Wall clock time and date at job start Tue Mar 31 2020 23:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47136 * 2 1 4 4 H 1.09000 * 109.46860 * 304.99678 * 3 2 1 5 5 C 1.52998 * 109.47755 * 64.99427 * 3 2 1 6 6 C 1.50700 * 109.47253 * 185.00139 * 3 2 1 7 7 O 1.21280 * 120.00020 * 359.97438 * 6 3 2 8 8 N 1.34773 * 119.99913 * 179.97438 * 6 3 2 9 9 C 1.46511 * 119.99829 * 179.97438 * 8 6 3 10 10 H 1.09000 * 110.93059 * 31.35278 * 9 8 6 11 11 C 1.55061 * 110.86888 * 267.70916 * 9 8 6 12 12 O 1.44596 * 103.66078 * 205.31455 * 11 9 8 13 13 C 1.42853 * 106.74380 * 39.10546 * 12 11 9 14 14 C 1.52674 * 115.92488 * 202.56438 * 13 12 11 15 15 N 1.47637 * 87.73234 * 218.38968 * 14 13 12 16 16 C 1.46893 * 111.00103 * 138.08050 * 15 14 13 17 17 C 1.50706 * 109.47176 * 169.99936 * 16 15 14 18 18 O 1.21295 * 119.99584 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00020 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99737 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00254 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99943 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00135 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 119.99954 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47152 * 89.99894 * 24 22 20 26 26 H 1.48501 * 109.47252 * 209.99373 * 24 22 20 27 27 H 1.48500 * 109.47362 * 329.99455 * 24 22 20 28 28 C 1.47633 * 88.00848 * 26.32091 * 15 14 13 29 29 C 1.53339 * 108.31032 * 334.28944 * 13 12 11 30 30 H 1.08998 * 109.47520 * 60.00883 * 1 2 3 31 31 H 1.09003 * 109.47334 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47683 * 300.00506 * 1 2 3 33 33 H 1.08995 * 109.46989 * 239.99256 * 2 1 3 34 34 H 1.09002 * 109.46877 * 119.99756 * 2 1 3 35 35 H 1.08998 * 109.47377 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47153 * 300.00580 * 5 3 2 37 37 H 1.09000 * 109.46732 * 60.00172 * 5 3 2 38 38 H 0.97003 * 120.00330 * 359.97438 * 8 6 3 39 39 H 1.09000 * 110.58637 * 323.85796 * 11 9 8 40 40 H 1.08996 * 110.58272 * 86.61454 * 11 9 8 41 41 H 1.08996 * 113.50719 * 103.67274 * 14 13 12 42 42 H 1.08998 * 113.56878 * 333.11413 * 14 13 12 43 43 H 1.09001 * 109.46739 * 50.00345 * 16 15 14 44 44 H 1.09000 * 109.47767 * 290.00604 * 16 15 14 45 45 H 0.96994 * 119.99756 * 0.02562 * 19 17 16 46 46 H 0.96994 * 120.00084 * 179.97438 * 23 22 20 47 47 H 1.08999 * 113.51032 * 88.40197 * 28 15 14 48 48 H 1.08996 * 113.50827 * 218.96813 * 28 15 14 49 49 H 1.09004 * 110.55945 * 120.20200 * 29 13 12 50 50 H 1.08995 * 110.56325 * 242.90009 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9814 -0.8419 5 6 1.6351 2.1267 1.3072 6 6 3.5418 1.4443 -0.1239 7 8 4.1450 0.3951 -0.2038 8 7 4.2147 2.6118 -0.1459 9 6 5.6749 2.6135 -0.2657 10 1 6.0187 1.7600 -0.8500 11 6 6.3440 2.6310 1.1330 12 8 7.6359 3.2317 0.8862 13 6 7.4282 4.2787 -0.0633 14 6 8.6528 4.6980 -0.8729 15 7 8.1782 6.0914 -0.7589 16 6 9.2933 7.0064 -0.4817 17 6 8.8194 8.4308 -0.6149 18 8 7.6659 8.6609 -0.9111 19 7 9.6773 9.4488 -0.4048 20 6 9.2460 10.7446 -0.5254 21 1 8.2187 10.9495 -0.7884 22 6 10.1302 11.7942 -0.3083 23 7 9.7170 13.0362 -0.4245 24 14 11.9068 11.4397 0.1472 25 1 12.7233 11.3351 -1.0888 26 1 12.4300 12.5416 0.9942 27 1 11.9795 10.1607 0.8983 28 6 7.4915 5.7011 0.4883 29 6 6.1767 3.9438 -0.8836 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9981 3.1544 1.3070 36 1 0.5488 2.1253 1.3968 37 1 2.0697 1.5877 2.1491 38 1 3.7323 3.4510 -0.0823 39 1 5.7647 3.2396 1.8274 40 1 6.4571 1.6169 1.5164 41 1 8.6487 4.3195 -1.8950 42 1 9.5973 4.5171 -0.3599 43 1 10.0988 6.8235 -1.1930 44 1 9.6583 6.8381 0.5315 45 1 10.5997 9.2647 -0.1683 46 1 10.3341 13.7689 -0.2725 47 1 8.1162 5.7957 1.3765 48 1 6.5124 6.1646 0.6090 49 1 5.4252 4.7255 -0.7717 50 1 6.4327 3.8080 -1.9343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484793318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:14 Heat of formation + Delta-G solvation = -78.030205 kcal Electronic energy + Delta-G solvation = -29474.932384 eV Core-core repulsion = 25310.472049 eV Total energy + Delta-G solvation = -4164.460335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.30871 -40.20613 -38.50431 -37.38053 -35.85102 -34.98212 -33.94043 -31.73179 -31.42693 -30.53254 -29.41257 -27.08939 -26.15943 -25.74185 -24.81665 -23.00595 -22.69620 -21.40006 -20.26732 -19.46496 -19.35881 -18.41153 -17.65956 -16.96333 -16.31867 -16.14427 -15.92705 -15.85669 -15.33630 -14.99899 -14.81974 -14.79199 -14.29581 -13.98853 -13.82572 -13.73442 -13.43322 -13.22316 -13.08528 -13.02514 -12.58592 -12.50913 -12.30905 -12.15283 -12.09139 -12.02179 -11.98083 -11.81932 -11.40738 -11.25817 -11.18075 -11.10536 -11.04274 -10.74413 -10.59998 -10.06955 -9.97826 -9.79778 -9.56467 -9.37800 -8.97588 -8.36448 -8.17702 -6.31160 -3.82520 2.26831 2.68340 3.02077 3.06492 3.14642 3.50892 3.73777 3.93596 4.09888 4.16119 4.17019 4.27154 4.35419 4.39658 4.47699 4.68909 4.79795 4.81213 4.87212 4.94016 5.05604 5.08088 5.12155 5.16030 5.30274 5.34325 5.37862 5.43072 5.43970 5.47922 5.52625 5.55759 5.58920 5.60843 5.67668 5.69234 5.72808 5.81844 5.87942 5.91544 5.93451 6.08790 6.34618 6.69335 6.98567 7.09453 7.58024 7.84749 8.13946 8.60483 8.95362 9.42522 9.84069 10.82058 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024691 B = 0.001871 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.723110 B =14961.869169 C =15665.541391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.099 0.901 5 C -0.147 4.147 6 C 0.518 3.482 7 O -0.538 6.538 8 N -0.719 5.719 9 C 0.111 3.889 10 H 0.108 0.892 11 C 0.038 3.962 12 O -0.353 6.353 13 C 0.075 3.925 14 C 0.005 3.995 15 N -0.433 5.433 16 C 0.007 3.993 17 C 0.456 3.544 18 O -0.557 6.557 19 N -0.593 5.593 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.006 4.006 29 C -0.123 4.123 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.404 0.596 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.655 -25.180 3.051 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.117 0.883 5 C -0.205 4.205 6 C 0.305 3.695 7 O -0.414 6.414 8 N -0.372 5.372 9 C 0.005 3.995 10 H 0.126 0.874 11 C -0.040 4.040 12 O -0.270 6.270 13 C 0.034 3.966 14 C -0.124 4.124 15 N -0.156 5.156 16 C -0.125 4.125 17 C 0.241 3.759 18 O -0.438 6.438 19 N -0.233 5.233 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.135 4.135 29 C -0.161 4.161 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.240 0.760 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.202 0.798 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.110 0.890 49 H 0.110 0.890 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.093 -25.256 2.342 28.099 hybrid contribution 1.757 0.293 1.043 2.064 sum -10.335 -24.963 3.385 27.229 Atomic orbital electron populations 1.21848 0.95371 1.01992 1.01960 1.21343 0.95450 0.94026 1.03523 1.21379 0.91445 0.99670 1.00816 0.88306 1.21848 1.02633 1.00270 0.95711 1.20794 0.90131 0.83433 0.75137 1.90709 1.70372 1.31373 1.48973 1.45984 1.06846 1.09185 1.75223 1.22629 0.80104 0.99681 0.97080 0.87426 1.23960 0.84578 0.99153 0.96284 1.88830 1.28089 1.48625 1.61480 1.22944 0.95925 0.87795 0.89952 1.24088 0.96825 0.90549 1.00943 1.68792 1.17909 1.02659 1.26221 1.22539 0.94463 0.94364 1.01122 1.19530 0.86894 0.85286 0.84157 1.90557 1.18106 1.84432 1.50721 1.42212 1.10753 1.06600 1.63767 1.19419 0.99857 0.79148 1.44855 0.86316 1.25029 0.98415 0.94967 0.97761 1.69620 1.35800 0.98137 1.48682 0.86673 0.85096 0.78432 0.79181 1.19613 1.20192 1.19569 1.24401 1.02197 0.93333 0.93555 1.22721 0.96597 0.96108 1.00707 0.92635 0.92423 0.92374 0.91117 0.91303 0.92014 0.90970 0.91980 0.76050 0.91672 0.88538 0.88755 0.90397 0.89056 0.91958 0.79765 0.91638 0.90517 0.88952 0.88956 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 37.16 0.36 -0.39 16 2 C -0.11 -0.70 4.75 -26.74 -0.13 -0.82 16 3 C -0.11 -0.68 2.72 -91.78 -0.25 -0.93 16 4 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -0.69 8.84 37.16 0.33 -0.36 16 6 C 0.52 4.59 7.15 -10.99 -0.08 4.51 16 7 O -0.54 -6.83 15.56 5.56 0.09 -6.74 16 8 N -0.72 -5.38 5.08 -51.71 -0.26 -5.64 16 9 C 0.11 1.00 3.51 -65.77 -0.23 0.77 16 10 H 0.11 1.12 7.55 -51.93 -0.39 0.72 16 11 C 0.04 0.37 7.42 38.25 0.28 0.66 16 12 O -0.35 -4.21 11.32 -35.23 -0.40 -4.61 16 13 C 0.07 0.86 1.65 -90.77 -0.15 0.71 16 14 C 0.00 0.06 7.21 -7.14 -0.05 0.01 16 15 N -0.43 -6.73 5.78 -246.11 -1.42 -8.15 16 16 C 0.01 0.12 5.29 -4.98 -0.03 0.10 16 17 C 0.46 10.41 7.85 -10.98 -0.09 10.32 16 18 O -0.56 -15.04 16.01 5.54 0.09 -14.95 16 19 N -0.59 -14.17 5.09 -10.96 -0.06 -14.23 16 20 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 21 H 0.12 3.84 7.39 -52.48 -0.39 3.46 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 24 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 C -0.01 -0.08 7.23 -7.13 -0.05 -0.13 16 29 C -0.12 -1.18 6.20 -25.49 -0.16 -1.34 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16 33 H 0.07 0.55 7.95 -51.93 -0.41 0.14 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.24 7.57 -51.93 -0.39 -0.15 16 36 H 0.07 0.27 6.57 -51.93 -0.34 -0.07 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 2.18 7.83 -40.82 -0.32 1.86 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.02 7.91 -51.93 -0.41 0.61 16 42 H 0.08 0.88 7.91 -51.93 -0.41 0.47 16 43 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 44 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 45 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.08 1.05 7.42 -51.93 -0.39 0.66 16 48 H 0.09 1.33 7.91 -51.93 -0.41 0.92 16 49 H 0.09 0.86 7.42 -51.93 -0.39 0.48 16 50 H 0.09 0.88 7.81 -51.93 -0.41 0.48 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -35.13 400.67 -8.51 -43.64 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.16 Total: 9.62 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -0.49 Total: 5.36 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.97 Total: -53.02 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.22 Total: -26.30 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.13 -8.51 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484793318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.393 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds