Wall clock time and date at job start Tue Mar 31 2020 23:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00324 * 2 1 4 4 H 1.09007 * 109.98689 * 358.91141 * 3 2 1 5 5 O 1.43751 * 109.87588 * 237.83205 * 3 2 1 6 6 C 1.44372 * 106.97254 * 267.08111 * 5 3 2 7 7 C 1.55225 * 103.57192 * 320.01522 * 6 5 3 8 8 C 1.54095 * 109.88450 * 119.99933 * 3 2 1 9 9 H 1.09000 * 110.48617 * 358.58279 * 8 3 2 10 10 C 1.50704 * 110.48510 * 236.07388 * 8 3 2 11 11 O 1.21279 * 120.00204 * 1.83753 * 10 8 3 12 12 N 1.34778 * 119.99775 * 181.84159 * 10 8 3 13 13 C 1.46497 * 119.99968 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.47004 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.46688 * 294.99517 * 14 13 12 16 16 C 1.53004 * 109.46773 * 175.00117 * 14 13 12 17 17 C 1.52998 * 109.47265 * 65.62236 * 16 14 13 18 18 N 1.46896 * 109.47337 * 54.99853 * 14 13 12 19 19 C 1.46899 * 110.99940 * 206.26572 * 18 14 13 20 20 C 1.50703 * 109.47190 * 174.55660 * 19 18 14 21 21 O 1.21290 * 119.99719 * 359.97438 * 20 19 18 22 22 N 1.34777 * 120.00053 * 179.97438 * 20 19 18 23 23 C 1.37100 * 120.00021 * 179.72564 * 22 20 19 24 24 H 1.07996 * 119.99815 * 0.27325 * 23 22 20 25 25 C 1.38947 * 120.00036 * 180.27852 * 23 22 20 26 26 N 1.31412 * 119.99770 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00148 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47042 * 359.97438 * 27 25 23 29 29 H 1.48507 * 109.47192 * 119.99502 * 27 25 23 30 30 H 1.48495 * 109.47184 * 239.99742 * 27 25 23 31 31 H 1.08001 * 120.00119 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99941 * 0.02562 * 1 2 3 33 33 H 1.08006 * 120.00274 * 179.97438 * 2 1 3 34 34 H 1.09002 * 110.61525 * 78.44212 * 6 5 3 35 35 H 1.09002 * 110.62199 * 201.28184 * 6 5 3 36 36 H 1.08994 * 110.89063 * 278.75103 * 7 6 5 37 37 H 1.08995 * 111.02519 * 155.06825 * 7 6 5 38 38 H 0.97005 * 119.99685 * 0.02562 * 12 10 8 39 39 H 1.08997 * 109.47264 * 60.00092 * 13 12 10 40 40 H 1.09001 * 109.47229 * 299.99587 * 13 12 10 41 41 H 1.09001 * 109.46515 * 185.61589 * 16 14 13 42 42 H 1.08996 * 109.46919 * 305.61734 * 16 14 13 43 43 H 1.09000 * 109.47255 * 54.37515 * 17 16 14 44 44 H 1.08995 * 109.47317 * 174.37861 * 17 16 14 45 45 H 1.08998 * 109.46821 * 294.37506 * 17 16 14 46 46 H 1.00898 * 110.99823 * 82.31281 * 18 14 13 47 47 H 1.09001 * 109.47310 * 54.55304 * 19 18 14 48 48 H 1.09008 * 109.46942 * 294.55717 * 19 18 14 49 49 H 0.97008 * 119.99873 * 359.97438 * 22 20 19 50 50 H 0.97008 * 119.99996 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3629 2.1399 -0.0195 5 8 2.9312 1.3684 -1.1444 6 6 4.2186 0.8669 -0.7254 7 6 4.3958 1.4617 0.6974 8 6 2.9530 1.3967 1.2549 9 1 2.8246 0.5122 1.8789 10 6 2.6334 2.6440 2.0381 11 8 1.7517 3.3869 1.6620 12 7 3.3276 2.9339 3.1564 13 6 3.0173 4.1466 3.9173 14 6 3.9441 4.2380 5.1314 15 1 3.7364 3.4107 5.8100 16 6 3.7059 5.5643 5.8561 17 6 2.2921 5.5792 6.4409 18 7 5.3423 4.1673 4.6865 19 6 6.2066 3.6366 5.7492 20 6 7.6040 3.4532 5.2155 21 8 7.8550 3.7363 4.0631 22 7 8.5747 2.9746 6.0187 23 6 9.8446 2.8024 5.5315 24 1 10.0682 3.0545 4.5055 25 6 10.8441 2.3036 6.3580 26 7 10.5721 1.9973 7.6066 27 14 12.5741 2.0684 5.6941 28 1 12.6183 2.4841 4.2691 29 1 13.5232 2.8960 6.4813 30 1 12.9562 0.6376 5.8039 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 4.2118 -0.2224 -0.6860 35 1 5.0042 1.2207 -1.3930 36 1 4.7471 2.4922 0.6468 37 1 5.0717 0.8505 1.2953 38 1 4.0332 2.3399 3.4569 39 1 1.9810 4.1099 4.2529 40 1 3.1631 5.0209 3.2829 41 1 4.4330 5.6743 6.6606 42 1 3.8162 6.3884 5.1513 43 1 2.1492 4.6994 7.0683 44 1 2.1565 6.4791 7.0407 45 1 1.5635 5.5696 5.6303 46 1 5.6678 5.0692 4.3724 47 1 5.8180 2.6761 6.0879 48 1 6.2258 4.3359 6.5851 49 1 8.3740 2.7485 6.9404 50 1 11.2699 1.6494 8.1837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481851050.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:03 Heat of formation + Delta-G solvation = -131.282649 kcal Electronic energy + Delta-G solvation = -29812.569744 eV Core-core repulsion = 25645.800210 eV Total energy + Delta-G solvation = -4166.769534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.57334 -40.24897 -39.65229 -38.38998 -35.95383 -35.16339 -34.66619 -33.68293 -33.19878 -33.11820 -29.82153 -29.25874 -27.68628 -25.93359 -24.69203 -24.02334 -23.22588 -21.83873 -21.08666 -20.93566 -20.79658 -19.88106 -18.50865 -17.85929 -17.51365 -17.16771 -16.93494 -16.59238 -16.51068 -16.31411 -15.94382 -15.87484 -15.51748 -15.10312 -14.84992 -14.69962 -14.49025 -14.34881 -14.01416 -13.86459 -13.58247 -13.42539 -13.33844 -13.16433 -12.92249 -12.81460 -12.58406 -12.54750 -12.45485 -12.37217 -12.24245 -12.11151 -12.07956 -11.91875 -11.59397 -11.47998 -10.92144 -10.70771 -10.37993 -10.30480 -10.01368 -9.97635 -9.31412 -8.44687 -5.92377 1.23730 1.37495 1.43400 1.56533 1.57672 2.10355 2.19505 2.30243 2.88773 3.03980 3.23494 3.44872 3.53342 3.65374 3.67052 3.80673 3.96361 4.11999 4.16868 4.21070 4.22709 4.26766 4.35613 4.38515 4.50060 4.52121 4.57908 4.62543 4.74911 4.76957 4.80555 4.83762 4.87937 4.93774 5.01678 5.06603 5.15026 5.21390 5.37035 5.43915 5.51106 5.61226 5.78579 5.88148 5.90217 6.11262 6.35073 6.57139 6.63646 7.16535 7.22064 7.61226 8.16738 8.72804 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009672 B = 0.002714 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.240582 B =10315.594844 C =12613.358033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.186 4.186 3 C 0.111 3.889 4 H 0.093 0.907 5 O -0.389 6.389 6 C 0.043 3.957 7 C -0.140 4.140 8 C -0.131 4.131 9 H 0.135 0.865 10 C 0.518 3.482 11 O -0.584 6.584 12 N -0.701 5.701 13 C 0.135 3.865 14 C 0.083 3.917 15 H 0.100 0.900 16 C -0.148 4.148 17 C -0.148 4.148 18 N -0.672 5.672 19 C 0.066 3.934 20 C 0.440 3.560 21 O -0.620 6.620 22 N -0.575 5.575 23 C -0.328 4.328 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.921 5.921 27 Si 0.988 3.012 28 H -0.274 1.274 29 H -0.273 1.273 30 H -0.272 1.272 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.414 0.586 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.345 0.655 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.396 0.604 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.246 -3.106 -4.045 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.204 4.204 3 C 0.053 3.947 4 H 0.111 0.889 5 O -0.308 6.308 6 C -0.033 4.033 7 C -0.178 4.178 8 C -0.152 4.152 9 H 0.153 0.847 10 C 0.305 3.695 11 O -0.466 6.466 12 N -0.351 5.351 13 C 0.010 3.990 14 C -0.027 4.027 15 H 0.118 0.882 16 C -0.187 4.187 17 C -0.206 4.206 18 N -0.303 5.303 19 C -0.066 4.066 20 C 0.228 3.772 21 O -0.506 6.506 22 N -0.213 5.213 23 C -0.458 4.458 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.562 5.562 27 Si 0.812 3.188 28 H -0.198 1.198 29 H -0.199 1.199 30 H -0.197 1.197 31 H 0.142 0.858 32 H 0.110 0.890 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.251 0.749 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.164 0.836 47 H 0.128 0.872 48 H 0.084 0.916 49 H 0.230 0.770 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.690 -2.991 -5.418 19.688 hybrid contribution 1.413 0.484 1.170 1.897 sum -17.277 -2.507 -4.249 17.967 Atomic orbital electron populations 1.24091 0.95699 1.02910 0.97513 1.23322 0.96738 0.97959 1.02363 1.21829 0.92036 0.97000 0.83830 0.88943 1.88938 1.22748 1.85445 1.33716 1.23798 0.85443 0.99524 0.94554 1.23161 0.94291 1.02840 0.97540 1.22688 0.97131 0.97670 0.97698 0.84683 1.20590 0.80912 0.87177 0.80793 1.90641 1.34015 1.52391 1.69506 1.45777 1.37739 1.26095 1.25474 1.21399 0.98469 0.86931 0.92153 1.21929 0.87053 0.98984 0.94772 0.88213 1.22165 0.99116 0.97133 1.00317 1.21748 0.95251 1.02559 1.01026 1.60075 1.01085 1.32952 1.36163 1.21574 0.89550 1.02263 0.93236 1.20912 0.87781 0.82138 0.86395 1.90511 1.83767 1.56386 1.19936 1.41947 1.08418 1.57634 1.13314 1.19648 0.86454 1.41739 0.97915 0.90429 1.25964 1.03410 0.96423 0.95451 1.69671 1.35846 1.44486 1.06213 0.84934 0.77427 0.78231 0.78159 1.19847 1.19891 1.19683 0.85850 0.88978 0.85392 0.89706 0.87966 0.91808 0.87309 0.74947 0.90274 0.93234 0.91333 0.91735 0.91779 0.92089 0.92410 0.83616 0.87225 0.91608 0.77029 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 14.32 67.79 0.97 -1.73 16 2 C -0.19 -3.38 8.87 25.65 0.23 -3.15 16 3 C 0.11 2.60 3.45 30.22 0.10 2.70 16 4 H 0.09 2.65 6.11 -2.38 -0.01 2.63 16 5 O -0.39 -10.07 11.18 -148.98 -1.67 -11.73 16 6 C 0.04 0.83 7.66 72.75 0.56 1.39 16 7 C -0.14 -2.89 6.69 31.98 0.21 -2.67 16 8 C -0.13 -2.72 3.05 -10.55 -0.03 -2.75 16 9 H 0.14 2.10 7.69 -2.39 -0.02 2.09 16 10 C 0.52 13.43 7.03 87.66 0.62 14.05 16 11 O -0.58 -19.26 15.26 -3.03 -0.05 -19.31 16 12 N -0.70 -15.88 5.35 -463.05 -2.48 -18.36 16 13 C 0.13 2.88 5.02 86.38 0.43 3.31 16 14 C 0.08 1.56 2.21 44.92 0.10 1.66 16 15 H 0.10 1.64 7.69 -2.39 -0.02 1.62 16 16 C -0.15 -2.45 5.38 30.60 0.16 -2.29 16 17 C -0.15 -2.03 9.54 71.98 0.69 -1.34 16 18 N -0.67 -17.49 5.23 -495.55 -2.59 -20.08 16 19 C 0.07 1.91 5.99 85.56 0.51 2.42 16 20 C 0.44 19.12 7.83 87.66 0.69 19.80 16 21 O -0.62 -32.02 15.90 -3.06 -0.05 -32.07 16 22 N -0.58 -27.69 5.29 -306.99 -1.62 -29.31 16 23 C -0.33 -17.87 9.68 84.04 0.81 -17.05 16 24 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 25 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 26 N -0.92 -48.12 13.05 21.66 0.28 -47.84 16 27 Si 0.99 41.79 29.55 68.60 2.03 43.81 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 30 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 31 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.09 1.64 7.85 -2.91 -0.02 1.62 16 33 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.83 16 36 H 0.06 1.61 7.86 -2.39 -0.02 1.59 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.41 8.84 8.14 -92.70 -0.75 8.09 16 39 H 0.08 1.58 6.96 -2.39 -0.02 1.56 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.17 7.52 -2.39 -0.02 1.15 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.80 6.98 -2.39 -0.02 0.79 16 46 H 0.34 10.00 8.36 -89.70 -0.75 9.25 16 47 H 0.11 2.70 7.92 -2.39 -0.02 2.68 16 48 H 0.07 1.68 7.56 -2.38 -0.02 1.66 16 49 H 0.40 18.07 7.90 -92.70 -0.73 17.34 16 50 H 0.28 13.54 8.31 -92.70 -0.77 12.77 16 Total: -1.00 -70.19 411.49 -0.89 -71.08 By element: Atomic # 1 Polarization: 50.92 SS G_CDS: -1.27 Total: 49.65 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.52 Total: 14.16 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -6.41 Total: -115.59 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -1.76 Total: -63.11 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -70.19 -0.89 -71.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481851050.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.201 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds