Wall clock time and date at job start Wed Apr 1 2020 00:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46950 * 2 1 4 4 N 1.46494 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.46766 * 124.34934 * 269.99646 * 4 3 2 6 6 C 1.54479 * 105.47241 * 162.96248 * 5 4 3 7 7 H 1.09005 * 111.00411 * 267.28211 * 6 5 4 8 8 C 1.50706 * 110.96859 * 143.53889 * 6 5 4 9 9 O 1.21274 * 119.99785 * 6.16418 * 8 6 5 10 10 N 1.34778 * 119.99903 * 186.16584 * 8 6 5 11 11 C 1.46493 * 119.99869 * 174.57288 * 10 8 6 12 12 C 1.53005 * 112.94601 * 303.23989 * 11 10 8 13 13 C 1.53005 * 109.47070 * 303.71605 * 12 11 10 14 14 O 1.42893 * 109.47036 * 175.22173 * 13 12 11 15 15 C 1.53944 * 113.74427 * 171.64851 * 11 10 8 16 16 N 1.47814 * 86.04013 * 222.08453 * 15 11 10 17 17 C 1.36935 * 134.45924 * 204.64339 * 16 15 11 18 18 H 1.07995 * 119.99925 * 179.86314 * 17 16 15 19 19 C 1.38813 * 119.99868 * 359.86276 * 17 16 15 20 20 N 1.31621 * 120.00023 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99713 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47136 * 90.00427 * 21 19 17 23 23 H 1.48508 * 109.46817 * 210.00046 * 21 19 17 24 24 H 1.48498 * 109.47456 * 330.00089 * 21 19 17 25 25 C 1.47589 * 91.04912 * 24.54609 * 16 15 11 26 26 C 1.54623 * 101.76721 * 25.41620 * 6 5 4 27 27 C 1.34422 * 124.35224 * 89.97476 * 4 3 2 28 28 O 1.21279 * 124.93751 * 0.39156 * 27 4 3 29 29 H 1.09003 * 109.46671 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47314 * 299.99802 * 1 2 3 31 31 H 1.08998 * 109.47149 * 60.00628 * 1 2 3 32 32 H 1.08999 * 109.47314 * 240.00197 * 2 1 3 33 33 H 1.09004 * 109.47503 * 119.99655 * 2 1 3 34 34 H 1.08999 * 109.46951 * 59.99975 * 3 2 1 35 35 H 1.09003 * 109.47258 * 300.00071 * 3 2 1 36 36 H 1.08997 * 110.24320 * 43.96241 * 5 4 3 37 37 H 1.09000 * 110.24784 * 281.96027 * 5 4 3 38 38 H 0.96999 * 119.99899 * 354.84959 * 10 8 6 39 39 H 1.09002 * 109.47070 * 63.71656 * 12 11 10 40 40 H 1.08997 * 109.47293 * 183.71791 * 12 11 10 41 41 H 1.09003 * 109.47126 * 295.22679 * 13 12 11 42 42 H 1.09005 * 109.46601 * 55.22321 * 13 12 11 43 43 H 0.96704 * 114.00100 * 179.97438 * 14 13 12 44 44 H 1.09006 * 113.76395 * 336.34878 * 15 11 10 45 45 H 1.08996 * 113.77425 * 107.74192 * 15 11 10 46 46 H 0.97003 * 119.99890 * 179.97438 * 20 19 17 47 47 H 1.08997 * 113.76877 * 221.15375 * 25 16 15 48 48 H 1.08999 * 113.76830 * 89.75212 * 25 16 15 49 49 H 1.09008 * 110.48502 * 93.87964 * 26 6 5 50 50 H 1.08998 * 110.49141 * 216.52125 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3335 1.4426 1.2108 6 6 5.7411 1.0065 0.7472 7 1 5.8674 -0.0720 0.8433 8 6 6.8123 1.7422 1.5104 9 8 6.5091 2.4678 2.4336 10 7 8.1070 1.5939 1.1668 11 6 9.1372 2.3980 1.8287 12 6 8.8908 3.9029 1.7041 13 6 8.7799 4.2809 0.2256 14 8 8.4397 5.6640 0.1117 15 6 10.5750 1.9743 1.4777 16 7 10.8717 2.1625 2.9134 17 6 12.0056 2.4366 3.6306 18 1 11.9554 2.5299 4.7053 19 6 13.2195 2.5944 2.9761 20 7 13.2806 2.4811 1.6662 21 14 14.7661 2.9690 3.9544 22 1 15.4251 1.6968 4.3448 23 1 15.6962 3.7729 3.1212 24 1 14.4067 3.7352 5.1746 25 6 9.4554 1.9388 3.2633 26 6 5.7294 1.4318 -0.7393 27 6 4.2629 1.4423 -1.1107 28 8 3.8336 1.4488 -2.2449 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9389 0.7326 1.9376 37 1 4.3715 2.4430 1.6418 38 1 8.3563 0.9575 0.4785 39 1 7.9644 4.1630 2.2161 40 1 9.7207 4.4457 2.1565 41 1 9.7345 4.0995 -0.2684 42 1 8.0057 3.6762 -0.2468 43 1 8.3529 5.9740 -0.8002 44 1 10.6589 0.9401 1.1436 45 1 11.0931 2.6768 0.8250 46 1 14.1288 2.5917 1.2088 47 1 9.0814 2.6132 4.0336 48 1 9.2098 0.8943 3.4547 49 1 6.1593 2.4269 -0.8548 50 1 6.2718 0.7081 -1.3476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485417819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:29 Heat of formation + Delta-G solvation = -95.062620 kcal Electronic energy + Delta-G solvation = -30754.791543 eV Core-core repulsion = 26589.592627 eV Total energy + Delta-G solvation = -4165.198916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.00688 -41.04606 -39.34271 -37.69207 -37.43649 -35.72932 -35.25015 -33.81011 -32.49411 -31.65282 -29.02773 -28.70343 -27.30834 -26.80768 -25.33878 -24.13603 -23.17866 -22.70355 -21.20276 -20.48056 -20.11041 -18.76213 -18.59426 -18.26704 -17.95443 -17.21043 -16.88142 -16.66316 -16.41936 -16.02743 -15.84122 -15.56440 -15.46132 -15.10528 -14.99245 -14.74787 -14.62413 -14.37832 -14.05316 -13.79976 -13.60045 -13.30578 -13.14371 -13.06942 -12.89387 -12.81176 -12.77395 -12.56226 -12.46653 -12.39366 -12.20804 -12.17735 -12.02937 -11.71666 -11.64490 -11.41090 -11.08346 -10.94955 -10.85921 -10.51370 -10.00311 -9.73496 -8.93790 -7.92159 -5.24235 1.46911 1.47992 1.48862 1.56475 1.64420 1.87070 2.19988 2.50299 3.15015 3.20309 3.28607 3.34276 3.44458 3.65961 3.79672 3.89498 4.02125 4.05485 4.13727 4.20291 4.31687 4.35343 4.38442 4.45535 4.52822 4.59530 4.63979 4.70764 4.74549 4.76774 4.82944 4.88976 4.89883 4.98733 5.06465 5.16100 5.18024 5.19956 5.21031 5.25881 5.34410 5.50796 5.57220 5.74436 5.91897 6.06049 6.65463 6.90092 6.92142 7.08633 7.32663 7.58779 8.51692 9.24623 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.002465 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.782522 B =11354.002843 C =11808.472520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.119 3.881 4 N -0.615 5.615 5 C 0.119 3.881 6 C -0.109 4.109 7 H 0.151 0.849 8 C 0.528 3.472 9 O -0.562 6.562 10 N -0.701 5.701 11 C 0.158 3.842 12 C -0.090 4.090 13 C 0.091 3.909 14 O -0.593 6.593 15 C 0.170 3.830 16 N -0.634 5.634 17 C -0.233 4.233 18 H 0.079 0.921 19 C -0.059 4.059 20 N -0.947 5.947 21 Si 0.975 3.025 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.273 1.273 25 C 0.122 3.878 26 C -0.139 4.139 27 C 0.513 3.487 28 O -0.576 6.576 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.417 0.583 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.395 0.605 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.250 0.750 47 H 0.040 0.960 48 H 0.049 0.951 49 H 0.107 0.893 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.818 -5.555 -5.696 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.347 5.347 5 C -0.004 4.004 6 C -0.131 4.131 7 H 0.169 0.831 8 C 0.314 3.686 9 O -0.440 6.440 10 N -0.354 5.354 11 C 0.071 3.929 12 C -0.129 4.129 13 C 0.013 3.987 14 O -0.401 6.401 15 C 0.045 3.955 16 N -0.361 5.361 17 C -0.361 4.361 18 H 0.097 0.903 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.803 3.197 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.198 1.198 25 C -0.004 4.004 26 C -0.179 4.179 27 C 0.302 3.698 28 O -0.456 6.456 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.254 0.746 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.245 0.755 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.125 0.875 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.000 -4.980 -4.910 23.085 hybrid contribution 1.386 -0.060 -0.352 1.431 sum -20.614 -5.041 -5.262 21.864 Atomic orbital electron populations 1.21682 0.93904 1.02554 1.02396 1.21842 0.97183 0.96105 1.02171 1.21609 0.77002 0.97964 1.03615 1.48474 1.06970 1.72127 1.07150 1.22023 0.87903 1.03794 0.86694 1.22213 0.92952 1.03720 0.94166 0.83147 1.20504 0.83372 0.81260 0.83450 1.90715 1.82389 1.40201 1.30660 1.45918 1.05455 1.42123 1.41890 1.22156 0.87127 0.90386 0.93249 1.21197 1.01820 0.93121 0.96786 1.21989 0.98921 0.81901 0.95856 1.86438 1.93311 1.26286 1.34067 1.22484 0.87923 0.97928 0.87209 1.45997 1.03672 1.82110 1.04346 1.19281 0.85508 1.40473 0.90861 0.90315 1.25516 1.00195 1.02697 0.96903 1.69929 1.25194 1.56903 1.07487 0.85136 0.79348 0.77519 0.77667 1.21216 1.21933 1.19815 1.22972 0.83776 0.97980 0.95649 1.22379 0.93959 1.06202 0.95407 1.21193 0.90139 0.74414 0.84069 1.90706 1.79423 1.52697 1.22769 0.91852 0.91378 0.92864 0.93424 0.90700 0.88264 0.91334 0.87566 0.90412 0.74580 0.91055 0.93296 0.93781 0.91989 0.75502 0.94453 0.92604 0.94066 0.94191 0.93319 0.87475 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.71 16 2 C -0.13 -1.67 6.26 30.59 0.19 -1.48 16 3 C 0.12 1.72 5.93 86.38 0.51 2.23 16 4 N -0.61 -10.40 2.93 -817.99 -2.40 -12.80 16 5 C 0.12 1.75 6.66 86.83 0.58 2.33 16 6 C -0.11 -1.51 3.55 -10.48 -0.04 -1.54 16 7 H 0.15 1.22 8.14 -2.38 -0.02 1.20 16 8 C 0.53 11.72 6.66 87.66 0.58 12.30 16 9 O -0.56 -17.07 13.76 -3.01 -0.04 -17.11 16 10 N -0.70 -16.39 4.48 -427.54 -1.92 -18.31 16 11 C 0.16 5.43 0.68 5.36 0.00 5.43 16 12 C -0.09 -3.31 4.67 30.60 0.14 -3.17 16 13 C 0.09 2.71 6.86 71.98 0.49 3.21 16 14 O -0.59 -17.63 13.66 -148.98 -2.03 -19.66 16 15 C 0.17 7.24 6.69 86.44 0.58 7.82 16 16 N -0.63 -31.46 3.55 -715.40 -2.54 -34.00 16 17 C -0.23 -12.87 10.70 84.03 0.90 -11.97 16 18 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 19 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 20 N -0.95 -54.46 11.39 21.65 0.25 -54.21 16 21 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 C 0.12 4.97 8.03 86.49 0.69 5.66 16 26 C -0.14 -2.03 6.37 30.59 0.19 -1.83 16 27 C 0.51 10.78 8.02 87.90 0.71 11.48 16 28 O -0.58 -16.89 17.59 -3.03 -0.05 -16.95 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.19 7.92 -2.39 -0.02 1.17 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.46 7.06 -2.39 -0.02 1.44 16 38 H 0.42 7.13 8.67 -92.71 -0.80 6.33 16 39 H 0.07 2.73 6.55 -2.39 -0.02 2.72 16 40 H 0.05 2.18 8.02 -2.39 -0.02 2.16 16 41 H 0.04 1.37 7.58 -2.39 -0.02 1.35 16 42 H 0.06 1.50 7.13 -2.38 -0.02 1.48 16 43 H 0.40 7.42 9.12 -74.05 -0.68 6.74 16 44 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.06 2.68 6.56 -2.39 -0.02 2.67 16 46 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 47 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 48 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.11 1.67 7.55 -2.38 -0.02 1.65 16 50 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -77.02 404.68 -0.51 -77.53 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.52 Total: 21.49 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: 6.72 Total: 26.91 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -6.61 Total: -119.32 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -2.13 Total: -53.72 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -77.02 -0.51 -77.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485417819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.533 kcal (2) G-P(sol) polarization free energy of solvation -77.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds