Wall clock time and date at job start Tue Mar 31 2020 23:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09004 * 109.47066 * 54.99931 * 3 2 1 5 5 C 1.53000 * 109.47166 * 294.99927 * 3 2 1 6 6 C 1.50702 * 109.47159 * 174.99728 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 H 1.09005 * 110.73313 * 36.96671 * 9 8 6 11 11 C 1.54460 * 110.82875 * 273.55247 * 9 8 6 12 12 O 1.43522 * 107.57756 * 220.40875 * 11 9 8 13 13 C 1.42553 * 109.63800 * 359.35798 * 12 11 9 14 14 C 1.52948 * 116.15274 * 253.35715 * 13 12 11 15 15 N 1.48141 * 85.87076 * 218.82336 * 14 13 12 16 16 C 1.46901 * 111.00272 * 136.93922 * 15 14 13 17 17 C 1.50697 * 109.47125 * 90.43872 * 16 15 14 18 18 O 1.21288 * 120.00518 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99763 * 180.02562 * 17 16 15 20 20 C 1.37093 * 119.99941 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99997 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00299 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00329 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99611 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47232 * 89.99752 * 24 22 20 26 26 H 1.48505 * 109.47273 * 209.99578 * 24 22 20 27 27 H 1.48503 * 109.47272 * 329.99911 * 24 22 20 28 28 C 1.48153 * 90.93410 * 23.97121 * 15 14 13 29 29 C 1.54005 * 106.47875 * 23.04859 * 13 12 11 30 30 H 1.09001 * 109.47091 * 60.00619 * 1 2 3 31 31 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47103 * 299.99907 * 1 2 3 33 33 H 1.09005 * 109.47761 * 239.99871 * 2 1 3 34 34 H 1.09000 * 109.47436 * 120.00075 * 2 1 3 35 35 H 1.08994 * 109.47175 * 59.99981 * 5 3 2 36 36 H 1.09001 * 109.46739 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.46783 * 299.99412 * 5 3 2 38 38 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 39 39 H 1.08999 * 109.83359 * 339.91493 * 11 9 8 40 40 H 1.08994 * 109.83621 * 100.80941 * 11 9 8 41 41 H 1.08999 * 113.80376 * 333.06360 * 14 13 12 42 42 H 1.09003 * 113.80266 * 104.58064 * 14 13 12 43 43 H 1.08999 * 109.47228 * 210.44391 * 16 15 14 44 44 H 1.09005 * 109.46545 * 330.44069 * 16 15 14 45 45 H 0.96999 * 120.00393 * 0.02562 * 19 17 16 46 46 H 0.97000 * 120.00145 * 180.02562 * 23 22 20 47 47 H 1.09004 * 113.80791 * 221.78995 * 28 15 14 48 48 H 1.08999 * 113.91642 * 90.28128 * 28 15 14 49 49 H 1.09006 * 111.15386 * 206.95473 * 29 13 12 50 50 H 1.08991 * 111.16419 * 82.71191 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1451 0.3951 0.2038 8 7 4.2153 2.6116 0.1398 9 6 5.6758 2.6132 0.2541 10 1 6.1073 1.7802 -0.3009 11 6 6.1108 2.5698 1.7356 12 8 7.2294 3.4565 1.8851 13 6 7.5471 4.0435 0.6255 14 6 8.8138 3.5270 -0.0586 15 7 9.0411 4.9343 -0.4617 16 6 10.4502 5.3110 -0.2867 17 6 11.2082 5.0249 -1.5573 18 8 10.6314 4.5540 -2.5147 19 7 12.5272 5.2923 -1.6299 20 6 13.2167 5.0325 -2.7860 21 1 12.7028 4.6139 -3.6388 22 6 14.5764 5.3087 -2.8611 23 7 15.2372 5.0601 -3.9694 24 14 15.4650 6.0333 -1.3864 25 1 15.9879 4.9350 -0.5347 26 1 16.5938 6.8773 -1.8542 27 1 14.5196 6.8639 -0.5978 28 6 8.2177 5.4172 0.6713 29 6 6.2665 3.9687 -0.2268 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5490 2.1252 -1.3969 36 1 1.9982 3.1543 -1.3071 37 1 2.0699 1.5875 -2.1491 38 1 3.7330 3.4508 0.0756 39 1 5.2897 2.8999 2.3719 40 1 6.4029 1.5551 2.0057 41 1 9.5618 3.1413 0.6340 42 1 8.6195 2.8556 -0.8950 43 1 10.5161 6.3743 -0.0559 44 1 10.8815 4.7342 0.5315 45 1 12.9887 5.6686 -0.8642 46 1 16.1864 5.2526 -4.0216 47 1 7.5522 6.2407 0.4121 48 1 8.7853 5.5996 1.5839 49 1 6.5031 3.9394 -1.2905 50 1 5.5929 4.7945 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484793320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:21 Heat of formation + Delta-G solvation = -79.729965 kcal Electronic energy + Delta-G solvation = -29499.423819 eV Core-core repulsion = 25334.889778 eV Total energy + Delta-G solvation = -4164.534042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.22786 -40.16427 -38.47386 -37.28839 -35.85498 -34.99051 -33.91453 -31.71243 -31.43171 -30.50556 -29.37870 -27.12221 -26.28935 -25.76969 -24.77933 -22.98771 -22.65350 -21.34659 -20.27291 -19.40026 -19.32959 -18.36298 -17.60742 -17.09678 -16.49449 -16.07493 -15.83648 -15.78547 -15.42286 -15.00458 -14.83692 -14.57650 -14.27145 -14.01913 -13.93423 -13.70199 -13.36293 -13.24517 -13.13408 -12.86935 -12.59419 -12.51437 -12.25858 -12.19923 -12.11217 -12.03522 -11.95630 -11.84750 -11.38466 -11.26887 -11.20972 -11.11117 -11.05985 -10.69320 -10.58121 -10.06528 -9.95517 -9.64896 -9.54135 -9.45707 -8.89328 -8.31863 -8.15297 -6.28825 -3.80091 2.27139 2.67661 3.03815 3.08047 3.16157 3.46732 3.76144 3.82979 4.07651 4.12092 4.20400 4.29380 4.40451 4.43203 4.47457 4.69997 4.74783 4.81601 4.85011 4.92963 5.04524 5.10502 5.10931 5.18812 5.31571 5.34958 5.36506 5.41872 5.47989 5.51274 5.53196 5.55813 5.58634 5.60776 5.67352 5.70017 5.80966 5.81706 5.92813 5.94012 5.98915 6.09076 6.40418 6.82874 6.99093 7.08393 7.60340 7.85075 8.16608 8.62913 8.97898 9.44998 9.86725 10.84440 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025805 B = 0.001865 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.819103 B =15009.477538 C =15487.986404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.110 4.110 4 H 0.097 0.903 5 C -0.147 4.147 6 C 0.516 3.484 7 O -0.534 6.534 8 N -0.720 5.720 9 C 0.112 3.888 10 H 0.107 0.893 11 C 0.042 3.958 12 O -0.362 6.362 13 C 0.079 3.921 14 C 0.001 3.999 15 N -0.443 5.443 16 C 0.009 3.991 17 C 0.456 3.544 18 O -0.557 6.557 19 N -0.594 5.594 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.011 3.989 29 C -0.128 4.128 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.402 0.598 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.105 0.895 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.901 -2.306 13.873 31.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.132 4.132 4 H 0.115 0.885 5 C -0.204 4.204 6 C 0.303 3.697 7 O -0.409 6.409 8 N -0.373 5.373 9 C 0.007 3.993 10 H 0.125 0.875 11 C -0.036 4.036 12 O -0.280 6.280 13 C 0.038 3.962 14 C -0.127 4.127 15 N -0.167 5.167 16 C -0.123 4.123 17 C 0.241 3.759 18 O -0.438 6.438 19 N -0.234 5.234 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.118 4.118 29 C -0.166 4.166 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.238 0.762 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.202 0.798 46 H 0.083 0.917 47 H 0.115 0.885 48 H 0.097 0.903 49 H 0.123 0.877 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.669 -3.146 12.670 30.594 hybrid contribution 1.034 0.828 1.775 2.215 sum -26.634 -2.318 14.445 30.388 Atomic orbital electron populations 1.21845 0.95383 1.02029 1.01859 1.21355 0.95427 0.94023 1.03654 1.21371 0.91414 0.99695 1.00697 0.88467 1.21846 1.02531 1.00226 0.95844 1.20811 0.90157 0.83462 0.75274 1.90730 1.70272 1.31330 1.48619 1.45954 1.06733 1.09101 1.75486 1.22582 0.80595 0.99783 0.96346 0.87512 1.23581 0.89303 0.94718 0.95992 1.88354 1.49492 1.60461 1.29695 1.23440 0.94357 0.94606 0.83772 1.24423 0.95898 0.93272 0.99144 1.68382 1.07091 1.05103 1.36084 1.22505 0.90230 1.02072 0.97493 1.19556 0.82338 0.84636 0.89374 1.90559 1.67847 1.47139 1.38224 1.42216 1.07993 1.58470 1.14698 1.19424 0.91688 1.39959 0.92173 0.86317 1.25027 0.96248 0.97840 0.97064 1.69620 1.09398 1.47580 1.25679 0.86676 0.80347 0.79703 0.82674 1.19680 1.20191 1.19525 1.24153 0.96758 0.96198 0.94663 1.23083 0.95348 0.95904 1.02239 0.92380 0.92385 0.92721 0.91182 0.91094 0.91026 0.92107 0.91829 0.76248 0.91117 0.90560 0.90324 0.88404 0.89119 0.92086 0.79783 0.91657 0.88463 0.90297 0.87676 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.67 37.16 0.36 -0.37 16 2 C -0.11 -0.72 4.75 -26.73 -0.13 -0.84 16 3 C -0.11 -0.65 2.73 -91.77 -0.25 -0.90 16 4 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 5 C -0.15 -0.67 8.84 37.16 0.33 -0.34 16 6 C 0.52 4.67 7.16 -10.98 -0.08 4.59 16 7 O -0.53 -7.10 15.65 5.55 0.09 -7.01 16 8 N -0.72 -5.31 5.03 -51.79 -0.26 -5.57 16 9 C 0.11 1.07 3.29 -65.85 -0.22 0.85 16 10 H 0.11 1.23 7.71 -51.93 -0.40 0.83 16 11 C 0.04 0.43 7.57 37.92 0.29 0.72 16 12 O -0.36 -4.38 11.17 -35.23 -0.39 -4.78 16 13 C 0.08 0.92 1.47 -90.27 -0.13 0.79 16 14 C 0.00 0.02 7.45 -3.17 -0.02 0.00 16 15 N -0.44 -6.94 5.63 -245.00 -1.38 -8.32 16 16 C 0.01 0.15 5.28 -4.98 -0.03 0.13 16 17 C 0.46 10.51 7.82 -10.99 -0.09 10.42 16 18 O -0.56 -15.20 16.01 5.55 0.09 -15.12 16 19 N -0.59 -14.33 5.09 -10.96 -0.06 -14.38 16 20 C -0.30 -8.69 10.16 -14.94 -0.15 -8.85 16 21 H 0.12 3.88 7.39 -52.48 -0.39 3.50 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 24 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 28 C 0.01 0.13 7.51 -3.17 -0.02 0.11 16 29 C -0.13 -1.21 6.02 -24.89 -0.15 -1.36 16 30 H 0.06 0.24 6.57 -51.93 -0.34 -0.11 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.56 7.96 -51.93 -0.41 0.15 16 35 H 0.07 0.25 6.56 -51.93 -0.34 -0.09 16 36 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 1.85 7.91 -40.82 -0.32 1.52 16 39 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.13 7.48 -51.93 -0.39 0.74 16 42 H 0.10 1.52 8.11 -51.93 -0.42 1.09 16 43 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 44 H 0.06 0.91 7.38 -51.93 -0.38 0.52 16 45 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 48 H 0.08 0.87 7.93 -51.93 -0.41 0.45 16 49 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 50 H 0.09 0.64 7.98 -51.93 -0.41 0.22 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -35.66 401.92 -8.42 -44.07 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.23 Total: 9.47 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.39 Total: 5.98 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.92 Total: -53.51 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.22 Total: -26.91 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.66 -8.42 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484793320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.658 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds