Wall clock time and date at job start Tue Mar 31 2020 23:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50692 * 120.00293 * 2 1 4 4 C 1.33000 * 119.99620 * 179.97438 * 2 1 3 5 5 C 1.47101 * 119.99965 * 354.03060 * 4 2 1 6 6 O 1.21618 * 120.00162 * 353.54922 * 5 4 2 7 7 N 1.34769 * 120.00186 * 173.54520 * 5 4 2 8 8 C 1.46500 * 120.00545 * 175.25991 * 7 5 4 9 9 C 1.53004 * 109.51787 * 301.87656 * 8 7 5 10 10 O 1.42899 * 109.47411 * 302.74825 * 9 8 7 11 11 C 1.53120 * 109.52478 * 181.75272 * 8 7 5 12 12 C 1.53168 * 109.20504 * 297.68588 * 11 8 7 13 13 N 1.46851 * 109.55628 * 300.85729 * 12 11 8 14 14 C 1.46901 * 110.99803 * 185.84017 * 13 12 11 15 15 C 1.50704 * 109.46819 * 169.15527 * 14 13 12 16 16 O 1.21292 * 120.00029 * 354.19995 * 15 14 13 17 17 N 1.34772 * 119.99890 * 174.19665 * 15 14 13 18 18 C 1.37097 * 120.00323 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99607 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00565 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00510 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99724 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46963 * 89.99985 * 22 20 18 24 24 H 1.48505 * 109.46815 * 210.00080 * 22 20 18 25 25 H 1.48498 * 109.47183 * 329.99832 * 22 20 18 26 26 C 1.46845 * 111.19461 * 61.74798 * 13 12 11 27 27 C 1.53043 * 109.52541 * 298.25563 * 26 13 12 28 28 H 1.08998 * 109.47646 * 264.80593 * 1 2 3 29 29 H 1.09000 * 109.46698 * 24.80044 * 1 2 3 30 30 H 1.08998 * 109.47140 * 144.79741 * 1 2 3 31 31 H 1.09008 * 109.46817 * 269.99467 * 3 2 1 32 32 H 1.08998 * 109.47427 * 29.99356 * 3 2 1 33 33 H 1.08997 * 109.47305 * 149.99808 * 3 2 1 34 34 H 1.07993 * 119.99796 * 174.02929 * 4 2 1 35 35 H 0.97004 * 119.99990 * 354.98699 * 7 5 4 36 36 H 1.09001 * 109.47141 * 62.75164 * 9 8 7 37 37 H 1.09002 * 109.47170 * 182.74928 * 9 8 7 38 38 H 0.96699 * 114.00564 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.50406 * 57.68741 * 11 8 7 40 40 H 1.09007 * 109.50112 * 177.80486 * 11 8 7 41 41 H 1.09001 * 109.44490 * 180.83986 * 12 11 8 42 42 H 1.08999 * 109.44882 * 60.89131 * 12 11 8 43 43 H 1.09001 * 109.47392 * 289.15771 * 14 13 12 44 44 H 1.09003 * 109.47139 * 49.15554 * 14 13 12 45 45 H 0.97002 * 120.00224 * 359.97438 * 17 15 14 46 46 H 0.97001 * 120.00212 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.46556 * 178.24225 * 26 13 12 48 48 H 1.09001 * 109.46516 * 58.27208 * 26 13 12 49 49 H 1.08997 * 109.49913 * 299.24473 * 27 26 13 50 50 H 1.08991 * 109.50492 * 179.12068 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1519 0.0005 5 6 1.4423 -2.4222 0.1336 6 8 0.2475 -2.4164 0.3604 7 7 2.0978 -3.5926 0.0040 8 6 1.3946 -4.8561 0.2388 9 6 0.8244 -4.8676 1.6586 10 8 1.8824 -4.6700 2.5985 11 6 2.3703 -6.0240 0.0698 12 6 2.8900 -6.0419 -1.3709 13 7 1.7610 -6.1841 -2.2991 14 6 2.2326 -6.3439 -3.6811 15 6 1.0790 -6.7503 -4.5617 16 8 -0.0024 -6.9950 -4.0699 17 7 1.2490 -6.8416 -5.8955 18 6 0.1995 -7.2108 -6.6967 19 1 -0.7634 -7.4288 -6.2588 20 6 0.3746 -7.3045 -8.0718 21 7 -0.6312 -7.6588 -8.8397 22 14 2.0400 -6.9267 -8.8292 23 1 2.8490 -8.1703 -8.8915 24 1 1.8497 -6.3906 -10.2010 25 1 2.7449 -5.9187 -7.9973 26 6 0.8353 -5.0497 -2.1868 27 6 0.2537 -5.0022 -0.7720 28 1 -0.3634 -0.0930 1.0234 29 1 -0.3633 0.9329 -0.4311 30 1 -0.3633 -0.8397 -0.5924 31 1 2.4423 1.6196 -1.0278 32 1 1.6715 2.0647 0.5137 33 1 3.2129 1.1747 0.5138 34 1 3.2475 -1.1545 -0.0968 35 1 3.0344 -3.5986 -0.2486 36 1 0.0919 -4.0671 1.7624 37 1 0.3435 -5.8271 1.8493 38 1 1.5932 -4.6654 3.5212 39 1 3.2064 -5.9023 0.7584 40 1 1.8563 -6.9614 0.2826 41 1 3.5738 -6.8809 -1.4996 42 1 3.4159 -5.1099 -1.5786 43 1 2.6453 -5.3994 -4.0358 44 1 3.0042 -7.1130 -3.7151 45 1 2.1138 -6.6454 -6.2888 46 1 -0.5089 -7.7246 -9.7997 47 1 0.0266 -5.1681 -2.9079 48 1 1.3706 -4.1224 -2.3907 49 1 -0.2935 -5.9235 -0.5724 50 1 -0.4213 -4.1510 -0.6844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485012861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:49 Heat of formation + Delta-G solvation = -120.280814 kcal Electronic energy + Delta-G solvation = -30916.861885 eV Core-core repulsion = 26750.569427 eV Total energy + Delta-G solvation = -4166.292459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.77821 -40.44610 -39.30942 -37.63317 -36.38156 -35.99367 -35.37838 -33.75730 -32.96244 -31.87951 -29.83585 -28.68386 -28.47864 -27.34949 -25.48051 -24.31926 -23.29890 -22.24873 -21.25668 -20.25729 -20.13050 -19.67236 -18.21784 -17.93144 -17.74382 -16.92665 -16.75800 -16.61224 -16.22856 -16.16952 -15.53753 -15.50854 -15.34142 -15.04937 -14.96003 -14.80831 -14.54196 -14.46623 -14.04682 -14.00375 -13.88717 -13.49533 -13.34175 -13.21069 -13.09391 -12.93056 -12.73965 -12.57136 -12.46358 -12.40456 -12.34993 -12.17490 -11.99199 -11.76587 -11.45517 -11.38730 -11.02001 -10.40346 -10.26564 -10.22693 -10.10152 -9.76819 -9.16399 -8.40861 -6.01565 0.46933 1.29451 1.35576 1.44139 1.97803 2.23162 2.29619 2.38696 2.63197 3.14756 3.20621 3.22008 3.66128 3.77107 3.89371 3.95547 4.06204 4.15047 4.24151 4.28273 4.38278 4.40757 4.46654 4.49946 4.53085 4.58539 4.59531 4.68702 4.73109 4.78601 4.85985 4.91170 4.91645 4.97337 5.02448 5.08608 5.16088 5.22273 5.24790 5.53618 5.56033 5.66651 5.68757 5.90825 6.03010 6.23805 6.61073 6.72208 6.84149 6.89679 7.40007 7.41148 7.99479 8.77123 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012771 B = 0.002836 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.899360 B = 9871.191436 C =11015.503461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.033 4.033 3 C -0.123 4.123 4 C -0.247 4.247 5 C 0.540 3.460 6 O -0.572 6.572 7 N -0.701 5.701 8 C 0.189 3.811 9 C 0.073 3.927 10 O -0.573 6.573 11 C -0.104 4.104 12 C 0.054 3.946 13 N -0.533 5.533 14 C 0.055 3.945 15 C 0.450 3.550 16 O -0.605 6.605 17 N -0.593 5.593 18 C -0.326 4.326 19 H 0.053 0.947 20 C -0.017 4.017 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.232 1.232 26 C 0.074 3.926 27 C -0.115 4.115 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.408 0.592 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.393 0.607 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.127 0.873 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.046 0.954 48 H 0.030 0.970 49 H 0.065 0.935 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.451 14.963 21.805 31.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.035 4.035 3 C -0.180 4.180 4 C -0.268 4.268 5 C 0.332 3.668 6 O -0.454 6.454 7 N -0.352 5.352 8 C 0.102 3.898 9 C -0.006 4.006 10 O -0.380 6.380 11 C -0.142 4.142 12 C -0.073 4.073 13 N -0.259 5.259 14 C -0.076 4.076 15 C 0.238 3.762 16 O -0.489 6.489 17 N -0.236 5.236 18 C -0.456 4.456 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.155 1.155 26 C -0.054 4.054 27 C -0.154 4.154 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.166 0.834 35 H 0.245 0.755 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.241 0.759 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.144 0.856 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.048 0.952 49 H 0.083 0.917 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.921 14.328 21.719 29.994 hybrid contribution 0.238 0.405 -0.901 1.016 sum 15.159 14.733 20.818 29.669 Atomic orbital electron populations 1.21099 0.92170 1.02249 1.02605 1.22829 0.96342 0.95819 0.88478 1.21046 1.00308 0.92824 1.03798 1.22509 1.01204 0.91095 1.11997 1.18950 0.86729 0.85139 0.75983 1.90686 1.16182 1.87972 1.50597 1.45769 1.14626 1.04532 1.70245 1.20278 0.92622 0.84558 0.92336 1.22405 0.89589 1.00176 0.88442 1.86366 1.35393 1.96234 1.19980 1.21786 0.99375 0.96889 0.96144 1.22281 0.91562 1.01991 0.91419 1.61454 1.17119 1.42894 1.04393 1.21828 0.94666 1.02893 0.88200 1.20968 0.90876 0.81973 0.82427 1.90540 1.29724 1.54223 1.74423 1.42045 1.11936 1.63341 1.06254 1.18983 0.92144 1.44909 0.89532 0.92900 1.26129 1.03245 0.96426 0.95703 1.69812 1.33935 1.48084 1.05944 0.85350 0.77199 0.80181 0.78675 1.17948 1.20090 1.15531 1.21807 0.95854 0.90490 0.97234 1.21793 0.97909 1.02180 0.93477 0.91217 0.91200 0.91793 0.89434 0.90047 0.89786 0.83371 0.75531 0.93452 0.92390 0.75850 0.88129 0.90208 0.88297 0.93345 0.90851 0.85562 0.77551 0.91186 0.93524 0.95207 0.91674 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.49 71.24 0.61 -1.94 16 2 C -0.03 -0.55 6.11 -17.62 -0.11 -0.66 16 3 C -0.12 -1.19 10.01 71.23 0.71 -0.48 16 4 C -0.25 -4.41 9.63 23.43 0.23 -4.19 16 5 C 0.54 12.76 7.03 86.57 0.61 13.37 16 6 O -0.57 -17.03 9.51 -4.09 -0.04 -17.07 16 7 N -0.70 -14.15 3.99 -426.12 -1.70 -15.85 16 8 C 0.19 4.26 0.44 3.68 0.00 4.26 16 9 C 0.07 1.56 5.66 71.98 0.41 1.97 16 10 O -0.57 -10.17 12.97 -148.98 -1.93 -12.10 16 11 C -0.10 -1.99 4.80 30.69 0.15 -1.84 16 12 C 0.05 1.08 5.30 86.37 0.46 1.54 16 13 N -0.53 -16.12 4.35 -900.63 -3.91 -20.03 16 14 C 0.06 1.71 5.45 85.56 0.47 2.18 16 15 C 0.45 20.74 7.32 87.66 0.64 21.38 16 16 O -0.61 -34.36 14.28 -3.07 -0.04 -34.41 16 17 N -0.59 -28.44 5.09 -306.99 -1.56 -30.00 16 18 C -0.33 -19.46 10.16 84.04 0.85 -18.60 16 19 H 0.05 3.77 7.39 -2.91 -0.02 3.74 16 20 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 21 N -0.94 -57.36 13.96 21.66 0.30 -57.06 16 22 Si 0.97 39.13 27.74 68.60 1.90 41.03 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.23 -7.89 6.52 99.48 0.65 -7.25 16 26 C 0.07 2.49 4.97 86.33 0.43 2.92 16 27 C -0.11 -3.47 4.74 30.65 0.15 -3.33 16 28 H 0.07 1.50 8.07 -2.39 -0.02 1.48 16 29 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 30 H 0.06 1.71 6.03 -2.39 -0.01 1.70 16 31 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 33 H 0.08 0.60 8.07 -2.39 -0.02 0.58 16 34 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.41 6.26 7.39 -92.71 -0.69 5.57 16 36 H 0.05 1.22 6.28 -2.39 -0.01 1.21 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.39 3.91 9.12 -74.06 -0.68 3.24 16 39 H 0.10 1.56 7.84 -2.39 -0.02 1.54 16 40 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.10 1.62 8.01 -2.39 -0.02 1.60 16 42 H 0.05 0.79 6.97 -2.39 -0.02 0.78 16 43 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 44 H 0.13 3.09 7.97 -2.39 -0.02 3.07 16 45 H 0.39 15.35 5.76 -92.71 -0.53 14.82 16 46 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 47 H 0.05 2.04 6.06 -2.39 -0.01 2.02 16 48 H 0.03 0.93 7.69 -2.39 -0.02 0.92 16 49 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.07 2.38 6.10 -2.39 -0.01 2.37 16 Total: -1.00 -83.73 390.25 -1.90 -85.63 By element: Atomic # 1 Polarization: 44.73 SS G_CDS: -0.97 Total: 43.76 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 6.06 Total: 16.10 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -6.88 Total: -122.94 kcal Atomic # 8 Polarization: -61.56 SS G_CDS: -2.01 Total: -63.58 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.03 kcal Total: -83.73 -1.90 -85.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485012861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.650 kcal (2) G-P(sol) polarization free energy of solvation -83.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds