Wall clock time and date at job start Wed Apr 1 2020 00:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46950 * 2 1 4 4 N 1.46494 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.46766 * 124.34934 * 269.99646 * 4 3 2 6 6 C 1.54479 * 105.47241 * 162.96248 * 5 4 3 7 7 H 1.09005 * 111.00411 * 267.28211 * 6 5 4 8 8 C 1.50706 * 110.96859 * 143.53889 * 6 5 4 9 9 O 1.21274 * 119.99785 * 6.16418 * 8 6 5 10 10 N 1.34778 * 119.99903 * 186.16584 * 8 6 5 11 11 C 1.46493 * 119.99869 * 174.57288 * 10 8 6 12 12 C 1.53005 * 112.94601 * 303.23989 * 11 10 8 13 13 C 1.53005 * 109.47070 * 303.71605 * 12 11 10 14 14 O 1.42893 * 109.47036 * 175.22173 * 13 12 11 15 15 C 1.53944 * 113.74427 * 171.64851 * 11 10 8 16 16 N 1.47814 * 86.04013 * 222.08453 * 15 11 10 17 17 C 1.36935 * 134.45924 * 204.64339 * 16 15 11 18 18 H 1.07995 * 119.99925 * 179.86314 * 17 16 15 19 19 C 1.38813 * 119.99868 * 359.86276 * 17 16 15 20 20 N 1.31621 * 120.00023 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99713 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47136 * 90.00427 * 21 19 17 23 23 H 1.48508 * 109.46817 * 210.00046 * 21 19 17 24 24 H 1.48498 * 109.47456 * 330.00089 * 21 19 17 25 25 C 1.47589 * 91.04912 * 24.54609 * 16 15 11 26 26 C 1.54623 * 101.76721 * 25.41620 * 6 5 4 27 27 C 1.34422 * 124.35224 * 89.97476 * 4 3 2 28 28 O 1.21279 * 124.93751 * 0.39156 * 27 4 3 29 29 H 1.09003 * 109.46671 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47314 * 299.99802 * 1 2 3 31 31 H 1.08998 * 109.47149 * 60.00628 * 1 2 3 32 32 H 1.08999 * 109.47314 * 240.00197 * 2 1 3 33 33 H 1.09004 * 109.47503 * 119.99655 * 2 1 3 34 34 H 1.08999 * 109.46951 * 59.99975 * 3 2 1 35 35 H 1.09003 * 109.47258 * 300.00071 * 3 2 1 36 36 H 1.08997 * 110.24320 * 43.96241 * 5 4 3 37 37 H 1.09000 * 110.24784 * 281.96027 * 5 4 3 38 38 H 0.96999 * 119.99899 * 354.84959 * 10 8 6 39 39 H 1.09002 * 109.47070 * 63.71656 * 12 11 10 40 40 H 1.08997 * 109.47293 * 183.71791 * 12 11 10 41 41 H 1.09003 * 109.47126 * 295.22679 * 13 12 11 42 42 H 1.09005 * 109.46601 * 55.22321 * 13 12 11 43 43 H 0.96704 * 114.00100 * 179.97438 * 14 13 12 44 44 H 1.09006 * 113.76395 * 336.34878 * 15 11 10 45 45 H 1.08996 * 113.77425 * 107.74192 * 15 11 10 46 46 H 0.97003 * 119.99890 * 179.97438 * 20 19 17 47 47 H 1.08997 * 113.76877 * 221.15375 * 25 16 15 48 48 H 1.08999 * 113.76830 * 89.75212 * 25 16 15 49 49 H 1.09008 * 110.48502 * 93.87964 * 26 6 5 50 50 H 1.08998 * 110.49141 * 216.52125 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3335 1.4426 1.2108 6 6 5.7411 1.0065 0.7472 7 1 5.8674 -0.0720 0.8433 8 6 6.8123 1.7422 1.5104 9 8 6.5091 2.4678 2.4336 10 7 8.1070 1.5939 1.1668 11 6 9.1372 2.3980 1.8287 12 6 8.8908 3.9029 1.7041 13 6 8.7799 4.2809 0.2256 14 8 8.4397 5.6640 0.1117 15 6 10.5750 1.9743 1.4777 16 7 10.8717 2.1625 2.9134 17 6 12.0056 2.4366 3.6306 18 1 11.9554 2.5299 4.7053 19 6 13.2195 2.5944 2.9761 20 7 13.2806 2.4811 1.6662 21 14 14.7661 2.9690 3.9544 22 1 15.4251 1.6968 4.3448 23 1 15.6962 3.7729 3.1212 24 1 14.4067 3.7352 5.1746 25 6 9.4554 1.9388 3.2633 26 6 5.7294 1.4318 -0.7393 27 6 4.2629 1.4423 -1.1107 28 8 3.8336 1.4488 -2.2449 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9389 0.7326 1.9376 37 1 4.3715 2.4430 1.6418 38 1 8.3563 0.9575 0.4785 39 1 7.9644 4.1630 2.2161 40 1 9.7207 4.4457 2.1565 41 1 9.7345 4.0995 -0.2684 42 1 8.0057 3.6762 -0.2468 43 1 8.3529 5.9740 -0.8002 44 1 10.6589 0.9401 1.1436 45 1 11.0931 2.6768 0.8250 46 1 14.1288 2.5917 1.2088 47 1 9.0814 2.6132 4.0336 48 1 9.2098 0.8943 3.4547 49 1 6.1593 2.4269 -0.8548 50 1 6.2718 0.7081 -1.3476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485417819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:30 Heat of formation + Delta-G solvation = -68.835959 kcal Electronic energy + Delta-G solvation = -30753.654270 eV Core-core repulsion = 26589.592627 eV Total energy + Delta-G solvation = -4164.061642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.06343 -39.82328 -38.01858 -36.53845 -36.41242 -35.04552 -33.77879 -32.23722 -31.46543 -30.30363 -27.94268 -27.24995 -26.56426 -25.12150 -24.02603 -22.97167 -22.12137 -21.60293 -20.08078 -19.65435 -18.74103 -17.63128 -17.18232 -17.05628 -16.84060 -16.18058 -15.54597 -15.51134 -15.05435 -14.84570 -14.72367 -14.52821 -14.06430 -13.96819 -13.93400 -13.77697 -13.67551 -13.14737 -13.03757 -12.56939 -12.48297 -12.26098 -12.03483 -11.81720 -11.74601 -11.67875 -11.58688 -11.53650 -11.11235 -11.08570 -10.98469 -10.80649 -10.74827 -10.27341 -10.12933 -9.99069 -9.76926 -9.63028 -9.25352 -8.97668 -8.93458 -8.66880 -6.98506 -5.85329 -3.17349 2.33624 2.64851 2.67710 3.24611 3.36724 3.42157 3.43449 3.99497 4.10485 4.39937 4.43510 4.56010 4.56444 4.60492 4.68227 4.88793 4.95568 5.06448 5.14434 5.18803 5.19900 5.25905 5.30751 5.39456 5.42038 5.44808 5.54166 5.64479 5.67632 5.69406 5.72869 5.76598 5.86478 5.89789 6.25352 6.26076 6.39625 6.42855 6.57300 6.70768 6.77835 6.82960 7.05198 7.22626 7.42919 7.69869 7.86268 7.89091 7.91566 8.35767 8.96656 9.62819 10.48062 11.32260 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.002465 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.782522 B =11354.002843 C =11808.472520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.125 3.875 4 N -0.619 5.619 5 C 0.118 3.882 6 C -0.126 4.126 7 H 0.117 0.883 8 C 0.523 3.477 9 O -0.528 6.528 10 N -0.711 5.711 11 C 0.124 3.876 12 C -0.097 4.097 13 C 0.083 3.917 14 O -0.574 6.574 15 C 0.166 3.834 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.082 0.918 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.125 3.875 26 C -0.146 4.146 27 C 0.521 3.479 28 O -0.532 6.532 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.399 0.601 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.372 0.628 44 H 0.031 0.969 45 H 0.082 0.918 46 H 0.255 0.745 47 H 0.051 0.949 48 H 0.036 0.964 49 H 0.109 0.891 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.539 -4.388 -5.674 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.353 5.353 5 C -0.005 4.005 6 C -0.148 4.148 7 H 0.135 0.865 8 C 0.308 3.692 9 O -0.404 6.404 10 N -0.361 5.361 11 C 0.038 3.962 12 C -0.135 4.135 13 C 0.005 3.995 14 O -0.379 6.379 15 C 0.040 3.960 16 N -0.331 5.331 17 C -0.347 4.347 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.002 4.002 26 C -0.186 4.186 27 C 0.308 3.692 28 O -0.409 6.409 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.233 0.767 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.218 0.782 44 H 0.049 0.951 45 H 0.100 0.900 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.127 0.873 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.674 -3.793 -4.886 21.579 hybrid contribution 1.094 -0.464 -0.408 1.257 sum -19.580 -4.257 -5.294 20.725 Atomic orbital electron populations 1.21692 0.94938 1.02083 1.02030 1.21917 0.96323 0.97071 1.02707 1.21454 0.77688 0.97147 1.03354 1.48352 1.06320 1.73322 1.07332 1.21987 0.87819 1.03936 0.86767 1.22282 0.94807 1.02531 0.95141 0.86505 1.19964 0.83371 0.81951 0.83956 1.90706 1.81962 1.38765 1.28968 1.46194 1.06022 1.42219 1.41713 1.22999 0.87567 0.90390 0.95222 1.21343 1.04162 0.93077 0.94930 1.22132 0.98168 0.81182 0.98010 1.86497 1.93360 1.26422 1.31606 1.22591 0.85988 0.98308 0.89110 1.45702 1.02891 1.81797 1.02723 1.18991 0.84182 1.41058 0.90508 0.89982 1.24776 0.97579 1.02073 0.95891 1.69779 1.25036 1.55708 1.06412 0.86092 0.82861 0.77807 0.78847 1.21609 1.21585 1.20523 1.22853 0.85719 0.97589 0.94064 1.22364 0.95453 1.05523 0.95263 1.20781 0.88972 0.75026 0.84389 1.90727 1.78559 1.50513 1.21103 0.92366 0.92477 0.92468 0.91555 0.91630 0.90141 0.89964 0.89785 0.88879 0.76699 0.90226 0.89204 0.93245 0.94825 0.78211 0.95139 0.89965 0.93550 0.93043 0.94627 0.87263 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.14 -1.00 6.26 -26.73 -0.17 -1.17 16 3 C 0.13 1.00 5.93 -4.04 -0.02 0.98 16 4 N -0.62 -5.88 2.93 -172.42 -0.51 -6.39 16 5 C 0.12 1.04 6.66 -3.12 -0.02 1.02 16 6 C -0.13 -1.10 3.55 -90.14 -0.32 -1.41 16 7 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 8 C 0.52 6.52 6.66 -10.98 -0.07 6.45 16 9 O -0.53 -8.48 13.76 5.56 0.08 -8.41 16 10 N -0.71 -9.17 4.48 -49.07 -0.22 -9.39 16 11 C 0.12 2.17 0.68 -134.02 -0.09 2.08 16 12 C -0.10 -1.76 4.67 -26.73 -0.12 -1.88 16 13 C 0.08 1.28 6.86 37.16 0.25 1.53 16 14 O -0.57 -8.85 13.66 -35.23 -0.48 -9.33 16 15 C 0.17 3.52 6.69 -2.84 -0.02 3.50 16 16 N -0.60 -14.78 3.55 -177.47 -0.63 -15.41 16 17 C -0.22 -5.98 10.70 -15.06 -0.16 -6.14 16 18 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -26.10 11.39 55.49 0.63 -25.47 16 21 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.12 2.54 8.03 -2.96 -0.02 2.52 16 26 C -0.15 -1.29 6.37 -26.75 -0.17 -1.46 16 27 C 0.52 5.93 8.02 -10.86 -0.09 5.85 16 28 O -0.53 -7.99 17.59 5.56 0.10 -7.89 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.97 7.06 -51.93 -0.37 0.61 16 38 H 0.40 4.10 8.67 -40.82 -0.35 3.74 16 39 H 0.08 1.52 6.55 -51.93 -0.34 1.18 16 40 H 0.09 1.93 8.02 -51.93 -0.42 1.51 16 41 H 0.05 0.78 7.58 -51.93 -0.39 0.39 16 42 H 0.03 0.45 7.13 -51.93 -0.37 0.08 16 43 H 0.37 3.82 9.12 45.56 0.42 4.23 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.94 6.56 -51.93 -0.34 1.60 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.05 1.08 8.10 -51.93 -0.42 0.66 16 48 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.11 1.02 7.55 -51.92 -0.39 0.63 16 50 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 404.68 15.07 6.10 6.10 Total: -1.00 -34.50 404.68 -8.30 -42.79 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.59 Total: 5.64 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -0.75 Total: 11.09 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.72 Total: -56.67 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.31 Total: -25.62 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.50 -8.30 -42.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485417819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.043 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds