Wall clock time and date at job start Wed Apr 1 2020 00:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46972 * 2 1 4 4 H 1.08991 * 109.47155 * 55.00647 * 3 2 1 5 5 C 1.50707 * 109.46729 * 175.00139 * 3 2 1 6 6 O 1.21284 * 119.99679 * 120.00517 * 5 3 2 7 7 N 1.34769 * 120.00424 * 299.99836 * 5 3 2 8 8 C 1.46495 * 120.00597 * 180.02562 * 7 5 3 9 9 C 1.52992 * 109.47641 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.68176 * 295.52031 * 9 8 7 11 11 C 1.53296 * 109.68695 * 175.00129 * 9 8 7 12 12 O 1.42957 * 109.22579 * 187.97655 * 11 9 8 13 13 C 1.42956 * 114.16695 * 62.58231 * 12 11 9 14 14 C 1.53298 * 109.22201 * 297.41729 * 13 12 11 15 15 N 1.47154 * 108.38359 * 52.30567 * 14 13 12 16 16 C 1.36933 * 120.98324 * 129.48748 * 15 14 13 17 17 H 1.07999 * 119.99946 * 222.77605 * 16 15 14 18 18 C 1.38810 * 120.00294 * 42.77628 * 16 15 14 19 19 N 1.31612 * 120.00418 * 211.65777 * 18 16 15 20 20 Si 1.86802 * 119.99671 * 31.65442 * 18 16 15 21 21 H 1.48501 * 109.47301 * 84.94727 * 20 18 16 22 22 H 1.48505 * 109.46942 * 204.94635 * 20 18 16 23 23 H 1.48499 * 109.47243 * 324.94646 * 20 18 16 24 24 N 1.46496 * 109.47250 * 294.99947 * 3 2 1 25 25 C 1.46821 * 124.33466 * 119.93516 * 24 3 2 26 26 C 1.54476 * 105.44675 * 197.00265 * 25 24 3 27 27 C 1.54620 * 101.79931 * 334.62768 * 26 25 24 28 28 C 1.34424 * 124.35351 * 299.97463 * 24 3 2 29 29 O 1.21278 * 124.93902 * 359.55970 * 28 24 3 30 30 H 1.08996 * 109.47347 * 59.99790 * 1 2 3 31 31 H 1.09006 * 109.47250 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46992 * 299.99570 * 1 2 3 33 33 H 1.09000 * 109.47201 * 239.99925 * 2 1 3 34 34 H 1.08996 * 109.47347 * 120.00210 * 2 1 3 35 35 H 0.97006 * 119.99553 * 0.02562 * 7 5 3 36 36 H 1.08999 * 109.47287 * 300.00897 * 8 7 5 37 37 H 1.09006 * 109.46937 * 59.99909 * 8 7 5 38 38 H 1.08995 * 109.51075 * 307.90378 * 11 9 8 39 39 H 1.09003 * 109.51237 * 67.99923 * 11 9 8 40 40 H 1.08997 * 109.51737 * 57.34397 * 13 12 11 41 41 H 1.09002 * 109.51475 * 177.49386 * 13 12 11 42 42 H 1.08999 * 109.67959 * 172.02442 * 14 13 12 43 43 H 1.08998 * 109.68074 * 292.58053 * 14 13 12 44 44 H 0.96995 * 120.00665 * 180.02562 * 19 18 16 45 45 H 1.09003 * 110.23679 * 78.02081 * 25 24 3 46 46 H 1.08996 * 110.28289 * 316.00741 * 25 24 3 47 47 H 1.09006 * 110.96861 * 216.49018 * 26 25 24 48 48 H 1.08999 * 110.97105 * 92.76686 * 26 25 24 49 49 H 1.09001 * 110.48754 * 143.45647 * 27 26 25 50 50 H 1.09003 * 110.49200 * 265.97048 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5419 1.4442 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1298 0.8911 1.2030 8 6 5.5898 0.8933 1.3237 9 6 5.9946 0.2086 2.6306 10 1 5.6283 0.7886 3.4776 11 6 7.5217 0.0967 2.7034 12 8 7.8818 -0.7050 3.8310 13 6 7.4103 -2.0529 3.7652 14 6 5.8774 -2.0512 3.7469 15 7 5.4272 -1.1484 2.6755 16 6 4.5070 -1.5588 1.7482 17 1 4.6456 -1.3147 0.7053 18 6 3.3960 -2.2884 2.1486 19 7 2.8704 -3.1839 1.3398 20 14 2.6471 -1.9993 3.8353 21 1 1.6979 -0.8593 3.7667 22 1 1.9233 -3.2205 4.2714 23 1 3.7246 -1.6883 4.8087 24 7 1.6524 2.0975 -1.2518 25 6 0.8060 3.2945 -1.3326 26 6 0.3190 3.3559 -2.7973 27 6 1.4367 2.5829 -3.5348 28 6 2.0253 1.6794 -2.4737 29 8 2.7312 0.7181 -2.6934 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.5861 0.4915 1.9000 36 1 6.0247 0.3547 0.4818 37 1 5.9528 1.9211 1.3239 38 1 7.8966 -0.3683 1.7916 39 1 7.9551 1.0912 2.8095 40 1 7.7847 -2.5258 2.8573 41 1 7.7633 -2.6051 4.6362 42 1 5.5114 -3.0598 3.5549 43 1 5.4992 -1.6992 4.7067 44 1 2.0939 -3.6934 1.6194 45 1 1.3873 4.1843 -1.0907 46 1 -0.0437 3.2028 -0.6561 47 1 0.2620 4.3869 -3.1465 48 1 -0.6421 2.8543 -2.9101 49 1 1.0182 1.9920 -4.3496 50 1 2.1915 3.2722 -3.9132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484607225.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:16 Heat of formation + Delta-G solvation = -74.599040 kcal Electronic energy + Delta-G solvation = -32579.361689 eV Core-core repulsion = 28415.050141 eV Total energy + Delta-G solvation = -4164.311548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.50511 -39.08822 -38.21471 -36.04648 -35.39301 -34.50590 -33.44463 -31.81991 -30.94171 -30.71178 -27.73299 -27.44927 -27.05504 -24.94580 -23.34450 -22.14579 -21.92586 -21.74196 -20.29073 -19.90091 -18.57657 -17.25419 -16.72089 -16.56930 -15.83962 -15.78827 -15.70112 -15.09123 -14.92345 -14.67934 -14.32201 -14.10413 -14.03167 -13.79344 -13.55964 -13.44417 -13.11418 -12.99026 -12.76813 -12.63314 -12.48398 -12.41782 -12.01751 -11.88936 -11.59183 -11.53053 -11.38401 -11.03303 -10.94549 -10.89334 -10.75204 -10.71515 -10.50563 -10.31033 -9.91861 -9.66698 -9.42747 -9.26154 -9.18748 -8.50905 -8.32776 -8.17160 -6.79638 -6.18751 -3.57702 2.97242 3.12191 3.20236 3.30162 3.36344 3.40229 3.98435 4.35529 4.40292 4.46532 4.48531 4.70390 4.76152 5.07695 5.10952 5.22356 5.28602 5.31025 5.42866 5.51518 5.56857 5.60700 5.61611 5.66811 5.72416 5.76977 5.86347 5.90544 5.92338 5.97456 5.98795 6.03601 6.09702 6.19506 6.32112 6.40142 6.44289 6.48953 6.67158 6.81603 6.84952 6.89247 7.21498 7.45924 7.65939 7.85393 8.29857 8.32326 8.60358 8.81454 8.97057 9.53001 10.02162 10.93681 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.004317 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.776245 B = 6483.750541 C = 7584.077771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.146 3.854 4 H 0.102 0.898 5 C 0.502 3.498 6 O -0.546 6.546 7 N -0.689 5.689 8 C 0.141 3.859 9 C 0.121 3.879 10 H 0.043 0.957 11 C 0.056 3.944 12 O -0.390 6.390 13 C 0.043 3.957 14 C 0.108 3.892 15 N -0.600 5.600 16 C -0.278 4.278 17 H 0.084 0.916 18 C 0.056 3.944 19 N -0.865 5.865 20 Si 0.824 3.176 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.255 1.255 24 N -0.605 5.605 25 C 0.105 3.895 26 C -0.129 4.129 27 C -0.154 4.154 28 C 0.523 3.477 29 O -0.507 6.507 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.411 0.589 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.265 0.735 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.096 0.904 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 11.867 -1.058 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.040 3.960 4 H 0.120 0.880 5 C 0.286 3.714 6 O -0.424 6.424 7 N -0.342 5.342 8 C 0.017 3.983 9 C 0.014 3.986 10 H 0.060 0.940 11 C -0.023 4.023 12 O -0.308 6.308 13 C -0.035 4.035 14 C -0.017 4.017 15 N -0.326 5.326 16 C -0.406 4.406 17 H 0.102 0.898 18 C -0.148 4.148 19 N -0.502 5.502 20 Si 0.650 3.350 21 H -0.210 1.210 22 H -0.221 1.221 23 H -0.180 1.180 24 N -0.340 5.340 25 C -0.019 4.019 26 C -0.167 4.167 27 C -0.195 4.195 28 C 0.310 3.690 29 O -0.381 6.381 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.099 0.901 49 H 0.115 0.885 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.177 11.579 -1.640 12.419 hybrid contribution -1.067 -0.252 1.215 1.637 sum -5.244 11.328 -0.425 12.490 Atomic orbital electron populations 1.21678 0.95785 1.01788 1.00591 1.21907 0.95815 0.93232 1.06387 1.20867 0.92795 0.96026 0.86351 0.88011 1.20606 0.90088 0.78538 0.82216 1.90633 1.65081 1.46792 1.39943 1.45976 1.07549 1.57653 1.23052 1.21047 0.81111 0.98476 0.97696 1.21564 0.93170 0.88283 0.95548 0.93979 1.22874 0.95239 0.94896 0.89257 1.87810 1.76583 1.22981 1.43463 1.23128 0.96536 0.82927 1.00907 1.22035 0.91936 0.95719 0.92022 1.44359 1.48140 1.06958 1.33171 1.18740 0.99340 1.33274 0.89259 0.89839 1.25590 0.96847 0.96587 0.95769 1.70044 1.23197 1.19517 1.37469 0.87728 0.80888 0.77949 0.88442 1.21035 1.22060 1.18009 1.47912 1.51558 1.28967 1.05578 1.22048 0.94151 0.87959 0.97693 1.22550 0.98526 1.01544 0.94105 1.22307 0.99296 0.99552 0.98320 1.20623 0.79759 0.84724 0.83939 1.90759 1.36083 1.27910 1.83342 0.93339 0.92333 0.93380 0.89519 0.88379 0.75046 0.91511 0.92476 0.93044 0.89628 0.93262 0.89991 0.90648 0.94685 0.92511 0.91424 0.90594 0.89491 0.90131 0.88508 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.80 37.16 0.36 -1.78 16 2 C -0.13 -2.53 5.30 -26.73 -0.14 -2.68 16 3 C 0.15 2.49 2.67 -69.08 -0.18 2.30 16 4 H 0.10 1.42 8.07 -51.93 -0.42 1.00 16 5 C 0.50 10.16 6.85 -10.99 -0.08 10.09 16 6 O -0.55 -12.66 14.86 -9.70 -0.14 -12.80 16 7 N -0.69 -13.63 3.66 -60.30 -0.22 -13.85 16 8 C 0.14 2.68 4.52 -4.05 -0.02 2.66 16 9 C 0.12 2.26 3.27 -67.42 -0.22 2.04 16 10 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 11 C 0.06 0.95 6.29 37.31 0.23 1.18 16 12 O -0.39 -7.07 10.74 -35.23 -0.38 -7.45 16 13 C 0.04 0.76 6.98 37.31 0.26 1.02 16 14 C 0.11 2.20 4.78 -3.53 -0.02 2.18 16 15 N -0.60 -12.95 2.47 -164.30 -0.41 -13.36 16 16 C -0.28 -6.83 6.41 -15.06 -0.10 -6.93 16 17 H 0.08 2.36 6.68 -52.49 -0.35 2.01 16 18 C 0.06 1.41 3.84 -17.43 -0.07 1.34 16 19 N -0.86 -23.54 13.97 55.49 0.78 -22.76 16 20 Si 0.82 18.76 27.37 -169.99 -4.65 14.11 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.26 -5.69 4.95 56.52 0.28 -5.41 16 24 N -0.60 -9.26 2.08 -166.12 -0.35 -9.60 16 25 C 0.10 1.06 7.31 -3.09 -0.02 1.04 16 26 C -0.13 -1.06 7.18 -25.11 -0.18 -1.24 16 27 C -0.15 -1.79 6.86 -26.75 -0.18 -1.98 16 28 C 0.52 9.14 6.69 -10.86 -0.07 9.07 16 29 O -0.51 -11.63 15.33 -9.69 -0.15 -11.78 16 30 H 0.05 0.67 7.75 -51.93 -0.40 0.26 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.96 6.65 -51.93 -0.35 1.61 16 34 H 0.10 2.07 6.28 -51.93 -0.33 1.75 16 35 H 0.41 8.30 6.20 -40.82 -0.25 8.04 16 36 H 0.07 1.43 7.79 -51.93 -0.40 1.03 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.08 1.62 7.26 -51.93 -0.38 1.24 16 43 H 0.04 0.73 6.40 -51.93 -0.33 0.40 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -32.73 383.79 -8.54 -41.27 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -8.39 Total: 12.11 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: -0.42 Total: 18.33 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.20 Total: -59.58 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.67 Total: -32.03 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.65 Total: 14.11 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.73 -8.54 -41.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484607225.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.327 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds