Wall clock time and date at job start Wed Apr 1 2020 00:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46972 * 2 1 4 4 H 1.08991 * 109.47155 * 55.00647 * 3 2 1 5 5 C 1.50707 * 109.46729 * 175.00139 * 3 2 1 6 6 O 1.21284 * 119.99679 * 120.00517 * 5 3 2 7 7 N 1.34769 * 120.00424 * 299.99836 * 5 3 2 8 8 C 1.46495 * 120.00597 * 180.02562 * 7 5 3 9 9 C 1.52992 * 109.47641 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.68176 * 295.52031 * 9 8 7 11 11 C 1.53296 * 109.68695 * 175.00129 * 9 8 7 12 12 O 1.42957 * 109.22579 * 187.97655 * 11 9 8 13 13 C 1.42956 * 114.16695 * 62.58231 * 12 11 9 14 14 C 1.53298 * 109.22201 * 297.41729 * 13 12 11 15 15 N 1.47154 * 108.38359 * 52.30567 * 14 13 12 16 16 C 1.36933 * 120.98324 * 129.48748 * 15 14 13 17 17 H 1.07999 * 119.99946 * 222.77605 * 16 15 14 18 18 C 1.38810 * 120.00294 * 42.77628 * 16 15 14 19 19 N 1.31612 * 120.00418 * 211.65777 * 18 16 15 20 20 Si 1.86802 * 119.99671 * 31.65442 * 18 16 15 21 21 H 1.48501 * 109.47301 * 84.94727 * 20 18 16 22 22 H 1.48505 * 109.46942 * 204.94635 * 20 18 16 23 23 H 1.48499 * 109.47243 * 324.94646 * 20 18 16 24 24 N 1.46496 * 109.47250 * 294.99947 * 3 2 1 25 25 C 1.46821 * 124.33466 * 119.93516 * 24 3 2 26 26 C 1.54476 * 105.44675 * 197.00265 * 25 24 3 27 27 C 1.54620 * 101.79931 * 334.62768 * 26 25 24 28 28 C 1.34424 * 124.35351 * 299.97463 * 24 3 2 29 29 O 1.21278 * 124.93902 * 359.55970 * 28 24 3 30 30 H 1.08996 * 109.47347 * 59.99790 * 1 2 3 31 31 H 1.09006 * 109.47250 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46992 * 299.99570 * 1 2 3 33 33 H 1.09000 * 109.47201 * 239.99925 * 2 1 3 34 34 H 1.08996 * 109.47347 * 120.00210 * 2 1 3 35 35 H 0.97006 * 119.99553 * 0.02562 * 7 5 3 36 36 H 1.08999 * 109.47287 * 300.00897 * 8 7 5 37 37 H 1.09006 * 109.46937 * 59.99909 * 8 7 5 38 38 H 1.08995 * 109.51075 * 307.90378 * 11 9 8 39 39 H 1.09003 * 109.51237 * 67.99923 * 11 9 8 40 40 H 1.08997 * 109.51737 * 57.34397 * 13 12 11 41 41 H 1.09002 * 109.51475 * 177.49386 * 13 12 11 42 42 H 1.08999 * 109.67959 * 172.02442 * 14 13 12 43 43 H 1.08998 * 109.68074 * 292.58053 * 14 13 12 44 44 H 0.96995 * 120.00665 * 180.02562 * 19 18 16 45 45 H 1.09003 * 110.23679 * 78.02081 * 25 24 3 46 46 H 1.08996 * 110.28289 * 316.00741 * 25 24 3 47 47 H 1.09006 * 110.96861 * 216.49018 * 26 25 24 48 48 H 1.08999 * 110.97105 * 92.76686 * 26 25 24 49 49 H 1.09001 * 110.48754 * 143.45647 * 27 26 25 50 50 H 1.09003 * 110.49200 * 265.97048 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5419 1.4442 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1298 0.8911 1.2030 8 6 5.5898 0.8933 1.3237 9 6 5.9946 0.2086 2.6306 10 1 5.6283 0.7886 3.4776 11 6 7.5217 0.0967 2.7034 12 8 7.8818 -0.7050 3.8310 13 6 7.4103 -2.0529 3.7652 14 6 5.8774 -2.0512 3.7469 15 7 5.4272 -1.1484 2.6755 16 6 4.5070 -1.5588 1.7482 17 1 4.6456 -1.3147 0.7053 18 6 3.3960 -2.2884 2.1486 19 7 2.8704 -3.1839 1.3398 20 14 2.6471 -1.9993 3.8353 21 1 1.6979 -0.8593 3.7667 22 1 1.9233 -3.2205 4.2714 23 1 3.7246 -1.6883 4.8087 24 7 1.6524 2.0975 -1.2518 25 6 0.8060 3.2945 -1.3326 26 6 0.3190 3.3559 -2.7973 27 6 1.4367 2.5829 -3.5348 28 6 2.0253 1.6794 -2.4737 29 8 2.7312 0.7181 -2.6934 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.5861 0.4915 1.9000 36 1 6.0247 0.3547 0.4818 37 1 5.9528 1.9211 1.3239 38 1 7.8966 -0.3683 1.7916 39 1 7.9551 1.0912 2.8095 40 1 7.7847 -2.5258 2.8573 41 1 7.7633 -2.6051 4.6362 42 1 5.5114 -3.0598 3.5549 43 1 5.4992 -1.6992 4.7067 44 1 2.0939 -3.6934 1.6194 45 1 1.3873 4.1843 -1.0907 46 1 -0.0437 3.2028 -0.6561 47 1 0.2620 4.3869 -3.1465 48 1 -0.6421 2.8543 -2.9101 49 1 1.0182 1.9920 -4.3496 50 1 2.1915 3.2722 -3.9132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484607225.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:14 Heat of formation + Delta-G solvation = -97.492824 kcal Electronic energy + Delta-G solvation = -32580.354438 eV Core-core repulsion = 28415.050141 eV Total energy + Delta-G solvation = -4165.304297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.81286 -40.59712 -39.72922 -37.39033 -37.00291 -35.82459 -35.16847 -33.63013 -32.48332 -31.89229 -29.34548 -28.57188 -28.34160 -26.41184 -25.11022 -23.66960 -23.25661 -22.65981 -21.78603 -21.55183 -19.99432 -18.86048 -18.14101 -17.96488 -17.46326 -17.21648 -16.95061 -16.58615 -16.42831 -16.15196 -15.98258 -15.59454 -15.47798 -15.20361 -15.12719 -14.59011 -14.55550 -14.48822 -14.27233 -14.00538 -13.78369 -13.60716 -13.48624 -13.33282 -13.05220 -12.89085 -12.67910 -12.57413 -12.38655 -12.27527 -12.12727 -12.08969 -11.94653 -11.76400 -11.59283 -11.33420 -11.00331 -10.80162 -10.60698 -10.37670 -9.86081 -9.60594 -8.59116 -8.18095 -5.55485 1.37155 1.47713 1.54665 1.61960 1.73214 1.96240 2.47968 2.51413 2.88454 3.00831 3.28763 3.47734 3.68291 3.81586 3.91066 3.93873 3.97887 4.10303 4.14477 4.23055 4.26815 4.37620 4.38603 4.44634 4.48099 4.56026 4.58934 4.69106 4.70202 4.72784 4.75687 4.81514 4.87495 4.95492 5.04668 5.07490 5.11869 5.16807 5.24666 5.26944 5.34913 5.58800 5.64591 5.92010 6.21464 6.27731 6.31981 6.69158 6.93457 7.28392 7.39665 7.59541 8.11060 8.98886 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.004317 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.776245 B = 6483.750541 C = 7584.077771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.149 3.851 4 H 0.143 0.857 5 C 0.493 3.507 6 O -0.582 6.582 7 N -0.688 5.688 8 C 0.146 3.854 9 C 0.123 3.877 10 H 0.059 0.941 11 C 0.059 3.941 12 O -0.390 6.390 13 C 0.050 3.950 14 C 0.105 3.895 15 N -0.612 5.612 16 C -0.257 4.257 17 H 0.033 0.967 18 C 0.022 3.978 19 N -0.914 5.914 20 Si 0.884 3.116 21 H -0.268 1.268 22 H -0.308 1.308 23 H -0.242 1.242 24 N -0.604 5.604 25 C 0.094 3.906 26 C -0.112 4.112 27 C -0.149 4.149 28 C 0.500 3.500 29 O -0.582 6.582 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.029 0.971 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.122 0.878 40 H 0.040 0.960 41 H 0.115 0.885 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.262 0.738 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.122 0.878 48 H 0.097 0.903 49 H 0.105 0.895 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 15.065 1.024 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.163 4.163 3 C 0.042 3.958 4 H 0.160 0.840 5 C 0.278 3.722 6 O -0.462 6.462 7 N -0.340 5.340 8 C 0.021 3.979 9 C 0.018 3.982 10 H 0.077 0.923 11 C -0.020 4.020 12 O -0.308 6.308 13 C -0.028 4.028 14 C -0.019 4.019 15 N -0.339 5.339 16 C -0.386 4.386 17 H 0.050 0.950 18 C -0.179 4.179 19 N -0.554 5.554 20 Si 0.709 3.291 21 H -0.194 1.194 22 H -0.236 1.236 23 H -0.166 1.166 24 N -0.338 5.338 25 C -0.027 4.027 26 C -0.149 4.149 27 C -0.189 4.189 28 C 0.290 3.710 29 O -0.461 6.461 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.248 0.752 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.140 0.860 40 H 0.059 0.941 41 H 0.133 0.867 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.124 0.876 47 H 0.140 0.860 48 H 0.115 0.885 49 H 0.123 0.877 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.620 14.847 0.486 15.883 hybrid contribution -0.518 -1.268 0.504 1.459 sum -6.138 13.580 0.990 14.935 Atomic orbital electron populations 1.21619 0.92594 1.01838 1.02831 1.21683 0.98442 0.93743 1.02411 1.20833 0.90464 0.95694 0.88857 0.83967 1.21300 0.91733 0.77693 0.81460 1.90600 1.66286 1.48509 1.40850 1.45981 1.07820 1.57195 1.22976 1.21025 0.80886 0.99316 0.96668 1.21692 0.94411 0.86645 0.95490 0.92334 1.22948 0.93750 0.96525 0.88734 1.87822 1.76355 1.22992 1.43652 1.23094 0.94332 0.83267 1.02115 1.22071 0.93982 0.94471 0.91422 1.44442 1.47861 1.08692 1.32904 1.18226 1.00059 1.32603 0.87724 0.94964 1.25914 0.97033 0.96078 0.98839 1.70162 1.24023 1.21302 1.39920 0.86793 0.80402 0.77474 0.84430 1.19419 1.23594 1.16564 1.48144 1.51357 1.30003 1.04263 1.22501 0.94408 0.85877 0.99913 1.22622 0.97435 1.03109 0.91751 1.22347 1.00580 0.98920 0.97033 1.21800 0.78881 0.84385 0.85978 1.90714 1.39448 1.31252 1.84676 0.91671 0.93498 0.90331 0.94757 0.91193 0.75244 0.95213 0.90070 0.94154 0.86010 0.94145 0.86668 0.92447 0.94091 0.92850 0.90308 0.87611 0.85994 0.88474 0.87667 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.80 71.98 0.71 -3.16 16 2 C -0.12 -4.84 5.30 30.59 0.16 -4.67 16 3 C 0.15 5.03 2.67 44.25 0.12 5.15 16 4 H 0.14 3.59 8.07 -2.39 -0.02 3.57 16 5 C 0.49 20.64 6.85 87.66 0.60 21.24 16 6 O -0.58 -28.18 14.86 11.54 0.17 -28.01 16 7 N -0.69 -27.97 3.66 -463.08 -1.70 -29.67 16 8 C 0.15 5.65 4.52 86.38 0.39 6.04 16 9 C 0.12 4.50 3.27 44.96 0.15 4.65 16 10 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 11 C 0.06 1.89 6.29 72.08 0.45 2.34 16 12 O -0.39 -13.14 10.74 -148.98 -1.60 -14.74 16 13 C 0.05 1.67 6.98 72.08 0.50 2.17 16 14 C 0.11 4.18 4.78 86.35 0.41 4.59 16 15 N -0.61 -26.57 2.47 -673.73 -1.66 -28.24 16 16 C -0.26 -13.20 6.41 84.03 0.54 -12.66 16 17 H 0.03 2.00 6.68 -2.91 -0.02 1.98 16 18 C 0.02 1.15 3.84 84.86 0.33 1.48 16 19 N -0.91 -52.55 13.97 21.65 0.30 -52.25 16 20 Si 0.88 39.07 27.37 68.60 1.88 40.95 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.24 -10.05 4.95 99.48 0.49 -9.56 16 24 N -0.60 -17.94 2.08 -798.08 -1.66 -19.60 16 25 C 0.09 1.55 7.31 86.82 0.63 2.18 16 26 C -0.11 -1.36 7.18 31.65 0.23 -1.13 16 27 C -0.15 -3.24 6.86 30.58 0.21 -3.03 16 28 C 0.50 17.93 6.69 87.90 0.59 18.51 16 29 O -0.58 -28.84 15.33 11.56 0.18 -28.67 16 30 H 0.06 1.68 7.75 -2.39 -0.02 1.66 16 31 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.03 1.68 6.65 -2.39 -0.02 1.66 16 34 H 0.07 3.09 6.28 -2.39 -0.01 3.08 16 35 H 0.41 16.75 6.20 -92.70 -0.58 16.18 16 36 H 0.03 1.36 7.79 -2.39 -0.02 1.34 16 37 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.12 3.06 8.14 -2.39 -0.02 3.05 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.06 2.47 7.26 -2.39 -0.02 2.45 16 43 H 0.04 1.60 6.40 -2.39 -0.02 1.58 16 44 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.11 1.17 8.14 -2.39 -0.02 1.16 16 47 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 48 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -79.95 383.79 2.08 -77.87 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.15 Total: 38.64 kcal Atomic # 6 Polarization: 37.68 SS G_CDS: 6.02 Total: 43.70 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -4.72 Total: -129.75 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -1.25 Total: -71.41 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.88 Total: 40.95 kcal Total: -79.95 2.08 -77.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484607225.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.618 kcal (2) G-P(sol) polarization free energy of solvation -79.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds