Wall clock time and date at job start Tue Mar 31 2020 23:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47561 * 2 1 4 4 C 1.50699 * 109.47429 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99901 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99870 * 180.02562 * 4 3 2 7 7 C 1.47424 * 125.64836 * 359.95258 * 6 4 3 8 8 C 1.54908 * 104.82940 * 204.16221 * 7 6 4 9 9 C 1.55153 * 101.58630 * 322.99437 * 8 7 6 10 10 C 1.47022 * 125.64436 * 179.97438 * 6 4 3 11 11 H 1.09002 * 109.88254 * 59.48684 * 10 6 4 12 12 C 1.50697 * 109.88348 * 298.47604 * 10 6 4 13 13 O 1.21283 * 120.00255 * 0.31608 * 12 10 6 14 14 N 1.34777 * 120.00038 * 180.31782 * 12 10 6 15 15 C 1.46502 * 120.00121 * 179.97438 * 14 12 10 16 16 C 1.52995 * 109.47286 * 179.97438 * 15 14 12 17 17 O 1.42909 * 112.93839 * 53.41337 * 16 15 14 18 18 C 1.53940 * 113.74581 * 281.68204 * 16 15 14 19 19 N 1.47584 * 86.11774 * 222.04260 * 18 16 15 20 20 C 1.36932 * 134.49550 * 204.63139 * 19 18 16 21 21 H 1.08008 * 120.00102 * 179.97438 * 20 19 18 22 22 C 1.38816 * 120.00123 * 0.02562 * 20 19 18 23 23 N 1.31620 * 119.99667 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46685 * 89.99707 * 24 22 20 26 26 H 1.48496 * 109.46826 * 209.99603 * 24 22 20 27 27 H 1.48493 * 109.47197 * 330.00030 * 24 22 20 28 28 C 1.47585 * 91.01266 * 24.63788 * 19 18 16 29 29 H 1.08997 * 109.46740 * 300.00597 * 1 2 3 30 30 H 1.09007 * 109.46677 * 60.00337 * 1 2 3 31 31 H 1.08996 * 109.47418 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47300 * 239.99459 * 2 1 3 33 33 H 1.09003 * 109.46959 * 120.00098 * 2 1 3 34 34 H 1.08996 * 109.47287 * 59.99457 * 3 2 1 35 35 H 1.09008 * 109.46676 * 300.00321 * 3 2 1 36 36 H 1.08992 * 110.36764 * 323.00234 * 7 6 4 37 37 H 1.09004 * 110.36358 * 85.33047 * 7 6 4 38 38 H 1.09006 * 111.00041 * 81.06839 * 8 7 6 39 39 H 1.08997 * 111.00744 * 204.87666 * 8 7 6 40 40 H 1.09006 * 110.72087 * 277.13814 * 9 8 7 41 41 H 1.09003 * 110.72278 * 153.86459 * 9 8 7 42 42 H 0.96997 * 120.00169 * 0.02562 * 14 12 10 43 43 H 1.08998 * 109.47668 * 300.00383 * 15 14 12 44 44 H 1.09002 * 109.46765 * 60.00021 * 15 14 12 45 45 H 0.96695 * 114.00125 * 309.66405 * 17 16 15 46 46 H 1.08994 * 113.76782 * 336.34480 * 18 16 15 47 47 H 1.09001 * 113.77085 * 107.74501 * 18 16 15 48 48 H 0.97000 * 119.99704 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.76795 * 221.05620 * 28 19 18 50 50 H 1.09007 * 113.87079 * 89.67581 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1535 0.3920 -0.0006 6 7 4.2210 2.6096 -0.0002 7 6 3.6131 3.9527 -0.0002 8 6 4.6946 4.8774 -0.6126 9 6 5.9951 4.2656 -0.0281 10 6 5.6841 2.7542 -0.0002 11 1 6.1042 2.2731 -0.8835 12 6 6.2606 2.1318 1.2452 13 8 5.5270 1.6094 2.0576 14 7 7.5916 2.1555 1.4564 15 6 8.1520 1.5509 2.6674 16 6 9.6734 1.7129 2.6612 17 8 10.0885 3.0677 2.4754 18 6 10.4000 0.7088 1.7482 19 7 11.3842 0.5810 2.8405 20 6 12.7023 0.2161 2.9068 21 1 13.2121 0.2039 3.8589 22 6 13.3838 -0.1371 1.7501 23 7 12.7627 -0.1218 0.5898 24 14 15.1821 -0.6342 1.8404 25 1 15.2802 -2.1011 2.0493 26 1 15.8611 -0.2683 0.5715 27 1 15.8345 0.0717 2.9723 28 6 10.3770 1.0042 3.8328 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.7134 3.9619 -0.6153 37 1 3.3806 4.2638 1.0184 38 1 4.6893 4.8171 -1.7010 39 1 4.5625 5.9069 -0.2798 40 1 6.1786 4.6399 0.9791 41 1 6.8449 4.4727 -0.6785 42 1 8.1783 2.5736 0.8069 43 1 7.7372 2.0452 3.5458 44 1 7.9000 0.4907 2.6942 45 1 9.6706 3.5074 1.7224 46 1 9.8331 -0.2027 1.5588 47 1 10.8066 1.1548 0.8405 48 1 13.2389 -0.3682 -0.2185 49 1 10.7652 1.6860 4.5894 50 1 9.8025 0.1807 4.2570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484311635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:08 Heat of formation + Delta-G solvation = -92.663817 kcal Electronic energy + Delta-G solvation = -30420.695851 eV Core-core repulsion = 26255.600955 eV Total energy + Delta-G solvation = -4165.094896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.80660 -40.78467 -39.75873 -38.21924 -36.52637 -35.33880 -35.29609 -34.04873 -32.72774 -31.22914 -29.92057 -28.67697 -27.59043 -26.78122 -25.01229 -23.86930 -22.75740 -22.56851 -21.46638 -21.03647 -20.24638 -19.01845 -18.65431 -18.18609 -17.63688 -17.22553 -16.89362 -16.65166 -16.49221 -16.16145 -15.82499 -15.68403 -15.26312 -15.00641 -14.94682 -14.58916 -14.36806 -14.25747 -14.13027 -13.91060 -13.78068 -13.46907 -13.27512 -13.01226 -12.90891 -12.84766 -12.70769 -12.62209 -12.58208 -12.24042 -12.21572 -11.94904 -11.80975 -11.75682 -11.64931 -11.45997 -11.01067 -10.95778 -10.86660 -10.75543 -10.19424 -9.69523 -8.97804 -7.93737 -5.27299 1.43387 1.45957 1.52734 1.54644 1.59076 1.90990 2.24385 2.44264 3.01275 3.24374 3.31060 3.41226 3.48729 3.57885 3.80256 3.82297 3.86388 3.97538 4.06607 4.13873 4.23517 4.31806 4.51685 4.56066 4.62967 4.65652 4.69562 4.69884 4.73354 4.79647 4.84435 4.89643 4.91585 4.94717 5.11045 5.12667 5.21216 5.24796 5.25472 5.27146 5.29371 5.35130 5.44408 5.45454 5.88283 6.38916 6.52777 6.81195 6.88090 7.13676 7.24789 7.55925 8.49151 9.23077 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.002362 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.728882 B =11850.117615 C =12460.004977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.518 3.482 5 O -0.585 6.585 6 N -0.609 5.609 7 C 0.090 3.910 8 C -0.119 4.119 9 C -0.119 4.119 10 C 0.113 3.887 11 H 0.099 0.901 12 C 0.503 3.497 13 O -0.570 6.570 14 N -0.714 5.714 15 C 0.122 3.878 16 C 0.103 3.897 17 O -0.535 6.535 18 C 0.144 3.856 19 N -0.635 5.635 20 C -0.235 4.235 21 H 0.083 0.917 22 C -0.068 4.068 23 N -0.953 5.953 24 Si 0.982 3.018 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.268 1.268 28 C 0.129 3.871 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.411 0.589 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.384 0.616 46 H 0.017 0.983 47 H 0.053 0.947 48 H 0.249 0.751 49 H 0.062 0.938 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.506 15.335 -5.531 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.161 4.161 4 C 0.309 3.691 5 O -0.465 6.465 6 N -0.343 5.343 7 C -0.031 4.031 8 C -0.157 4.157 9 C -0.157 4.157 10 C 0.005 3.995 11 H 0.117 0.883 12 C 0.289 3.711 13 O -0.448 6.448 14 N -0.368 5.368 15 C -0.004 4.004 16 C 0.060 3.940 17 O -0.341 6.341 18 C 0.018 3.982 19 N -0.361 5.361 20 C -0.363 4.363 21 H 0.101 0.899 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.810 3.190 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.193 1.193 28 C 0.003 3.997 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.143 0.857 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.247 0.753 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.233 0.767 46 H 0.035 0.965 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.099 14.113 -4.520 29.147 hybrid contribution 1.343 -0.951 -0.600 1.752 sum -23.755 13.162 -5.120 27.637 Atomic orbital electron populations 1.21733 0.92970 1.02413 1.02973 1.21273 0.97235 0.95056 1.01467 1.21706 0.88195 0.99959 1.06285 1.21259 0.91754 0.81781 0.74339 1.90708 1.71717 1.32801 1.51233 1.48482 1.05193 1.07411 1.73170 1.22722 0.98472 0.79656 1.02270 1.22825 0.91322 0.99836 1.01707 1.22764 1.01320 0.87649 1.04005 1.21687 0.83203 1.00087 0.94494 0.88344 1.21520 0.81984 0.78923 0.88665 1.90675 1.60157 1.45769 1.48204 1.45750 1.07246 1.59764 1.24048 1.21643 0.91847 0.98523 0.88363 1.23046 0.89513 0.83162 0.98235 1.86571 1.70581 1.23330 1.53648 1.22809 0.87773 0.94128 0.93518 1.46070 1.05734 1.79425 1.04867 1.19399 0.85067 1.37679 0.94167 0.89889 1.25659 1.02791 1.02622 0.95037 1.69988 1.37007 1.55294 0.97900 0.85022 0.79205 0.77753 0.77005 1.21415 1.21724 1.19260 1.22775 0.88925 0.95175 0.92785 0.91759 0.90896 0.92516 0.92888 0.94244 0.87399 0.85694 0.87342 0.91003 0.88881 0.86764 0.89908 0.86374 0.75276 0.90240 0.92374 0.76691 0.96494 0.92916 0.94202 0.92000 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.11 -2.16 5.22 30.59 0.16 -2.00 16 3 C -0.12 -1.97 4.71 29.85 0.14 -1.83 16 4 C 0.52 13.58 7.01 87.66 0.61 14.19 16 5 O -0.59 -22.21 15.24 10.65 0.16 -22.05 16 6 N -0.61 -12.30 2.84 -792.19 -2.25 -14.55 16 7 C 0.09 0.84 6.69 86.85 0.58 1.42 16 8 C -0.12 -0.61 7.08 31.98 0.23 -0.39 16 9 C -0.12 -1.20 6.40 31.78 0.20 -0.99 16 10 C 0.11 2.33 3.25 44.60 0.15 2.47 16 11 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 12 C 0.50 14.75 6.68 87.66 0.59 15.33 16 13 O -0.57 -22.07 15.04 10.66 0.16 -21.91 16 14 N -0.71 -19.10 5.27 -463.06 -2.44 -21.54 16 15 C 0.12 3.91 5.28 86.38 0.46 4.37 16 16 C 0.10 3.84 1.52 -10.14 -0.02 3.83 16 17 O -0.53 -18.54 13.51 -148.98 -2.01 -20.55 16 18 C 0.14 6.92 6.92 86.48 0.60 7.52 16 19 N -0.63 -33.96 3.70 -720.25 -2.66 -36.62 16 20 C -0.23 -13.71 10.70 84.04 0.90 -12.81 16 21 H 0.08 4.64 7.83 -2.91 -0.02 4.62 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 23 N -0.95 -58.50 11.38 21.65 0.25 -58.26 16 24 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 28 C 0.13 5.44 8.34 86.48 0.72 6.17 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 1.16 8.10 -2.38 -0.02 1.14 16 33 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.13 1.11 7.85 -2.38 -0.02 1.09 16 36 H 0.11 0.42 7.48 -2.39 -0.02 0.41 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.08 0.90 7.85 -2.38 -0.02 0.88 16 41 H 0.12 0.67 8.14 -2.39 -0.02 0.66 16 42 H 0.41 8.70 7.28 -92.71 -0.68 8.02 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 45 H 0.38 9.29 7.61 -74.06 -0.56 8.73 16 46 H 0.02 0.88 8.03 -2.39 -0.02 0.86 16 47 H 0.05 2.79 7.15 -2.39 -0.02 2.77 16 48 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 49 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 50 H 0.07 2.57 8.10 -2.38 -0.02 2.56 16 Total: -1.00 -90.36 404.35 -0.57 -90.93 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.29 Total: 22.91 kcal Atomic # 6 Polarization: 26.22 SS G_CDS: 6.50 Total: 32.72 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -7.11 Total: -130.98 kcal Atomic # 8 Polarization: -62.82 SS G_CDS: -1.69 Total: -64.51 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -90.36 -0.57 -90.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484311635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.737 kcal (2) G-P(sol) polarization free energy of solvation -90.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds