Wall clock time and date at job start Tue Mar 31 2020 23:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46994 * 2 1 4 4 H 1.09001 * 109.46704 * 55.00793 * 3 2 1 5 5 C 1.52995 * 109.47068 * 294.99961 * 3 2 1 6 6 C 1.50701 * 109.46601 * 174.99871 * 3 2 1 7 7 O 1.21278 * 120.00553 * 0.02562 * 6 3 2 8 8 N 1.34782 * 119.99745 * 179.97438 * 6 3 2 9 9 C 1.46495 * 119.99823 * 180.02562 * 8 6 3 10 10 H 1.08996 * 110.77668 * 328.53762 * 9 8 6 11 11 C 1.55061 * 111.05002 * 92.19414 * 9 8 6 12 12 O 1.44599 * 103.67122 * 81.70926 * 11 9 8 13 13 C 1.42848 * 106.73735 * 39.10088 * 12 11 9 14 14 C 1.52679 * 115.92062 * 202.58532 * 13 12 11 15 15 N 1.47638 * 87.72790 * 218.38635 * 14 13 12 16 16 C 1.46903 * 111.00078 * 138.08051 * 15 14 13 17 17 C 1.50694 * 109.47066 * 169.99880 * 16 15 14 18 18 O 1.21297 * 120.00199 * 359.97438 * 17 16 15 19 19 N 1.34784 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99735 * 179.72439 * 19 17 16 21 21 H 1.07998 * 120.00618 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99464 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00058 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99669 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47200 * 60.00190 * 24 22 20 26 26 H 1.48498 * 109.46669 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47156 * 300.00205 * 24 22 20 28 28 C 1.47631 * 88.01378 * 26.31493 * 15 14 13 29 29 C 1.53331 * 108.31385 * 334.30193 * 13 12 11 30 30 H 1.09001 * 109.47711 * 59.99978 * 1 2 3 31 31 H 1.09006 * 109.47730 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47218 * 299.99588 * 1 2 3 33 33 H 1.09000 * 109.46940 * 239.99939 * 2 1 3 34 34 H 1.08996 * 109.47210 * 120.00540 * 2 1 3 35 35 H 1.08996 * 109.47130 * 60.00758 * 5 3 2 36 36 H 1.09009 * 109.46582 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47604 * 299.99767 * 5 3 2 38 38 H 0.96999 * 119.99927 * 0.02562 * 8 6 3 39 39 H 1.08997 * 110.58771 * 200.25982 * 11 9 8 40 40 H 1.09006 * 110.58211 * 323.01521 * 11 9 8 41 41 H 1.08991 * 113.51378 * 103.67346 * 14 13 12 42 42 H 1.08996 * 113.56565 * 333.10492 * 14 13 12 43 43 H 1.08998 * 109.46809 * 49.99981 * 16 15 14 44 44 H 1.09002 * 109.47056 * 289.99722 * 16 15 14 45 45 H 0.97000 * 119.99339 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99610 * 179.97438 * 23 22 20 47 47 H 1.09003 * 113.50650 * 88.39529 * 28 15 14 48 48 H 1.08998 * 113.51040 * 218.96802 * 28 15 14 49 49 H 1.09006 * 110.56431 * 120.19537 * 29 13 12 50 50 H 1.09002 * 110.56410 * 243.03689 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5418 1.4442 0.1239 7 8 4.1450 0.3951 0.2038 8 7 4.2149 2.6117 0.1448 9 6 5.6750 2.6134 0.2647 10 1 6.0157 1.7605 0.8516 11 6 6.3484 2.6271 -1.1320 12 8 6.3118 4.0208 -1.5155 13 6 6.5891 4.7791 -0.3371 14 6 6.0956 6.2240 -0.3417 15 7 7.3425 6.5902 0.3589 16 6 7.9038 7.8356 -0.1815 17 6 9.0258 8.3078 0.7067 18 8 9.3279 7.6700 1.6933 19 7 9.6930 9.4396 0.4056 20 6 10.7100 9.8722 1.2168 21 1 10.9769 9.3061 2.0969 22 6 11.3981 11.0387 0.9059 23 7 11.0737 11.7273 -0.1652 24 14 12.7844 11.6279 2.0108 25 1 13.8452 10.5905 2.0699 26 1 13.3520 12.8865 1.4642 27 1 12.2574 11.8754 3.3769 28 6 7.9772 5.4106 -0.2619 29 6 6.1770 3.9442 0.8812 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3635 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5489 2.1253 -1.3968 36 1 1.9989 3.1541 -1.3074 37 1 2.0698 1.5876 -2.1491 38 1 3.7326 3.4508 0.0806 39 1 7.3778 2.2750 -1.0646 40 1 5.7817 2.0183 -1.8366 41 1 5.1986 6.3790 0.2576 42 1 6.0156 6.6539 -1.3401 43 1 7.1257 8.5979 -0.2203 44 1 8.2868 7.6556 -1.1860 45 1 9.4506 9.9502 -0.3827 46 1 11.5539 12.5418 -0.3820 47 1 8.4148 5.6161 -1.2388 48 1 8.6595 4.8829 0.4044 49 1 7.0340 3.7660 1.5308 50 1 5.3754 4.4381 1.4304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484793319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:17 Heat of formation + Delta-G solvation = -85.439311 kcal Electronic energy + Delta-G solvation = -29565.125006 eV Core-core repulsion = 25400.343389 eV Total energy + Delta-G solvation = -4164.781618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.28898 -40.12382 -38.35918 -37.25847 -35.80539 -34.75795 -33.88093 -31.53033 -31.21204 -30.40760 -29.42476 -26.99368 -26.09830 -25.71624 -24.84143 -23.02546 -22.71816 -21.29978 -20.17461 -19.41038 -19.22516 -17.92399 -17.57947 -17.10591 -16.18836 -16.04481 -15.85468 -15.69648 -15.61281 -14.96668 -14.69265 -14.41710 -14.34067 -13.97666 -13.93219 -13.75363 -13.44745 -13.16214 -13.04092 -12.70124 -12.54497 -12.29142 -12.16532 -12.13652 -11.97714 -11.84560 -11.74419 -11.53807 -11.41939 -11.22937 -11.18732 -11.08936 -11.01528 -10.64552 -10.43669 -10.20342 -10.01089 -9.83663 -9.48321 -9.24297 -8.87792 -8.22410 -7.95256 -6.40642 -3.81467 2.31135 2.79472 3.20623 3.26110 3.30410 3.51487 3.90827 3.98927 4.15992 4.21463 4.28640 4.31785 4.42200 4.43158 4.50556 4.70905 4.87644 4.94968 5.00514 5.04025 5.07117 5.11772 5.15286 5.23090 5.36337 5.39381 5.43145 5.45357 5.46399 5.54521 5.55060 5.61840 5.63010 5.68396 5.71226 5.72065 5.81053 5.83747 5.94851 5.99007 6.15899 6.25226 6.46566 6.75119 7.09995 7.16600 7.55787 7.89908 8.06642 8.63124 9.19263 9.55500 10.07898 10.77132 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035211 B = 0.001755 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.019524 B =15951.778124 C =16088.644184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.098 0.902 5 C -0.146 4.146 6 C 0.518 3.482 7 O -0.541 6.541 8 N -0.716 5.716 9 C 0.108 3.892 10 H 0.109 0.891 11 C 0.038 3.962 12 O -0.356 6.356 13 C 0.071 3.929 14 C 0.005 3.995 15 N -0.432 5.432 16 C 0.011 3.989 17 C 0.447 3.553 18 O -0.575 6.575 19 N -0.566 5.566 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.006 4.006 29 C -0.123 4.123 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.403 0.597 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.391 0.609 46 H 0.272 0.728 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.423 -18.279 -4.505 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.116 0.884 5 C -0.204 4.204 6 C 0.304 3.696 7 O -0.417 6.417 8 N -0.368 5.368 9 C 0.003 3.997 10 H 0.127 0.873 11 C -0.040 4.040 12 O -0.274 6.274 13 C 0.031 3.969 14 C -0.124 4.124 15 N -0.156 5.156 16 C -0.121 4.121 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.203 5.203 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.135 4.135 29 C -0.161 4.161 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.238 0.762 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.110 0.890 49 H 0.119 0.881 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.701 -19.074 -3.337 27.624 hybrid contribution 0.529 1.233 -0.833 1.579 sum -19.172 -17.841 -4.170 26.519 Atomic orbital electron populations 1.21848 0.95420 1.01965 1.01916 1.21341 0.95399 0.94080 1.03513 1.21370 0.91590 0.99588 1.00730 0.88435 1.21837 1.02462 1.00337 0.95732 1.20770 0.90098 0.83468 0.75233 1.90702 1.70398 1.31394 1.49250 1.45985 1.06944 1.09018 1.74822 1.22567 0.80470 0.99627 0.97078 0.87298 1.24005 1.00532 0.83683 0.95752 1.88807 1.91382 1.16511 1.30661 1.23045 0.96644 0.91742 0.85491 1.24070 0.96649 0.92557 0.99121 1.68792 1.02376 1.00559 1.43835 1.22495 0.98545 0.94005 0.97086 1.19633 0.85537 0.83639 0.88032 1.90520 1.68895 1.57230 1.29225 1.41860 1.31196 1.21496 1.25797 1.19649 1.09412 1.06745 1.07067 0.88006 1.25249 0.99241 0.96329 0.97104 1.69604 1.42189 1.17124 1.25508 0.85920 0.80650 0.77857 0.79802 1.19940 1.20986 1.19916 1.24382 0.96540 0.93161 0.99407 1.22808 1.03150 0.93206 0.96947 0.92395 0.92442 0.92670 0.91318 0.91128 0.91072 0.92008 0.92010 0.76199 0.90870 0.88834 0.89122 0.90537 0.89260 0.92099 0.77545 0.91860 0.90596 0.88976 0.88078 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.67 37.16 0.36 -0.40 16 2 C -0.11 -0.71 4.75 -26.73 -0.13 -0.84 16 3 C -0.11 -0.70 2.72 -91.77 -0.25 -0.95 16 4 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -0.73 8.84 37.15 0.33 -0.40 16 6 C 0.52 4.74 7.15 -10.98 -0.08 4.66 16 7 O -0.54 -6.97 15.56 5.56 0.09 -6.88 16 8 N -0.72 -5.68 5.05 -51.72 -0.26 -5.94 16 9 C 0.11 0.99 3.51 -65.77 -0.23 0.76 16 10 H 0.11 1.07 7.54 -51.93 -0.39 0.68 16 11 C 0.04 0.38 7.42 38.25 0.28 0.66 16 12 O -0.36 -4.16 11.32 -35.23 -0.40 -4.56 16 13 C 0.07 0.82 1.65 -90.78 -0.15 0.67 16 14 C 0.01 0.06 7.21 -7.12 -0.05 0.01 16 15 N -0.43 -6.98 5.78 -246.09 -1.42 -8.40 16 16 C 0.01 0.19 5.29 -4.98 -0.03 0.16 16 17 C 0.45 10.65 7.85 -10.98 -0.09 10.56 16 18 O -0.58 -15.84 16.01 5.54 0.09 -15.75 16 19 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 24 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C -0.01 -0.08 7.23 -7.12 -0.05 -0.13 16 29 C -0.12 -1.20 6.11 -25.49 -0.16 -1.36 16 30 H 0.06 0.25 6.57 -51.93 -0.34 -0.10 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.57 7.95 -51.93 -0.41 0.15 16 35 H 0.07 0.28 6.56 -51.93 -0.34 -0.06 16 36 H 0.06 0.27 7.56 -51.92 -0.39 -0.12 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.40 2.48 8.04 -40.82 -0.33 2.15 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.94 7.91 -51.93 -0.41 0.53 16 42 H 0.08 0.88 7.91 -51.93 -0.41 0.47 16 43 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 44 H 0.06 0.98 7.30 -51.93 -0.38 0.60 16 45 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 47 H 0.08 1.10 7.42 -51.93 -0.39 0.72 16 48 H 0.09 1.41 7.91 -51.93 -0.41 1.00 16 49 H 0.10 1.05 7.79 -51.93 -0.40 0.64 16 50 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -33.83 404.12 -8.87 -42.70 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.22 Total: 9.65 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.48 Total: 5.36 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -1.02 Total: -52.72 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.22 Total: -27.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.83 -8.87 -42.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484793319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.744 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds