Wall clock time and date at job start Tue Mar 31 2020 23:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47436 * 2 1 4 4 H 1.09000 * 110.42963 * 59.92798 * 3 2 1 5 5 C 1.54805 * 110.48628 * 297.38876 * 3 2 1 6 6 C 1.54992 * 102.09056 * 220.30688 * 5 3 2 7 7 O 1.44378 * 103.49091 * 37.02541 * 6 5 3 8 8 C 1.43746 * 106.97305 * 319.94016 * 7 6 5 9 9 H 1.09002 * 110.00056 * 267.01346 * 8 7 6 10 10 C 1.50706 * 109.87970 * 145.94007 * 8 7 6 11 11 O 1.21278 * 119.99748 * 345.52403 * 10 8 7 12 12 N 1.34775 * 119.99973 * 165.52432 * 10 8 7 13 13 C 1.46500 * 120.00023 * 183.90547 * 12 10 8 14 14 C 1.52995 * 109.47079 * 175.05667 * 13 12 10 15 15 N 1.46904 * 115.54757 * 268.47493 * 14 13 12 16 16 C 1.46898 * 110.99956 * 303.29566 * 15 14 13 17 17 C 1.50700 * 109.46863 * 185.24596 * 16 15 14 18 18 O 1.21282 * 120.00395 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99537 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99555 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00298 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99755 * 179.97438 * 20 19 17 23 23 N 1.31406 * 119.99795 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99738 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47323 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46947 * 120.00078 * 24 22 20 27 27 H 1.48499 * 109.46889 * 240.00266 * 24 22 20 28 28 C 1.53001 * 117.49978 * 122.77170 * 14 13 12 29 29 C 1.53001 * 117.50055 * 54.14595 * 14 13 12 30 30 H 1.08995 * 109.47059 * 300.00129 * 1 2 3 31 31 H 1.08995 * 109.46997 * 60.00240 * 1 2 3 32 32 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47448 * 239.99831 * 2 1 3 34 34 H 1.09005 * 109.47172 * 120.00541 * 2 1 3 35 35 H 1.09000 * 110.90864 * 102.10974 * 5 3 2 36 36 H 1.08999 * 110.90655 * 338.50393 * 5 3 2 37 37 H 1.09002 * 110.61941 * 155.51989 * 6 5 3 38 38 H 1.09001 * 110.61995 * 278.52341 * 6 5 3 39 39 H 0.97005 * 119.99931 * 3.90623 * 12 10 8 40 40 H 1.09008 * 109.46634 * 295.05328 * 13 12 10 41 41 H 1.08993 * 109.47250 * 55.04973 * 13 12 10 42 42 H 1.00905 * 111.00055 * 179.34210 * 15 14 13 43 43 H 1.09000 * 109.47406 * 305.24370 * 16 15 14 44 44 H 1.09004 * 109.47088 * 65.24822 * 16 15 14 45 45 H 0.96995 * 120.00880 * 0.02562 * 19 17 16 46 46 H 0.96999 * 119.99793 * 179.97438 * 23 22 20 47 47 H 1.08999 * 117.49707 * 359.97438 * 28 14 13 48 48 H 1.08995 * 117.50221 * 145.01914 * 28 14 13 49 49 H 1.09003 * 117.49432 * 214.97402 * 29 14 13 50 50 H 1.08995 * 117.49572 * 359.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6844 1.9719 0.8840 5 6 1.5918 2.1757 -1.2876 6 6 2.8548 2.9979 -1.6495 7 8 3.9428 2.1166 -1.2973 8 6 3.5793 1.4733 -0.0642 9 1 3.9745 2.0369 0.7809 10 6 4.1215 0.0673 -0.0406 11 8 4.5239 -0.4447 -1.0637 12 7 4.1592 -0.6210 1.1176 13 6 4.7642 -1.9546 1.1577 14 6 4.7888 -2.4602 2.6015 15 7 6.0087 -2.1524 3.3599 16 6 7.1993 -2.6761 2.6770 17 6 8.4126 -2.4559 3.5432 18 8 8.2970 -1.9163 4.6233 19 7 9.6264 -2.8586 3.1176 20 6 10.7302 -2.6588 3.9059 21 1 10.6272 -2.1783 4.8676 22 6 11.9815 -3.0745 3.4674 23 7 12.1069 -3.6586 2.2970 24 14 13.4856 -2.8015 4.5410 25 1 13.0792 -2.1270 5.8001 26 1 14.1104 -4.1105 4.8595 27 1 14.4627 -1.9496 3.8167 28 6 4.0890 -3.7883 2.8970 29 6 3.4648 -2.4732 3.3681 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.7449 2.8318 -1.0868 36 1 1.3518 1.4636 -2.0772 37 1 2.8735 3.2235 -2.7157 38 1 2.8976 3.9146 -1.0613 39 1 3.7856 -0.2333 1.9245 40 1 4.1781 -2.6381 0.5433 41 1 5.7828 -1.9032 0.7733 42 1 5.9474 -2.5067 4.3027 43 1 7.0729 -3.7430 2.4932 44 1 7.3315 -2.1569 1.7277 45 1 9.7191 -3.2898 2.2537 46 1 12.9804 -3.9484 1.9907 47 1 3.6107 -4.3016 2.0628 48 1 4.5337 -4.4340 3.6541 49 1 3.4990 -2.2538 4.4353 50 1 2.5763 -2.1212 2.8440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483743393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:32 Heat of formation + Delta-G solvation = -92.175739 kcal Electronic energy + Delta-G solvation = -30071.103379 eV Core-core repulsion = 25906.029648 eV Total energy + Delta-G solvation = -4165.073731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.91378 -39.32789 -38.31072 -37.68080 -35.23091 -34.16450 -33.93318 -32.66003 -31.19707 -30.71539 -30.00897 -27.06111 -26.52781 -24.12026 -24.06870 -23.17399 -22.61062 -21.43314 -20.10757 -19.59122 -19.26836 -17.91258 -17.43784 -17.04222 -16.53708 -16.41223 -15.79389 -15.43249 -15.12773 -14.89213 -14.80165 -14.70160 -14.48319 -14.04103 -14.00644 -13.86560 -13.50167 -13.22359 -13.03034 -12.72329 -12.53128 -12.42224 -12.19338 -12.01461 -11.73330 -11.69294 -11.62805 -11.50094 -11.46580 -11.12214 -11.08636 -10.98556 -10.86351 -10.40436 -10.34388 -10.27391 -10.21750 -9.57117 -9.52899 -9.08767 -8.43623 -8.09363 -7.96994 -6.42025 -3.83119 2.46024 2.80830 3.16378 3.27072 3.34001 3.53889 3.77123 3.87485 3.98141 4.06509 4.23255 4.25263 4.41409 4.45324 4.60767 4.67280 4.76080 4.81770 4.83830 4.97814 5.01233 5.04736 5.08664 5.22589 5.25262 5.34569 5.41383 5.43256 5.44645 5.50462 5.53217 5.62701 5.65914 5.69859 5.74038 5.78796 5.84561 5.90316 5.94634 6.01211 6.24671 6.31346 6.48413 7.11195 7.40364 7.54701 7.55253 8.05138 8.15021 8.59407 9.16713 9.52893 10.03332 10.75623 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.002318 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.956281 B =12075.371050 C =13224.399840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.111 4.111 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.346 6.346 8 C 0.061 3.939 9 H 0.094 0.906 10 C 0.520 3.480 11 O -0.523 6.523 12 N -0.718 5.718 13 C 0.164 3.836 14 C 0.040 3.960 15 N -0.627 5.627 16 C 0.048 3.952 17 C 0.440 3.560 18 O -0.587 6.587 19 N -0.561 5.561 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.899 5.899 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 C -0.207 4.207 29 C -0.166 4.166 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.403 0.597 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.356 0.644 43 H 0.049 0.951 44 H 0.089 0.911 45 H 0.393 0.607 46 H 0.272 0.728 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.850 7.186 -5.604 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.130 4.130 4 H 0.112 0.888 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.264 6.264 8 C 0.000 4.000 9 H 0.111 0.889 10 C 0.305 3.695 11 O -0.398 6.398 12 N -0.372 5.372 13 C 0.041 3.959 14 C -0.053 4.053 15 N -0.258 5.258 16 C -0.084 4.084 17 C 0.225 3.775 18 O -0.471 6.471 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.541 5.541 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.248 4.248 29 C -0.204 4.204 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.238 0.762 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.177 0.823 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.119 7.719 -6.102 26.977 hybrid contribution 0.489 -0.907 0.684 1.237 sum -24.629 6.812 -5.418 26.122 Atomic orbital electron populations 1.21754 0.95107 1.01901 1.01865 1.21828 0.96639 0.94843 1.03352 1.22561 0.92650 0.98018 0.99751 0.88832 1.23235 0.98576 0.99429 0.97331 1.23636 0.85175 0.92932 1.01581 1.89024 1.40470 1.58045 1.38838 1.22742 0.94998 0.92265 0.90005 0.88880 1.20239 0.78422 0.87216 0.83647 1.90730 1.46535 1.69778 1.32728 1.45920 1.61507 1.18529 1.11292 1.20770 0.99695 0.83016 0.92465 1.21847 0.90306 0.99014 0.94180 1.59937 0.98568 1.62151 1.05165 1.21718 0.90070 0.98272 0.98353 1.19742 0.84304 0.85121 0.88325 1.90517 1.85599 1.47519 1.23508 1.41863 1.05581 1.52533 1.19714 1.19749 0.84519 1.36720 1.01957 0.87845 1.25285 0.99249 0.96775 0.96646 1.69621 1.25384 1.40149 1.18900 0.85794 0.80710 0.77987 0.79813 1.19213 1.20747 1.20692 1.23687 1.05401 0.91505 1.04162 1.23114 0.95331 1.00951 1.01008 0.92603 0.92584 0.92535 0.91056 0.90845 0.89846 0.90008 0.88547 0.91814 0.76215 0.90989 0.89966 0.82313 0.93317 0.89335 0.77370 0.91849 0.88480 0.88388 0.88088 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.72 37.16 0.36 -0.48 16 2 C -0.13 -0.95 4.15 -26.73 -0.11 -1.06 16 3 C -0.11 -0.78 3.12 -89.10 -0.28 -1.06 16 4 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -0.96 5.72 -24.73 -0.14 -1.10 16 6 C 0.04 0.34 7.72 38.21 0.29 0.64 16 7 O -0.35 -4.37 10.78 -54.37 -0.59 -4.95 16 8 C 0.06 0.64 3.84 -27.31 -0.11 0.53 16 9 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.52 6.73 5.06 -10.98 -0.06 6.68 16 11 O -0.52 -9.11 16.55 -13.58 -0.22 -9.34 16 12 N -0.72 -7.75 4.18 -60.30 -0.25 -8.00 16 13 C 0.16 1.97 5.73 -4.04 -0.02 1.95 16 14 C 0.04 0.46 2.10 -131.60 -0.28 0.18 16 15 N -0.63 -9.67 6.42 -101.22 -0.65 -10.32 16 16 C 0.05 0.85 5.80 -4.98 -0.03 0.82 16 17 C 0.44 10.39 7.81 -10.98 -0.09 10.31 16 18 O -0.59 -15.80 15.66 5.56 0.09 -15.71 16 19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 24 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C -0.21 -2.03 10.01 -26.73 -0.27 -2.30 16 29 C -0.17 -1.47 9.42 -26.73 -0.25 -1.72 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.30 7.23 -51.93 -0.38 -0.07 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.71 7.46 -51.93 -0.39 0.32 16 34 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.59 7.70 -51.93 -0.40 0.19 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.40 3.49 7.74 -40.82 -0.32 3.18 16 40 H 0.07 0.81 7.87 -51.92 -0.41 0.40 16 41 H 0.08 1.20 6.10 -51.93 -0.32 0.88 16 42 H 0.36 5.72 8.10 -39.29 -0.32 5.40 16 43 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 44 H 0.09 1.54 6.50 -51.93 -0.34 1.20 16 45 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 48 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -34.60 404.14 -9.19 -43.79 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -8.09 Total: 15.42 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.21 Total: 5.32 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.24 Total: -56.81 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.72 Total: -30.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.60 -9.19 -43.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483743393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.382 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds