.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481851050.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.322 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds