Wall clock time and date at job start Tue Mar 31 2020 23:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46994 * 2 1 4 4 H 1.09001 * 109.46704 * 55.00793 * 3 2 1 5 5 C 1.52995 * 109.47068 * 294.99961 * 3 2 1 6 6 C 1.50701 * 109.46601 * 174.99871 * 3 2 1 7 7 O 1.21278 * 120.00553 * 0.02562 * 6 3 2 8 8 N 1.34782 * 119.99745 * 179.97438 * 6 3 2 9 9 C 1.46495 * 119.99823 * 180.02562 * 8 6 3 10 10 H 1.08996 * 110.77668 * 328.53762 * 9 8 6 11 11 C 1.55061 * 111.05002 * 92.19414 * 9 8 6 12 12 O 1.44599 * 103.67122 * 81.70926 * 11 9 8 13 13 C 1.42848 * 106.73735 * 39.10088 * 12 11 9 14 14 C 1.52679 * 115.92062 * 202.58532 * 13 12 11 15 15 N 1.47638 * 87.72790 * 218.38635 * 14 13 12 16 16 C 1.46903 * 111.00078 * 138.08051 * 15 14 13 17 17 C 1.50694 * 109.47066 * 169.99880 * 16 15 14 18 18 O 1.21297 * 120.00199 * 359.97438 * 17 16 15 19 19 N 1.34784 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99735 * 179.72439 * 19 17 16 21 21 H 1.07998 * 120.00618 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99464 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00058 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99669 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47200 * 60.00190 * 24 22 20 26 26 H 1.48498 * 109.46669 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47156 * 300.00205 * 24 22 20 28 28 C 1.47631 * 88.01378 * 26.31493 * 15 14 13 29 29 C 1.53331 * 108.31385 * 334.30193 * 13 12 11 30 30 H 1.09001 * 109.47711 * 59.99978 * 1 2 3 31 31 H 1.09006 * 109.47730 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47218 * 299.99588 * 1 2 3 33 33 H 1.09000 * 109.46940 * 239.99939 * 2 1 3 34 34 H 1.08996 * 109.47210 * 120.00540 * 2 1 3 35 35 H 1.08996 * 109.47130 * 60.00758 * 5 3 2 36 36 H 1.09009 * 109.46582 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47604 * 299.99767 * 5 3 2 38 38 H 0.96999 * 119.99927 * 0.02562 * 8 6 3 39 39 H 1.08997 * 110.58771 * 200.25982 * 11 9 8 40 40 H 1.09006 * 110.58211 * 323.01521 * 11 9 8 41 41 H 1.08991 * 113.51378 * 103.67346 * 14 13 12 42 42 H 1.08996 * 113.56565 * 333.10492 * 14 13 12 43 43 H 1.08998 * 109.46809 * 49.99981 * 16 15 14 44 44 H 1.09002 * 109.47056 * 289.99722 * 16 15 14 45 45 H 0.97000 * 119.99339 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99610 * 179.97438 * 23 22 20 47 47 H 1.09003 * 113.50650 * 88.39529 * 28 15 14 48 48 H 1.08998 * 113.51040 * 218.96802 * 28 15 14 49 49 H 1.09006 * 110.56431 * 120.19537 * 29 13 12 50 50 H 1.09002 * 110.56410 * 243.03689 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5418 1.4442 0.1239 7 8 4.1450 0.3951 0.2038 8 7 4.2149 2.6117 0.1448 9 6 5.6750 2.6134 0.2647 10 1 6.0157 1.7605 0.8516 11 6 6.3484 2.6271 -1.1320 12 8 6.3118 4.0208 -1.5155 13 6 6.5891 4.7791 -0.3371 14 6 6.0956 6.2240 -0.3417 15 7 7.3425 6.5902 0.3589 16 6 7.9038 7.8356 -0.1815 17 6 9.0258 8.3078 0.7067 18 8 9.3279 7.6700 1.6933 19 7 9.6930 9.4396 0.4056 20 6 10.7100 9.8722 1.2168 21 1 10.9769 9.3061 2.0969 22 6 11.3981 11.0387 0.9059 23 7 11.0737 11.7273 -0.1652 24 14 12.7844 11.6279 2.0108 25 1 13.8452 10.5905 2.0699 26 1 13.3520 12.8865 1.4642 27 1 12.2574 11.8754 3.3769 28 6 7.9772 5.4106 -0.2619 29 6 6.1770 3.9442 0.8812 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3635 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5489 2.1253 -1.3968 36 1 1.9989 3.1541 -1.3074 37 1 2.0698 1.5876 -2.1491 38 1 3.7326 3.4508 0.0806 39 1 7.3778 2.2750 -1.0646 40 1 5.7817 2.0183 -1.8366 41 1 5.1986 6.3790 0.2576 42 1 6.0156 6.6539 -1.3401 43 1 7.1257 8.5979 -0.2203 44 1 8.2868 7.6556 -1.1860 45 1 9.4506 9.9502 -0.3827 46 1 11.5539 12.5418 -0.3820 47 1 8.4148 5.6161 -1.2388 48 1 8.6595 4.8829 0.4044 49 1 7.0340 3.7660 1.5308 50 1 5.3754 4.4381 1.4304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484793319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:16 Heat of formation + Delta-G solvation = -112.311749 kcal Electronic energy + Delta-G solvation = -29566.290283 eV Core-core repulsion = 25400.343389 eV Total energy + Delta-G solvation = -4165.946894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26088 -40.94943 -39.94777 -38.52705 -36.37085 -35.92773 -35.55918 -33.31122 -32.34227 -31.42453 -30.06955 -28.22209 -27.17031 -26.56273 -26.20012 -24.14895 -23.55678 -22.02973 -21.07785 -20.79785 -20.32462 -19.90460 -18.29600 -18.05285 -17.72705 -17.10325 -16.86564 -16.63536 -16.45423 -16.38800 -15.98949 -15.71380 -15.35741 -15.17316 -15.09157 -14.64149 -14.41823 -14.26786 -13.98607 -13.77603 -13.57874 -13.44535 -13.28941 -12.96682 -12.90754 -12.76376 -12.65045 -12.53819 -12.48692 -12.43636 -12.30735 -12.25762 -12.12830 -11.74728 -11.67670 -11.57217 -11.49220 -10.78929 -10.71860 -10.40293 -10.03247 -10.01191 -9.83739 -8.46502 -5.95322 1.39565 1.41267 1.52217 1.60634 2.05642 2.12668 2.27650 2.54891 2.94681 3.18341 3.22477 3.35573 3.48459 3.61512 3.71859 3.88615 3.91146 4.00990 4.01859 4.13842 4.29975 4.33030 4.41602 4.44438 4.51592 4.54187 4.58481 4.63410 4.63586 4.69683 4.74006 4.76358 4.78904 4.88177 4.93773 4.99896 5.05430 5.14634 5.23251 5.26832 5.38262 5.40481 5.44242 5.52440 5.80882 5.88771 6.05016 6.52840 6.60702 7.13013 7.22724 7.56462 8.12894 8.70670 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035211 B = 0.001755 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.019524 B =15951.778124 C =16088.644184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.105 4.105 4 H 0.119 0.881 5 C -0.143 4.143 6 C 0.514 3.486 7 O -0.584 6.584 8 N -0.706 5.706 9 C 0.116 3.884 10 H 0.101 0.899 11 C 0.037 3.963 12 O -0.362 6.362 13 C 0.087 3.913 14 C 0.013 3.987 15 N -0.459 5.459 16 C 0.024 3.976 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.575 5.575 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 C -0.016 4.016 29 C -0.117 4.117 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.415 0.585 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.079 0.921 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.273 -17.586 -5.009 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.126 4.126 4 H 0.137 0.863 5 C -0.200 4.200 6 C 0.303 3.697 7 O -0.463 6.463 8 N -0.357 5.357 9 C 0.010 3.990 10 H 0.119 0.881 11 C -0.040 4.040 12 O -0.280 6.280 13 C 0.046 3.954 14 C -0.115 4.115 15 N -0.183 5.183 16 C -0.108 4.108 17 C 0.230 3.770 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.145 4.145 29 C -0.155 4.155 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.252 0.748 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.097 0.903 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.111 0.889 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.585 -18.353 -3.872 28.596 hybrid contribution 1.103 0.957 -0.697 1.618 sum -20.482 -17.396 -4.570 27.258 Atomic orbital electron populations 1.21817 0.93681 1.02328 1.02831 1.21317 0.96843 0.94263 1.01927 1.21403 0.89283 0.99596 1.02365 0.86341 1.21839 1.03479 1.00432 0.94269 1.21337 0.91307 0.82933 0.74146 1.90687 1.71449 1.32931 1.51280 1.45901 1.06387 1.09402 1.74058 1.22390 0.81232 0.98977 0.96416 0.88096 1.24069 1.00921 0.82905 0.96148 1.88799 1.91174 1.17234 1.30781 1.22851 0.94345 0.92053 0.86156 1.24126 0.95557 0.92130 0.99726 1.68735 1.04427 1.00008 1.45116 1.22365 0.96828 0.95481 0.96092 1.20742 0.85969 0.82361 0.87977 1.90485 1.70308 1.58201 1.31351 1.41935 1.31248 1.22319 1.25796 1.19623 1.11486 1.07827 1.07547 0.90430 1.26023 1.01020 0.95802 0.98335 1.69662 1.42869 1.17315 1.26241 0.84997 0.77642 0.77701 0.78037 1.19824 1.19404 1.19708 1.24455 0.98047 0.93289 0.98704 1.22758 1.03300 0.93238 0.96247 0.91323 0.92467 0.91808 0.92820 0.92922 0.89439 0.90984 0.93191 0.74781 0.90635 0.88652 0.86775 0.89407 0.86891 0.90315 0.77032 0.91303 0.90797 0.90781 0.88936 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 71.98 0.70 -0.50 16 2 C -0.11 -1.36 4.75 30.59 0.15 -1.21 16 3 C -0.11 -1.13 2.72 -11.54 -0.03 -1.16 16 4 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 5 C -0.14 -1.08 8.84 71.98 0.64 -0.44 16 6 C 0.51 8.90 7.15 87.66 0.63 9.52 16 7 O -0.58 -15.15 15.56 -3.02 -0.05 -15.20 16 8 N -0.71 -9.93 5.05 -435.94 -2.20 -12.13 16 9 C 0.12 1.99 3.51 46.39 0.16 2.15 16 10 H 0.10 1.97 7.54 -2.39 -0.02 1.95 16 11 C 0.04 0.70 7.42 72.69 0.54 1.24 16 12 O -0.36 -7.81 11.32 -148.98 -1.69 -9.49 16 13 C 0.09 1.86 1.65 -10.89 -0.02 1.84 16 14 C 0.01 0.27 7.21 83.76 0.60 0.88 16 15 N -0.46 -14.24 5.78 -933.44 -5.39 -19.63 16 16 C 0.02 0.82 5.29 85.55 0.45 1.28 16 17 C 0.44 21.31 7.85 87.65 0.69 22.00 16 18 O -0.62 -34.89 16.01 -3.08 -0.05 -34.94 16 19 N -0.58 -29.78 5.29 -306.97 -1.62 -31.40 16 20 C -0.34 -19.23 9.68 84.04 0.81 -18.41 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 24 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 C -0.02 -0.45 7.23 83.77 0.61 0.16 16 29 C -0.12 -2.13 6.11 31.40 0.19 -1.94 16 30 H 0.07 0.41 6.57 -2.39 -0.02 0.40 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.86 7.95 -2.39 -0.02 0.84 16 35 H 0.09 0.40 6.56 -2.39 -0.02 0.39 16 36 H 0.07 0.41 7.56 -2.38 -0.02 0.39 16 37 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.41 3.90 8.04 -92.71 -0.75 3.16 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.11 1.93 7.91 -2.39 -0.02 1.91 16 42 H 0.09 1.72 7.91 -2.39 -0.02 1.70 16 43 H 0.11 3.31 8.08 -2.39 -0.02 3.29 16 44 H 0.08 2.41 7.30 -2.39 -0.02 2.39 16 45 H 0.40 19.37 7.90 -92.71 -0.73 18.63 16 46 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 47 H 0.07 2.11 7.42 -2.39 -0.02 2.09 16 48 H 0.07 2.34 7.91 -2.39 -0.02 2.32 16 49 H 0.09 1.89 7.79 -2.38 -0.02 1.87 16 50 H 0.11 1.64 7.69 -2.39 -0.02 1.63 16 Total: -1.00 -74.51 404.12 -2.62 -77.14 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: -0.52 Total: 34.73 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.58 Total: 15.21 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -8.93 Total: -112.60 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -1.78 Total: -59.63 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.51 -2.62 -77.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484793319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.176 kcal (2) G-P(sol) polarization free energy of solvation -74.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds