Wall clock time and date at job start Tue Mar 31 2020 23:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09004 * 109.47066 * 54.99931 * 3 2 1 5 5 C 1.53000 * 109.47166 * 294.99927 * 3 2 1 6 6 C 1.50702 * 109.47159 * 174.99728 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 H 1.09005 * 110.73313 * 36.96671 * 9 8 6 11 11 C 1.54460 * 110.82875 * 273.55247 * 9 8 6 12 12 O 1.43522 * 107.57756 * 220.40875 * 11 9 8 13 13 C 1.42553 * 109.63800 * 359.35798 * 12 11 9 14 14 C 1.52948 * 116.15274 * 253.35715 * 13 12 11 15 15 N 1.48141 * 85.87076 * 218.82336 * 14 13 12 16 16 C 1.46901 * 111.00272 * 136.93922 * 15 14 13 17 17 C 1.50697 * 109.47125 * 90.43872 * 16 15 14 18 18 O 1.21288 * 120.00518 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99763 * 180.02562 * 17 16 15 20 20 C 1.37093 * 119.99941 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99997 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00299 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00329 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99611 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47232 * 89.99752 * 24 22 20 26 26 H 1.48505 * 109.47273 * 209.99578 * 24 22 20 27 27 H 1.48503 * 109.47272 * 329.99911 * 24 22 20 28 28 C 1.48153 * 90.93410 * 23.97121 * 15 14 13 29 29 C 1.54005 * 106.47875 * 23.04859 * 13 12 11 30 30 H 1.09001 * 109.47091 * 60.00619 * 1 2 3 31 31 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47103 * 299.99907 * 1 2 3 33 33 H 1.09005 * 109.47761 * 239.99871 * 2 1 3 34 34 H 1.09000 * 109.47436 * 120.00075 * 2 1 3 35 35 H 1.08994 * 109.47175 * 59.99981 * 5 3 2 36 36 H 1.09001 * 109.46739 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.46783 * 299.99412 * 5 3 2 38 38 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 39 39 H 1.08999 * 109.83359 * 339.91493 * 11 9 8 40 40 H 1.08994 * 109.83621 * 100.80941 * 11 9 8 41 41 H 1.08999 * 113.80376 * 333.06360 * 14 13 12 42 42 H 1.09003 * 113.80266 * 104.58064 * 14 13 12 43 43 H 1.08999 * 109.47228 * 210.44391 * 16 15 14 44 44 H 1.09005 * 109.46545 * 330.44069 * 16 15 14 45 45 H 0.96999 * 120.00393 * 0.02562 * 19 17 16 46 46 H 0.97000 * 120.00145 * 180.02562 * 23 22 20 47 47 H 1.09004 * 113.80791 * 221.78995 * 28 15 14 48 48 H 1.08999 * 113.91642 * 90.28128 * 28 15 14 49 49 H 1.09006 * 111.15386 * 206.95473 * 29 13 12 50 50 H 1.08991 * 111.16419 * 82.71191 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1451 0.3951 0.2038 8 7 4.2153 2.6116 0.1398 9 6 5.6758 2.6132 0.2541 10 1 6.1073 1.7802 -0.3009 11 6 6.1108 2.5698 1.7356 12 8 7.2294 3.4565 1.8851 13 6 7.5471 4.0435 0.6255 14 6 8.8138 3.5270 -0.0586 15 7 9.0411 4.9343 -0.4617 16 6 10.4502 5.3110 -0.2867 17 6 11.2082 5.0249 -1.5573 18 8 10.6314 4.5540 -2.5147 19 7 12.5272 5.2923 -1.6299 20 6 13.2167 5.0325 -2.7860 21 1 12.7028 4.6139 -3.6388 22 6 14.5764 5.3087 -2.8611 23 7 15.2372 5.0601 -3.9694 24 14 15.4650 6.0333 -1.3864 25 1 15.9879 4.9350 -0.5347 26 1 16.5938 6.8773 -1.8542 27 1 14.5196 6.8639 -0.5978 28 6 8.2177 5.4172 0.6713 29 6 6.2665 3.9687 -0.2268 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5490 2.1252 -1.3969 36 1 1.9982 3.1543 -1.3071 37 1 2.0699 1.5875 -2.1491 38 1 3.7330 3.4508 0.0756 39 1 5.2897 2.8999 2.3719 40 1 6.4029 1.5551 2.0057 41 1 9.5618 3.1413 0.6340 42 1 8.6195 2.8556 -0.8950 43 1 10.5161 6.3743 -0.0559 44 1 10.8815 4.7342 0.5315 45 1 12.9887 5.6686 -0.8642 46 1 16.1864 5.2526 -4.0216 47 1 7.5522 6.2407 0.4121 48 1 8.7853 5.5996 1.5839 49 1 6.5031 3.9394 -1.2905 50 1 5.5929 4.7945 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484793320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:20 Heat of formation + Delta-G solvation = -109.854557 kcal Electronic energy + Delta-G solvation = -29500.730120 eV Core-core repulsion = 25334.889778 eV Total energy + Delta-G solvation = -4165.840342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.17771 -40.99267 -40.09556 -38.49707 -36.41718 -35.97843 -35.79983 -33.76929 -32.38382 -31.43797 -30.03827 -28.33393 -27.33245 -26.49315 -26.23656 -23.98367 -23.61074 -22.12422 -21.26983 -20.89253 -20.34720 -20.22449 -18.32059 -17.98205 -17.73475 -17.49432 -16.85288 -16.71260 -16.47390 -16.37336 -15.96873 -15.53823 -15.30185 -15.18457 -14.93029 -14.64825 -14.61880 -14.40495 -14.27974 -14.04892 -13.88737 -13.57655 -13.28721 -13.03568 -12.94872 -12.92230 -12.81819 -12.55282 -12.50359 -12.47974 -12.41931 -12.04609 -11.97570 -11.73739 -11.67055 -11.58791 -11.51076 -10.81150 -10.58364 -10.47861 -10.24972 -10.21633 -9.79176 -8.41729 -6.02678 1.29349 1.35027 1.43927 1.56129 1.96003 1.99494 2.22508 2.46322 2.75705 3.08298 3.14248 3.28358 3.44675 3.59666 3.68052 3.85728 3.88785 3.97180 3.98961 4.03085 4.14754 4.30157 4.37215 4.39927 4.44872 4.52700 4.56215 4.60929 4.62088 4.67575 4.73799 4.76274 4.84142 4.89130 4.94046 4.98235 5.03611 5.13656 5.21864 5.27748 5.34424 5.40319 5.50719 5.52322 5.84492 5.93285 5.97173 6.48088 6.59355 6.88131 7.19570 7.39576 7.97607 8.76084 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025805 B = 0.001865 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.819103 B =15009.477538 C =15487.986404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.102 4.102 4 H 0.126 0.874 5 C -0.145 4.145 6 C 0.511 3.489 7 O -0.585 6.585 8 N -0.704 5.704 9 C 0.118 3.882 10 H 0.077 0.923 11 C 0.044 3.956 12 O -0.370 6.370 13 C 0.087 3.913 14 C -0.011 4.011 15 N -0.472 5.472 16 C 0.021 3.979 17 C 0.452 3.548 18 O -0.609 6.609 19 N -0.593 5.593 20 C -0.329 4.329 21 H 0.053 0.947 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.230 1.230 28 C 0.023 3.977 29 C -0.118 4.118 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.420 0.580 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.122 0.878 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.590 0.647 17.522 34.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.123 4.123 4 H 0.143 0.857 5 C -0.202 4.202 6 C 0.300 3.700 7 O -0.464 6.464 8 N -0.358 5.358 9 C 0.011 3.989 10 H 0.095 0.905 11 C -0.034 4.034 12 O -0.288 6.288 13 C 0.046 3.954 14 C -0.140 4.140 15 N -0.196 5.196 16 C -0.110 4.110 17 C 0.240 3.760 18 O -0.493 6.493 19 N -0.235 5.235 20 C -0.458 4.458 21 H 0.071 0.929 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.153 1.153 28 C -0.105 4.105 29 C -0.156 4.156 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.259 0.741 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.143 0.857 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.088 0.912 47 H 0.140 0.860 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -29.403 -0.152 16.340 33.638 hybrid contribution 1.494 -0.203 0.529 1.598 sum -27.908 -0.355 16.868 32.612 Atomic orbital electron populations 1.21810 0.93445 1.02333 1.02961 1.21339 0.97037 0.94443 1.01801 1.21405 0.88776 0.99545 1.02606 0.85653 1.21867 1.03621 1.00601 0.94133 1.21484 0.91538 0.82937 0.74065 1.90714 1.71485 1.33207 1.50986 1.45800 1.05779 1.09669 1.74528 1.22319 0.81801 0.99016 0.95728 0.90496 1.23603 0.89358 0.93946 0.96492 1.88339 1.50151 1.60631 1.29631 1.23313 0.93973 0.94293 0.83808 1.24455 0.98053 0.92815 0.98665 1.68315 1.06753 1.05730 1.38762 1.22446 0.90238 1.04526 0.93813 1.20881 0.81989 0.82155 0.90978 1.90536 1.68926 1.48849 1.40953 1.42043 1.08491 1.59126 1.13885 1.18997 0.92635 1.41698 0.92491 0.92861 1.26122 0.96517 0.97516 1.01242 1.69806 1.10153 1.48716 1.28916 0.85358 0.78983 0.79351 0.77774 1.18320 1.19908 1.15296 1.24232 0.96085 0.96414 0.93759 1.23038 0.94943 0.96705 1.00917 0.91305 0.92608 0.91461 0.93254 0.92904 0.89245 0.90458 0.93611 0.74109 0.89129 0.91988 0.90464 0.91016 0.85736 0.89437 0.77514 0.91156 0.86042 0.88650 0.89212 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 71.98 0.70 -0.48 16 2 C -0.11 -1.44 4.75 30.59 0.15 -1.29 16 3 C -0.10 -1.04 2.73 -11.54 -0.03 -1.08 16 4 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 5 C -0.14 -1.01 8.84 71.98 0.64 -0.38 16 6 C 0.51 9.04 7.16 87.66 0.63 9.67 16 7 O -0.58 -16.35 15.65 -3.04 -0.05 -16.40 16 8 N -0.70 -9.33 5.03 -436.15 -2.19 -11.52 16 9 C 0.12 2.18 3.29 46.34 0.15 2.33 16 10 H 0.08 1.91 7.71 -2.38 -0.02 1.90 16 11 C 0.04 0.84 7.57 72.48 0.55 1.39 16 12 O -0.37 -8.19 11.17 -148.98 -1.66 -9.85 16 13 C 0.09 1.87 1.47 -10.45 -0.02 1.85 16 14 C -0.01 -0.31 7.45 86.05 0.64 0.33 16 15 N -0.47 -14.01 5.63 -934.39 -5.26 -19.27 16 16 C 0.02 0.67 5.28 85.56 0.45 1.12 16 17 C 0.45 20.97 7.82 87.66 0.69 21.65 16 18 O -0.61 -34.84 16.01 -3.05 -0.05 -34.89 16 19 N -0.59 -28.54 5.09 -306.99 -1.56 -30.10 16 20 C -0.33 -19.65 10.16 84.04 0.85 -18.80 16 21 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 22 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 23 N -0.94 -57.15 13.96 21.66 0.30 -56.85 16 24 Si 0.97 39.22 27.74 68.60 1.90 41.12 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 28 C 0.02 0.45 7.51 86.04 0.65 1.10 16 29 C -0.12 -2.03 6.02 31.79 0.19 -1.84 16 30 H 0.07 0.40 6.57 -2.39 -0.02 0.39 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.05 0.88 7.96 -2.39 -0.02 0.86 16 35 H 0.09 0.34 6.56 -2.39 -0.02 0.33 16 36 H 0.08 0.30 7.56 -2.39 -0.02 0.28 16 37 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.42 2.53 7.91 -92.71 -0.73 1.80 16 39 H 0.09 1.41 8.02 -2.39 -0.02 1.39 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 2.20 7.48 -2.39 -0.02 2.19 16 42 H 0.07 2.39 8.11 -2.39 -0.02 2.37 16 43 H 0.12 3.06 8.08 -2.39 -0.02 3.04 16 44 H 0.09 2.29 7.38 -2.38 -0.02 2.28 16 45 H 0.39 15.42 5.76 -92.71 -0.53 14.88 16 46 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 47 H 0.12 1.86 8.11 -2.39 -0.02 1.84 16 48 H 0.10 1.63 7.93 -2.39 -0.02 1.61 16 49 H 0.09 1.88 8.05 -2.38 -0.02 1.86 16 50 H 0.12 1.28 7.98 -2.39 -0.02 1.26 16 Total: -1.00 -86.19 401.92 -2.25 -88.44 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -0.37 Total: 34.14 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.70 Total: 15.19 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -8.72 Total: -117.74 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -1.76 Total: -61.15 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.90 Total: 41.12 kcal Total: -86.19 -2.25 -88.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484793320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.413 kcal (2) G-P(sol) polarization free energy of solvation -86.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds