Wall clock time and date at job start Tue Mar 31 2020 23:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47084 * 2 1 4 4 C 1.50693 * 109.47332 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99833 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00331 * 179.97438 * 4 3 2 7 7 C 1.47431 * 125.64663 * 359.94989 * 6 4 3 8 8 C 1.54903 * 104.83085 * 155.91395 * 7 6 4 9 9 C 1.55160 * 101.58319 * 37.01245 * 8 7 6 10 10 C 1.47019 * 125.65041 * 179.97438 * 6 4 3 11 11 H 1.08997 * 110.01720 * 300.50200 * 10 6 4 12 12 C 1.50701 * 109.88271 * 61.60040 * 10 6 4 13 13 O 1.21284 * 119.99775 * 359.26239 * 12 10 6 14 14 N 1.34773 * 120.00350 * 179.26212 * 12 10 6 15 15 C 1.46500 * 120.00136 * 179.97438 * 14 12 10 16 16 C 1.53000 * 109.47021 * 179.97438 * 15 14 12 17 17 O 1.42904 * 113.28169 * 51.93248 * 16 15 14 18 18 C 1.53497 * 114.20787 * 184.99976 * 16 15 14 19 19 N 1.47062 * 87.98453 * 87.71861 * 18 16 15 20 20 C 1.36943 * 136.05579 * 207.08745 * 19 18 16 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99622 * 180.27778 * 20 19 18 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99850 * 24 22 20 26 26 H 1.48499 * 109.47039 * 210.00011 * 24 22 20 27 27 H 1.48501 * 109.47275 * 329.99811 * 24 22 20 28 28 C 1.47067 * 87.88602 * 27.34481 * 19 18 16 29 29 H 1.09004 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47059 * 299.99663 * 1 2 3 31 31 H 1.09002 * 109.47227 * 60.00334 * 1 2 3 32 32 H 1.09000 * 109.47551 * 240.00416 * 2 1 3 33 33 H 1.09002 * 109.47227 * 119.99666 * 2 1 3 34 34 H 1.09000 * 109.46586 * 59.99826 * 3 2 1 35 35 H 1.08998 * 109.47191 * 300.00248 * 3 2 1 36 36 H 1.08994 * 110.36558 * 37.07564 * 7 6 4 37 37 H 1.08996 * 110.45862 * 274.80433 * 7 6 4 38 38 H 1.09002 * 111.01100 * 278.93507 * 8 7 6 39 39 H 1.09002 * 111.03581 * 155.09587 * 8 7 6 40 40 H 1.09001 * 110.71666 * 206.13198 * 9 8 7 41 41 H 1.08998 * 110.72149 * 82.85676 * 9 8 7 42 42 H 0.97005 * 119.99823 * 359.97438 * 14 12 10 43 43 H 1.09003 * 109.47242 * 60.00043 * 15 14 12 44 44 H 1.08991 * 109.47149 * 299.99740 * 15 14 12 45 45 H 0.96695 * 114.00117 * 313.07249 * 17 16 15 46 46 H 1.09000 * 113.46436 * 332.93489 * 18 16 15 47 47 H 1.08997 * 113.51966 * 202.51274 * 18 16 15 48 48 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 49 49 H 1.08994 * 113.46653 * 87.43736 * 28 19 18 50 50 H 1.08996 * 113.46465 * 217.87717 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0002 7 6 3.6129 3.9529 -0.0019 8 6 4.6941 4.8785 0.6095 9 6 5.9948 4.2659 0.0261 10 6 5.6839 2.7545 0.0013 11 1 6.1056 2.2747 0.8844 12 6 6.2613 2.1332 -1.2444 13 8 5.5289 1.6048 -2.0539 14 7 7.5914 2.1647 -1.4588 15 6 8.1528 1.5601 -2.6695 16 6 9.6730 1.7328 -2.6680 17 8 10.2914 1.2827 -1.4609 18 6 10.3632 1.2441 -3.9490 19 7 10.1369 2.5808 -4.5189 20 6 9.9794 3.1035 -5.7748 21 1 10.0135 2.4549 -6.6378 22 6 9.7821 4.4676 -5.9391 23 7 9.7411 5.2580 -4.8875 24 14 9.5750 5.1816 -7.6528 25 1 8.1358 5.1813 -8.0185 26 1 10.0910 6.5739 -7.6746 27 1 10.3337 4.3573 -8.6276 28 6 10.1606 3.1101 -3.1470 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 2.7130 3.9629 0.6131 37 1 3.3791 4.2637 -1.0201 38 1 4.6887 4.8198 1.6980 39 1 4.5628 5.9076 0.2752 40 1 6.8445 4.4741 0.6763 41 1 6.1784 4.6388 -0.9816 42 1 8.1772 2.5876 -0.8115 43 1 7.7327 2.0495 -3.5483 44 1 7.9074 0.4985 -2.6927 45 1 9.8542 1.5922 -0.6559 46 1 9.8152 0.4545 -4.4631 47 1 11.4173 1.0040 -3.8106 48 1 9.6029 6.2112 -5.0023 49 1 11.1613 3.3623 -2.7963 50 1 9.4400 3.9102 -2.9780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484311634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:06 Heat of formation + Delta-G solvation = -60.741399 kcal Electronic energy + Delta-G solvation = -30808.581647 eV Core-core repulsion = 26644.871011 eV Total energy + Delta-G solvation = -4163.710636 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.74669 -39.40414 -38.43536 -37.24955 -35.08842 -34.50851 -33.94506 -32.07924 -31.86114 -30.19633 -28.20252 -27.79761 -26.09870 -24.78960 -24.08347 -22.47477 -21.97530 -21.73961 -20.40642 -19.42714 -18.86332 -17.80225 -17.26633 -16.87764 -16.58354 -15.87540 -15.72022 -15.45692 -15.07681 -14.86482 -14.49489 -14.15378 -14.08962 -13.82761 -13.67899 -13.43869 -13.20236 -13.11227 -12.93537 -12.59421 -12.50509 -12.19578 -12.10481 -11.87434 -11.74473 -11.66403 -11.63288 -11.30515 -11.16098 -11.07304 -11.01496 -10.91382 -10.90350 -10.48257 -10.09576 -9.82757 -9.76034 -9.60072 -9.03768 -8.88350 -8.76308 -8.68285 -6.98241 -5.84342 -3.17532 2.54334 2.80865 2.85899 3.36503 3.40920 3.41538 3.42788 4.15605 4.22083 4.32892 4.56521 4.62665 4.65266 4.69836 4.80519 4.85252 4.93666 5.10281 5.12160 5.21053 5.23620 5.27299 5.31463 5.33244 5.40345 5.48905 5.52396 5.55776 5.58454 5.59313 5.81444 5.88207 5.96945 5.97185 6.04531 6.16424 6.30425 6.44924 6.51338 6.58017 6.67339 7.03864 7.09421 7.38841 7.42357 7.65811 7.87839 8.03623 8.17019 8.46059 8.96093 9.62427 10.53118 11.33046 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.002854 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.044816 B = 9809.710417 C =10207.751364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.132 4.132 4 C 0.534 3.466 5 O -0.525 6.525 6 N -0.606 5.606 7 C 0.099 3.901 8 C -0.130 4.130 9 C -0.127 4.127 10 C 0.120 3.880 11 H 0.099 0.901 12 C 0.507 3.493 13 O -0.520 6.520 14 N -0.723 5.723 15 C 0.132 3.868 16 C 0.050 3.950 17 O -0.551 6.551 18 C 0.138 3.862 19 N -0.602 5.602 20 C -0.216 4.216 21 H 0.084 0.916 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.915 3.085 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.139 3.861 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.394 0.606 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.362 0.638 46 H 0.048 0.952 47 H 0.047 0.953 48 H 0.254 0.746 49 H 0.034 0.966 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.577 -0.973 16.747 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.172 4.172 4 C 0.323 3.677 5 O -0.400 6.400 6 N -0.341 5.341 7 C -0.024 4.024 8 C -0.168 4.168 9 C -0.165 4.165 10 C 0.013 3.987 11 H 0.117 0.883 12 C 0.291 3.709 13 O -0.395 6.395 14 N -0.376 5.376 15 C 0.008 3.992 16 C 0.008 3.992 17 O -0.355 6.355 18 C 0.011 3.989 19 N -0.330 5.330 20 C -0.343 4.343 21 H 0.102 0.898 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.745 3.255 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.013 3.987 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.227 0.773 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.208 0.792 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.051 0.949 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.496 -2.070 15.446 21.284 hybrid contribution 0.083 1.090 -0.299 1.133 sum -14.414 -0.981 15.147 20.932 Atomic orbital electron populations 1.21786 0.95514 1.01927 1.01668 1.21293 0.95145 0.94705 1.03696 1.21669 0.91353 1.00160 1.04028 1.20359 0.89960 0.81992 0.75339 1.90716 1.70286 1.30441 1.48518 1.48248 1.05071 1.06250 1.74530 1.22374 0.96845 0.81738 1.01470 1.22776 0.93732 0.99408 1.00894 1.22706 0.98990 0.91088 1.03729 1.21472 0.82833 0.97495 0.96939 0.88283 1.20674 0.82266 0.79944 0.88020 1.90712 1.59008 1.43439 1.46316 1.45805 1.07166 1.60053 1.24620 1.21474 0.91593 0.98205 0.87900 1.23910 0.90548 0.99799 0.84926 1.86574 1.56693 1.76981 1.15204 1.22335 0.97599 0.90591 0.88417 1.45242 1.83427 1.02354 1.01982 1.18906 1.42750 0.91211 0.81443 0.89806 1.24799 1.02078 0.95740 0.97667 1.69815 1.55409 1.03754 1.27583 0.86075 0.77897 0.78348 0.83186 1.21405 1.21582 1.20558 1.22758 0.98636 0.93059 0.84288 0.92416 0.92807 0.92655 0.91027 0.91332 0.89247 0.88956 0.90184 0.90973 0.90205 0.89185 0.88784 0.89287 0.77264 0.88935 0.91539 0.79176 0.93355 0.93514 0.93636 0.94865 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.11 -1.10 5.22 -26.73 -0.14 -1.24 16 3 C -0.13 -1.26 4.71 -27.88 -0.13 -1.39 16 4 C 0.53 7.38 7.01 -10.99 -0.08 7.30 16 5 O -0.52 -9.52 15.23 -8.99 -0.14 -9.66 16 6 N -0.61 -7.23 2.84 -164.33 -0.47 -7.70 16 7 C 0.10 0.79 6.69 -2.53 -0.02 0.78 16 8 C -0.13 -0.84 7.08 -24.58 -0.17 -1.02 16 9 C -0.13 -1.11 6.37 -24.89 -0.16 -1.27 16 10 C 0.12 1.44 3.26 -68.10 -0.22 1.22 16 11 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 12 C 0.51 8.33 6.68 -10.99 -0.07 8.25 16 13 O -0.52 -10.98 15.02 -8.99 -0.14 -11.11 16 14 N -0.72 -10.98 5.24 -60.30 -0.32 -11.30 16 15 C 0.13 2.46 5.33 -4.04 -0.02 2.44 16 16 C 0.05 0.96 1.73 -89.97 -0.16 0.80 16 17 O -0.55 -9.17 13.55 -35.23 -0.48 -9.65 16 18 C 0.14 2.95 8.10 -8.51 -0.07 2.88 16 19 N -0.60 -15.42 3.56 -184.59 -0.66 -16.08 16 20 C -0.22 -6.03 10.75 -15.06 -0.16 -6.19 16 21 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.92 -26.56 11.50 55.49 0.64 -25.93 16 24 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.14 3.19 6.83 -8.37 -0.06 3.13 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.09 0.61 7.85 -51.93 -0.41 0.20 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.44 7.48 -51.93 -0.39 0.05 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.97 7.84 -51.93 -0.41 0.56 16 42 H 0.39 4.66 7.21 -40.82 -0.29 4.36 16 43 H 0.09 2.08 7.95 -51.93 -0.41 1.67 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.36 4.44 7.50 45.56 0.34 4.78 16 46 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.07 1.84 7.10 -51.93 -0.37 1.48 16 LS Contribution 404.10 15.07 6.09 6.09 Total: -1.00 -37.31 404.10 -9.49 -46.80 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.82 Total: 6.85 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: -1.19 Total: 14.68 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.80 Total: -61.00 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.75 Total: -30.42 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.31 -9.49 -46.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484311634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.940 kcal (2) G-P(sol) polarization free energy of solvation -37.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds