Wall clock time and date at job start Tue Mar 31 2020 22:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.53006 * 109.46992 * 269.99874 * 3 2 1 5 5 C 1.52995 * 109.46884 * 299.99712 * 4 3 2 6 6 C 1.52997 * 109.47030 * 59.99925 * 4 3 2 7 7 C 1.52997 * 109.46977 * 179.97438 * 4 3 2 8 8 N 1.46502 * 109.47219 * 179.97438 * 7 4 3 9 9 C 1.36936 * 120.00280 * 179.97438 * 8 7 4 10 10 H 1.08006 * 120.00216 * 0.02562 * 9 8 7 11 11 C 1.38808 * 119.99948 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00303 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00019 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47031 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47227 * 119.99917 * 13 11 9 16 16 H 1.48501 * 109.46944 * 240.00240 * 13 11 9 17 17 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 18 18 O 1.21280 * 120.00423 * 179.97438 * 17 2 1 19 19 C 1.50701 * 119.99795 * 0.02562 * 17 2 1 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 2 21 21 N 1.46500 * 109.47473 * 179.97438 * 20 19 17 22 22 C 1.33875 * 122.76488 * 269.71158 * 21 20 19 23 23 O 1.21230 * 125.39200 * 359.97438 * 22 21 20 24 24 C 1.51315 * 109.20750 * 179.83865 * 22 21 20 25 25 C 1.54230 * 103.55426 * 0.38916 * 24 22 21 26 26 C 1.33875 * 122.75903 * 89.99982 * 21 20 19 27 27 O 1.21226 * 125.40090 * 359.97438 * 26 21 20 28 28 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 29 29 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 30 30 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 31 31 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 32 32 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 33 33 H 1.08993 * 109.47393 * 60.00480 * 5 4 3 34 34 H 1.09006 * 109.46876 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.47359 * 299.99958 * 5 4 3 36 36 H 1.09000 * 109.47542 * 60.00124 * 6 4 3 37 37 H 1.08995 * 109.46890 * 180.02562 * 6 4 3 38 38 H 1.09004 * 109.46976 * 299.99885 * 6 4 3 39 39 H 1.08998 * 109.47532 * 300.00118 * 7 4 3 40 40 H 1.09000 * 109.47620 * 59.99963 * 7 4 3 41 41 H 0.96997 * 119.99904 * 0.02562 * 8 7 4 42 42 H 0.96996 * 120.00318 * 180.02562 * 12 11 9 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 2 44 44 H 1.09001 * 109.47380 * 59.99809 * 19 17 2 45 45 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 46 46 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 47 47 H 1.08998 * 110.79380 * 241.77795 * 24 22 21 48 48 H 1.09002 * 110.54273 * 118.87508 * 24 22 21 49 49 H 1.08995 * 110.60329 * 241.25892 * 25 24 22 50 50 H 1.08997 * 110.60287 * 118.29489 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2794 0.6440 -2.1637 6 6 1.1157 1.8933 -2.1638 7 6 3.2170 3.0356 -1.4426 8 7 3.4618 3.4582 -2.8238 9 6 4.1342 4.6245 -3.0740 10 1 4.4845 5.2328 -2.2532 11 6 4.3656 5.0251 -4.3828 12 7 3.9383 4.2842 -5.3832 13 14 5.2835 6.6159 -4.7242 14 1 5.6538 7.2595 -3.4381 15 1 6.5131 6.3206 -5.5026 16 1 4.4126 7.5324 -5.5031 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3853 -2.4723 0.0005 20 6 2.3795 -3.6352 0.0005 21 7 1.6470 -4.9040 0.0011 22 6 1.2901 -5.5340 1.1272 23 8 1.5213 -5.1461 2.2522 24 6 0.5495 -6.8051 0.7731 25 6 0.5490 -6.8055 -0.7692 26 6 1.2845 -5.5317 -1.1244 27 8 1.5092 -5.1412 -2.2498 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1384 0.5139 33 1 2.7344 -0.2999 -2.1637 34 1 3.4614 0.9588 -3.1913 35 1 4.2318 0.5136 -1.6498 36 1 0.5266 2.6529 -1.6501 37 1 1.2974 2.2074 -3.1915 38 1 0.5706 0.9493 -2.1638 39 1 2.6276 3.7951 -0.9289 40 1 4.1694 2.9057 -0.9286 41 1 3.1469 2.9121 -3.5610 42 1 4.1003 4.5640 -6.2977 43 1 0.7583 -2.5299 0.8903 44 1 0.7589 -2.5303 -0.8897 45 1 3.0062 -3.5775 -0.8895 46 1 3.0062 -3.5776 0.8904 47 1 -0.4703 -6.7785 1.1571 48 1 1.0801 -7.6765 1.1568 49 1 -0.4710 -6.7792 -1.1524 50 1 1.0817 -7.6757 -1.1526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485254773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:31 Heat of formation + Delta-G solvation = -86.493162 kcal Electronic energy + Delta-G solvation = -30366.388575 eV Core-core repulsion = 26201.561259 eV Total energy + Delta-G solvation = -4164.827316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.31631 -40.25372 -38.98347 -37.43553 -36.29797 -35.11948 -34.57995 -33.07788 -31.05180 -30.07225 -27.91460 -26.85039 -26.67411 -25.98881 -25.51580 -24.13930 -22.83366 -22.34609 -19.90421 -19.38633 -18.35364 -17.92861 -17.39141 -17.21838 -16.91433 -16.67060 -16.16875 -15.86389 -15.06052 -14.67233 -14.61547 -14.56425 -14.37119 -14.32923 -14.02144 -13.64915 -13.43718 -13.32066 -13.07161 -13.00786 -12.82471 -12.64853 -12.49476 -12.25716 -12.02243 -11.94290 -11.58260 -11.21010 -11.08231 -11.07818 -10.93335 -10.79524 -10.67857 -10.47076 -10.33502 -10.19839 -10.17278 -9.94161 -9.67351 -9.61124 -8.81481 -8.55761 -6.83460 -5.70561 -2.97939 1.05208 2.01811 2.23049 2.58207 3.00474 3.47113 3.52645 3.54953 3.56472 3.69787 3.88248 4.26628 4.35814 4.51469 4.59183 4.65202 4.88750 4.90308 5.01262 5.02568 5.08919 5.09693 5.14090 5.23215 5.26948 5.38388 5.45259 5.53322 5.59332 5.62088 5.75900 5.96002 6.00151 6.15371 6.19181 6.33437 6.38725 6.46384 6.57143 6.65418 6.78568 6.82678 6.85944 6.99239 7.03710 7.31355 7.33206 7.76324 8.13707 8.48978 9.60051 10.19590 10.54361 11.52681 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.002157 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.775308 B =12980.641948 C =13476.564826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.607 5.607 3 C 0.127 3.873 4 C -0.086 4.086 5 C -0.122 4.122 6 C -0.136 4.136 7 C 0.165 3.835 8 N -0.728 5.728 9 C -0.234 4.234 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.293 1.293 17 C 0.519 3.481 18 O -0.529 6.529 19 C -0.154 4.154 20 C 0.114 3.886 21 N -0.575 5.575 22 C 0.524 3.476 23 O -0.479 6.479 24 C -0.157 4.157 25 C -0.157 4.157 26 C 0.522 3.478 27 O -0.473 6.473 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.017 0.983 40 H 0.019 0.981 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.808 -24.999 14.386 31.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C 0.005 3.995 4 C -0.087 4.087 5 C -0.180 4.180 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.366 4.366 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.220 1.220 17 C 0.306 3.694 18 O -0.405 6.405 19 C -0.195 4.195 20 C -0.008 4.008 21 N -0.319 5.319 22 C 0.313 3.687 23 O -0.350 6.350 24 C -0.197 4.197 25 C -0.197 4.197 26 C 0.311 3.689 27 O -0.343 6.343 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.037 0.963 41 H 0.220 0.780 42 H 0.063 0.937 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.808 -24.387 14.417 31.091 hybrid contribution 0.233 0.851 -0.574 1.053 sum -12.575 -23.536 13.843 30.062 Atomic orbital electron populations 1.21967 0.79809 1.03768 1.01647 1.47739 1.06817 1.06229 1.73220 1.21579 0.97373 0.83383 0.97199 1.21108 0.96419 0.96999 0.94186 1.21706 0.99234 0.96169 1.00851 1.21886 0.95800 0.99777 1.01852 1.20583 0.95696 0.91173 0.88854 1.42398 1.68150 1.25753 1.00991 1.19288 1.27492 0.98065 0.91741 0.91223 1.24723 1.01881 0.98998 0.95599 1.69667 1.51760 1.38851 0.98079 0.86122 0.79192 0.83230 0.77699 1.20615 1.21945 1.21990 1.20122 0.87964 0.84876 0.76422 1.90749 1.13550 1.87173 1.49077 1.21952 0.99828 0.92949 1.04784 1.21527 0.93561 0.79127 1.06540 1.46844 1.52201 1.23366 1.09448 1.20880 0.77999 0.85989 0.83818 1.90809 1.53117 1.69834 1.21263 1.22482 1.03897 0.97317 0.95985 1.22489 1.04001 0.97314 0.95879 1.20904 0.78090 0.86077 0.83871 1.90840 1.52764 1.69601 1.21142 0.92693 0.89912 0.91411 0.90589 0.89711 0.94445 0.92176 0.92511 0.93254 0.91449 0.93662 0.96512 0.96276 0.78005 0.93654 0.88574 0.88410 0.87715 0.87863 0.86058 0.86118 0.86042 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 9.15 59.84 0.55 1.14 16 2 N -0.61 -7.27 2.40 -181.58 -0.44 -7.71 16 3 C 0.13 1.78 4.60 -4.04 -0.02 1.76 16 4 C -0.09 -1.46 0.60 -154.51 -0.09 -1.55 16 5 C -0.12 -2.29 6.97 37.15 0.26 -2.03 16 6 C -0.14 -2.17 7.05 37.16 0.26 -1.91 16 7 C 0.17 3.45 5.15 -4.04 -0.02 3.43 16 8 N -0.73 -18.88 5.00 -59.91 -0.30 -19.18 16 9 C -0.23 -6.74 9.99 -15.06 -0.15 -6.89 16 10 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 13 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 17 C 0.52 6.77 6.08 -10.98 -0.07 6.71 16 18 O -0.53 -8.79 13.75 5.56 0.08 -8.71 16 19 C -0.15 -1.49 4.58 -27.88 -0.13 -1.62 16 20 C 0.11 1.16 4.84 -4.04 -0.02 1.14 16 21 N -0.58 -4.63 2.55 -115.34 -0.29 -4.93 16 22 C 0.52 3.76 8.08 -11.09 -0.09 3.67 16 23 O -0.48 -5.20 17.47 5.60 0.10 -5.11 16 24 C -0.16 -0.35 7.03 -26.94 -0.19 -0.54 16 25 C -0.16 -0.39 7.03 -26.94 -0.19 -0.58 16 26 C 0.52 3.98 8.08 -11.08 -0.09 3.89 16 27 O -0.47 -5.60 17.48 5.60 0.10 -5.50 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.70 6.05 -51.93 -0.31 0.39 16 30 H 0.07 0.47 6.44 -51.93 -0.33 0.13 16 31 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 33 H 0.04 0.65 6.15 -51.93 -0.32 0.33 16 34 H 0.06 1.27 6.86 -51.93 -0.36 0.92 16 35 H 0.06 1.14 7.73 -51.93 -0.40 0.73 16 36 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.07 1.29 6.86 -51.93 -0.36 0.94 16 38 H 0.04 0.62 5.99 -51.93 -0.31 0.31 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.38 10.47 5.36 -40.82 -0.22 10.25 16 42 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.10 0.79 8.11 -51.93 -0.42 0.37 16 44 H 0.10 0.87 7.40 -51.93 -0.38 0.49 16 45 H 0.10 1.23 7.79 -51.93 -0.40 0.83 16 46 H 0.10 1.14 7.78 -51.93 -0.40 0.74 16 47 H 0.12 0.05 8.14 -51.93 -0.42 -0.37 16 48 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 49 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 50 H 0.12 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -37.33 396.52 -7.12 -44.45 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.95 Total: 4.88 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -0.08 Total: 6.05 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.31 Total: -60.01 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.27 Total: -19.32 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.33 -7.12 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485254773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.045 kcal (2) G-P(sol) polarization free energy of solvation -37.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds