Wall clock time and date at job start Tue Mar 31 2020 23:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47086 * 2 1 4 4 H 1.08995 * 110.67679 * 52.03443 * 3 2 1 5 5 O 1.44389 * 110.61675 * 289.07236 * 3 2 1 6 6 C 1.43745 * 106.97084 * 201.43732 * 5 3 2 7 7 C 1.54100 * 107.29697 * 26.51737 * 6 5 3 8 8 C 1.54813 * 104.18678 * 357.96434 * 7 6 5 9 9 H 1.09005 * 110.90543 * 97.35385 * 8 7 6 10 10 C 1.50692 * 110.91042 * 220.92165 * 8 7 6 11 11 O 1.21280 * 119.99981 * 118.54546 * 10 8 7 12 12 N 1.34777 * 120.00344 * 298.55248 * 10 8 7 13 13 C 1.46500 * 120.00462 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47037 * 174.86219 * 13 12 10 15 15 N 1.46894 * 115.55066 * 325.02834 * 14 13 12 16 16 C 1.46894 * 110.99858 * 279.55949 * 15 14 13 17 17 C 1.50706 * 109.46904 * 174.70675 * 16 15 14 18 18 O 1.21295 * 119.99967 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99970 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00006 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99651 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00154 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99585 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00051 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47408 * 90.00061 * 24 22 20 26 26 H 1.48503 * 109.47045 * 210.00008 * 24 22 20 27 27 H 1.48499 * 109.47353 * 329.99386 * 24 22 20 28 28 C 1.53002 * 117.51502 * 110.73539 * 14 13 12 29 29 C 1.52999 * 60.00256 * 107.47645 * 28 14 13 30 30 H 1.08998 * 109.47705 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47230 * 300.00163 * 1 2 3 32 32 H 1.09000 * 109.47500 * 59.99584 * 1 2 3 33 33 H 1.09002 * 109.46625 * 240.00559 * 2 1 3 34 34 H 1.08997 * 109.46993 * 120.00411 * 2 1 3 35 35 H 1.08998 * 109.88278 * 267.08961 * 6 5 3 36 36 H 1.09001 * 109.87439 * 145.93830 * 6 5 3 37 37 H 1.08996 * 110.48818 * 239.29281 * 7 6 5 38 38 H 1.08998 * 110.60230 * 116.69437 * 7 6 5 39 39 H 0.97008 * 119.99637 * 359.97438 * 12 10 8 40 40 H 1.08996 * 109.47041 * 54.85705 * 13 12 10 41 41 H 1.09003 * 109.46582 * 294.85799 * 13 12 10 42 42 H 1.00900 * 110.99894 * 155.60666 * 15 14 13 43 43 H 1.08996 * 109.47218 * 54.70906 * 16 15 14 44 44 H 1.09003 * 109.47697 * 294.70204 * 16 15 14 45 45 H 0.96995 * 120.00181 * 0.02562 * 19 17 16 46 46 H 0.97005 * 119.99811 * 180.02562 * 23 22 20 47 47 H 1.09001 * 117.49446 * 214.96640 * 28 14 13 48 48 H 1.08999 * 117.50347 * 359.97438 * 28 14 13 49 49 H 1.08995 * 117.49813 * 252.50948 * 29 28 14 50 50 H 1.08997 * 117.49951 * 107.48721 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5768 2.0144 0.8039 5 8 1.7931 2.0690 -1.2772 6 6 2.7072 3.1730 -1.3867 7 6 3.9333 2.8409 -0.5143 8 6 3.5844 1.4754 0.1264 9 1 4.0384 0.6565 -0.4318 10 6 4.0066 1.4362 1.5724 11 8 3.1764 1.2796 2.4425 12 7 5.3068 1.5753 1.8989 13 6 5.7174 1.5366 3.3047 14 6 7.2441 1.5883 3.3917 15 7 7.9639 0.8945 2.3154 16 6 8.0201 -0.5516 2.5669 17 6 8.6485 -1.2430 1.3844 18 8 9.0132 -0.5947 0.4262 19 7 8.8044 -2.5817 1.3910 20 6 9.3756 -3.2107 0.3151 21 1 9.7003 -2.6335 -0.5380 22 6 9.5359 -4.5909 0.3217 23 7 9.1403 -5.2933 1.3596 24 14 10.3148 -5.4478 -1.1440 25 1 11.7847 -5.5254 -0.9483 26 1 9.7589 -6.8192 -1.2684 27 1 10.0198 -4.6802 -2.3805 28 6 7.8770 2.8603 3.9594 29 6 7.8730 1.5731 4.7864 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.2318 4.0851 -1.0260 36 1 3.0142 3.2983 -2.4250 37 1 4.0702 3.5997 0.2560 38 1 4.8296 2.7561 -1.1287 39 1 5.9709 1.7003 1.2029 40 1 5.3583 0.6151 3.7628 41 1 5.2943 2.3927 3.8303 42 1 8.8898 1.2769 2.1947 43 1 7.0105 -0.9339 2.7168 44 1 8.6171 -0.7425 3.4587 45 1 8.5118 -3.1003 2.1567 46 1 9.2525 -6.2568 1.3644 47 1 8.8276 3.1824 3.5342 48 1 7.2059 3.6608 4.2706 49 1 7.1991 1.5267 5.6419 50 1 8.8209 1.0484 4.9054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483752564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:57 Heat of formation + Delta-G solvation = -101.367723 kcal Electronic energy + Delta-G solvation = -30201.615439 eV Core-core repulsion = 26036.143113 eV Total energy + Delta-G solvation = -4165.472325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.57182 -39.30358 -38.37374 -37.74739 -34.30109 -34.05016 -33.58052 -32.64217 -32.43395 -31.23205 -28.69857 -27.23858 -26.58438 -24.16360 -23.91155 -22.65283 -22.39565 -21.16681 -20.20510 -19.67313 -19.25809 -17.92977 -17.61653 -16.65312 -16.39370 -15.97921 -15.80927 -15.47937 -15.34454 -14.85353 -14.57615 -14.47081 -14.22435 -13.96668 -13.77706 -13.69947 -13.42969 -13.29982 -13.14411 -13.02306 -12.50191 -12.26753 -12.20434 -11.77935 -11.76103 -11.63314 -11.57151 -11.50754 -11.13109 -11.01100 -10.93283 -10.88967 -10.74101 -10.42924 -10.28938 -10.20824 -9.91863 -9.69098 -9.55488 -8.98637 -8.56580 -8.21891 -8.01455 -6.46039 -3.87270 2.60932 3.04514 3.14562 3.23931 3.29329 3.53860 3.70654 3.84279 3.94030 4.19805 4.30932 4.45981 4.49493 4.59627 4.66135 4.73656 4.86123 5.02601 5.06852 5.10129 5.11929 5.20153 5.27815 5.39248 5.43401 5.47231 5.52885 5.55288 5.56778 5.62926 5.68215 5.70099 5.77774 5.80797 5.86005 5.90101 5.90252 5.97475 6.09358 6.18497 6.26130 6.44889 6.75674 7.02448 7.43056 7.50804 7.60299 8.00781 8.23881 8.55496 9.12914 9.48844 9.99487 10.71486 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008315 B = 0.003150 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.765619 B = 8887.772386 C =10965.689403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.100 3.900 4 H 0.082 0.918 5 O -0.372 6.372 6 C 0.050 3.950 7 C -0.147 4.147 8 C -0.144 4.144 9 H 0.116 0.884 10 C 0.525 3.475 11 O -0.548 6.548 12 N -0.707 5.707 13 C 0.171 3.829 14 C 0.035 3.965 15 N -0.629 5.629 16 C 0.053 3.947 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.561 5.561 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 C -0.169 4.169 29 C -0.204 4.204 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.416 0.584 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.354 0.646 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 15.699 3.405 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.042 3.958 4 H 0.100 0.900 5 O -0.291 6.291 6 C -0.027 4.027 7 C -0.185 4.185 8 C -0.165 4.165 9 H 0.134 0.866 10 C 0.310 3.690 11 O -0.426 6.426 12 N -0.360 5.360 13 C 0.046 3.954 14 C -0.058 4.058 15 N -0.260 5.260 16 C -0.079 4.079 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.198 5.198 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.207 4.207 29 C -0.244 4.244 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.254 0.746 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.175 0.825 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.132 15.687 2.818 19.441 hybrid contribution 1.612 -0.804 0.452 1.857 sum -9.520 14.883 3.270 17.967 Atomic orbital electron populations 1.21697 0.95208 1.01579 1.01969 1.21553 0.96796 0.93960 1.03118 1.22990 0.91304 0.95247 0.86210 0.90041 1.88895 1.58357 1.44981 1.36908 1.23102 0.88920 0.90148 1.00575 1.22932 1.00023 0.95643 0.99876 1.22946 0.98798 1.00542 0.94248 0.86582 1.20171 0.82438 0.76049 0.90303 1.90688 1.51599 1.49792 1.50551 1.45828 1.08103 1.72827 1.09223 1.20678 0.89687 1.02021 0.82999 1.21906 0.93469 1.00069 0.90333 1.59703 1.23904 1.02492 1.39886 1.21660 1.01458 0.87971 0.96797 1.19751 0.85467 0.83136 0.89116 1.90521 1.54971 1.64952 1.36404 1.41859 1.53784 1.05121 1.19017 1.19690 1.35833 0.90114 0.97393 0.87906 1.25268 0.97720 0.96483 0.98383 1.69613 1.47129 1.07712 1.29663 0.85860 0.78979 0.78371 0.81109 1.20411 1.20875 1.19369 1.23319 1.02852 0.91450 1.03049 1.23541 1.03489 1.01580 0.95758 0.92691 0.92794 0.92313 0.91087 0.90076 0.92338 0.89529 0.90294 0.89181 0.74638 0.91028 0.91239 0.82538 0.89625 0.93510 0.77480 0.91807 0.88320 0.88104 0.88279 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.86 37.16 0.37 -1.18 16 2 C -0.12 -1.38 5.69 -26.73 -0.15 -1.53 16 3 C 0.10 1.20 2.34 -25.68 -0.06 1.14 16 4 H 0.08 1.05 7.53 -51.93 -0.39 0.66 16 5 O -0.37 -4.51 11.08 -35.23 -0.39 -4.90 16 6 C 0.05 0.46 7.70 37.73 0.29 0.75 16 7 C -0.15 -1.35 6.55 -25.20 -0.16 -1.52 16 8 C -0.14 -1.66 2.95 -89.77 -0.26 -1.93 16 9 H 0.12 1.38 8.06 -51.93 -0.42 0.96 16 10 C 0.52 6.96 7.05 -10.99 -0.08 6.89 16 11 O -0.55 -8.76 15.70 5.56 0.09 -8.67 16 12 N -0.71 -8.66 5.35 -60.30 -0.32 -8.98 16 13 C 0.17 1.98 5.73 -4.04 -0.02 1.96 16 14 C 0.04 0.39 2.12 -131.60 -0.28 0.11 16 15 N -0.63 -8.78 5.16 -101.22 -0.52 -9.30 16 16 C 0.05 0.88 5.95 -4.98 -0.03 0.85 16 17 C 0.44 9.85 7.83 -10.98 -0.09 9.77 16 18 O -0.58 -14.94 15.89 5.54 0.09 -14.85 16 19 N -0.56 -13.83 5.29 -10.96 -0.06 -13.88 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 24 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 C -0.17 -1.50 9.87 -26.73 -0.26 -1.77 16 29 C -0.20 -1.95 9.67 -26.73 -0.26 -2.21 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.68 7.85 -51.93 -0.41 0.28 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.42 5.14 7.75 -40.82 -0.32 4.82 16 40 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 41 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 42 H 0.35 5.07 8.39 -39.29 -0.33 4.74 16 43 H 0.09 1.39 8.00 -51.93 -0.42 0.97 16 44 H 0.05 0.71 7.64 -51.93 -0.40 0.31 16 45 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 48 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16 LS Contribution 412.61 15.07 6.22 6.22 Total: -1.00 -31.30 412.61 -8.83 -40.12 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -8.38 Total: 18.50 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -1.24 Total: 3.49 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.18 Total: -55.64 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.22 Total: -28.42 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.30 -8.83 -40.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483752564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.245 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds