Wall clock time and date at job start Wed Apr 1 2020 00:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47136 * 2 1 4 4 N 1.46494 * 109.47240 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.34999 * 269.72928 * 4 3 2 6 6 C 1.54309 * 105.56330 * 196.88662 * 5 4 3 7 7 H 1.08998 * 110.74594 * 93.00047 * 6 5 4 8 8 C 1.50700 * 111.14687 * 216.68992 * 6 5 4 9 9 O 1.21281 * 120.00503 * 354.03675 * 8 6 5 10 10 N 1.34777 * 119.99915 * 174.02695 * 8 6 5 11 11 C 1.46504 * 120.00031 * 175.09428 * 10 8 6 12 12 C 1.52999 * 112.94600 * 303.25434 * 11 10 8 13 13 C 1.52998 * 109.47148 * 304.08000 * 12 11 10 14 14 O 1.42897 * 109.47128 * 175.18820 * 13 12 11 15 15 C 1.53951 * 113.74029 * 171.65919 * 11 10 8 16 16 N 1.47812 * 86.03394 * 222.08893 * 15 11 10 17 17 C 1.36942 * 134.45444 * 204.64863 * 16 15 11 18 18 H 1.07995 * 119.99937 * 184.80163 * 17 16 15 19 19 C 1.38821 * 119.99803 * 4.79980 * 17 16 15 20 20 N 1.31615 * 120.00040 * 5.09224 * 19 17 16 21 21 Si 1.86799 * 119.99613 * 185.09324 * 19 17 16 22 22 H 1.48497 * 109.47285 * 94.99905 * 21 19 17 23 23 H 1.48504 * 109.46640 * 214.99755 * 21 19 17 24 24 H 1.48494 * 109.47333 * 334.99706 * 21 19 17 25 25 C 1.47574 * 91.05415 * 24.54963 * 16 15 11 26 26 C 1.54626 * 101.84348 * 334.93248 * 6 5 4 27 27 C 1.34420 * 124.35320 * 90.02425 * 4 3 2 28 28 O 1.21283 * 124.93822 * 359.62046 * 27 4 3 29 29 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47253 * 59.99843 * 1 2 3 31 31 H 1.08996 * 109.47199 * 299.99625 * 1 2 3 32 32 H 1.08993 * 109.47253 * 120.00157 * 2 1 3 33 33 H 1.09005 * 109.47055 * 240.00457 * 2 1 3 34 34 H 1.09000 * 109.47103 * 300.00613 * 3 2 1 35 35 H 1.08996 * 109.46771 * 60.00112 * 3 2 1 36 36 H 1.09005 * 110.24719 * 316.00880 * 5 4 3 37 37 H 1.08994 * 110.25026 * 78.01642 * 5 4 3 38 38 H 0.97005 * 120.00325 * 355.10062 * 10 8 6 39 39 H 1.09000 * 109.47054 * 64.08154 * 12 11 10 40 40 H 1.09001 * 109.46999 * 184.08041 * 12 11 10 41 41 H 1.08998 * 109.47153 * 295.19238 * 13 12 11 42 42 H 1.08998 * 109.47026 * 55.18653 * 13 12 11 43 43 H 0.96708 * 113.99939 * 179.97438 * 14 13 12 44 44 H 1.08999 * 113.76813 * 336.35188 * 15 11 10 45 45 H 1.08995 * 113.76565 * 107.75087 * 15 11 10 46 46 H 0.97004 * 120.00158 * 180.02562 * 20 19 17 47 47 H 1.09007 * 113.76961 * 221.15215 * 25 16 15 48 48 H 1.08998 * 113.77115 * 89.75779 * 25 16 15 49 49 H 1.09001 * 110.48429 * 265.90590 * 26 6 5 50 50 H 1.08998 * 110.59785 * 143.31868 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3336 1.4481 1.2107 6 6 5.7413 1.8778 0.7473 7 1 5.8672 2.9561 0.8441 8 6 6.8129 1.1420 1.5099 9 8 6.5103 0.4157 2.4329 10 7 8.1075 1.2909 1.1662 11 6 9.1566 0.6622 1.9727 12 6 9.1123 1.0842 3.4427 13 6 9.1911 2.6091 3.5382 14 8 9.0372 3.0096 4.9012 15 6 10.5590 0.7517 1.3441 16 7 10.7288 -0.6525 1.7734 17 6 11.8090 -1.4431 2.0626 18 1 11.6672 -2.4897 2.2879 19 6 13.0861 -0.8990 2.0662 20 7 13.2507 0.3950 1.8909 21 14 14.5710 -2.0036 2.3198 22 1 15.1262 -2.3974 1.0000 23 1 15.6058 -1.2718 3.0938 24 1 14.1615 -3.2197 3.0672 25 6 9.2677 -0.8595 1.7677 26 6 5.7295 1.4531 -0.7394 27 6 4.2630 1.4432 -1.1107 28 8 3.8337 1.4372 -2.2450 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 3.9393 2.1617 1.9342 37 1 4.3713 0.4498 1.6465 38 1 8.3448 1.8145 0.3848 39 1 8.1808 0.7396 3.8917 40 1 9.9562 0.6429 3.9729 41 1 10.1587 2.9469 3.1672 42 1 8.3969 3.0523 2.9374 43 1 9.0771 3.9663 5.0370 44 1 10.5479 0.8819 0.2620 45 1 11.2239 1.4508 1.8512 46 1 14.1432 0.7751 1.8930 47 1 8.9035 -1.4443 2.6124 48 1 8.8764 -1.2036 0.8103 49 1 6.1591 0.4580 -0.8553 50 1 6.2725 2.1754 -1.3489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485417820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:34 Heat of formation + Delta-G solvation = -68.355090 kcal Electronic energy + Delta-G solvation = -30657.018140 eV Core-core repulsion = 26492.977350 eV Total energy + Delta-G solvation = -4164.040790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.04938 -39.81743 -38.01127 -36.51975 -36.40286 -35.03799 -33.77105 -32.22765 -31.45680 -30.26417 -27.95675 -27.23424 -26.55234 -25.11439 -24.02936 -22.94616 -22.07929 -21.59201 -20.13550 -19.61197 -18.71004 -17.66970 -17.18996 -16.96099 -16.84569 -16.13182 -15.53806 -15.49543 -15.07040 -14.85439 -14.70205 -14.53925 -14.11481 -13.95741 -13.81766 -13.77550 -13.56793 -13.27542 -13.02352 -12.57147 -12.47707 -12.17568 -11.92094 -11.83532 -11.78264 -11.65219 -11.60099 -11.50966 -11.13700 -11.03204 -10.94131 -10.80267 -10.73692 -10.26420 -10.10571 -10.00668 -9.73600 -9.64066 -9.25692 -8.96204 -8.92892 -8.67777 -6.96799 -5.84451 -3.18006 2.35546 2.63024 2.70549 3.25368 3.36734 3.42512 3.43755 4.00797 4.10609 4.40168 4.44622 4.56876 4.58987 4.64093 4.70598 4.93109 4.97266 5.09003 5.14952 5.18735 5.20937 5.28135 5.32438 5.42671 5.44357 5.49573 5.49957 5.67076 5.70265 5.71629 5.77501 5.78071 5.90609 5.91911 6.26180 6.27799 6.41126 6.42233 6.57201 6.72343 6.79139 6.83781 7.06817 7.25076 7.44301 7.70348 7.87326 7.90456 7.92855 8.36294 8.96367 9.63099 10.48329 11.31678 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.002576 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.026831 B =10866.343790 C =11553.239206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.125 4.125 7 H 0.116 0.884 8 C 0.523 3.477 9 O -0.528 6.528 10 N -0.711 5.711 11 C 0.126 3.874 12 C -0.096 4.096 13 C 0.083 3.917 14 O -0.574 6.574 15 C 0.157 3.843 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.124 3.876 26 C -0.147 4.147 27 C 0.521 3.479 28 O -0.532 6.532 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.398 0.602 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.371 0.629 44 H 0.028 0.972 45 H 0.090 0.910 46 H 0.254 0.746 47 H 0.051 0.949 48 H 0.036 0.964 49 H 0.112 0.888 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.905 8.210 -2.064 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.005 4.005 6 C -0.147 4.147 7 H 0.134 0.866 8 C 0.307 3.693 9 O -0.404 6.404 10 N -0.362 5.362 11 C 0.040 3.960 12 C -0.135 4.135 13 C 0.006 3.994 14 O -0.379 6.379 15 C 0.031 3.969 16 N -0.330 5.330 17 C -0.347 4.347 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.003 4.003 26 C -0.187 4.187 27 C 0.308 3.692 28 O -0.409 6.409 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.217 0.783 44 H 0.046 0.954 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.130 0.870 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.109 6.953 -1.825 21.355 hybrid contribution 1.077 0.319 -0.520 1.238 sum -19.032 7.272 -2.345 20.508 Atomic orbital electron populations 1.21688 0.94963 1.02127 1.01892 1.21929 0.96274 0.97070 1.02947 1.21448 0.77642 0.97252 1.03136 1.48353 1.06329 1.73364 1.07328 1.21950 0.87871 1.03982 0.86723 1.22254 0.94827 1.02397 0.95242 0.86575 1.19960 0.83382 0.81774 0.84145 1.90709 1.81880 1.37837 1.29951 1.46218 1.05459 1.53891 1.30625 1.22999 0.87632 0.94214 0.91138 1.21332 1.04435 0.93451 0.94233 1.22116 0.99058 0.96351 0.81898 1.86503 1.96438 1.27369 1.27571 1.22719 0.88641 0.89555 0.95958 1.45633 0.99783 1.09619 1.77951 1.18998 0.83804 0.91505 1.40439 0.90043 1.24771 0.97332 0.96082 1.02094 1.69775 1.21357 1.09701 1.55837 0.86073 0.82499 0.79452 0.77603 1.21653 1.21634 1.20484 1.22864 0.86056 0.92893 0.98467 1.22372 0.95447 1.05737 0.95180 1.20786 0.88987 0.75017 0.84377 1.90730 1.78564 1.50468 1.21104 0.92335 0.92532 0.92532 0.91448 0.91523 0.90022 0.90246 0.89776 0.88960 0.76740 0.90249 0.89147 0.93254 0.94791 0.78297 0.95411 0.89195 0.93588 0.93077 0.94619 0.87028 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.14 -1.16 6.26 -26.73 -0.17 -1.32 16 3 C 0.13 1.02 5.93 -4.05 -0.02 1.00 16 4 N -0.62 -5.95 2.93 -172.53 -0.51 -6.45 16 5 C 0.12 1.04 6.68 -3.21 -0.02 1.02 16 6 C -0.13 -1.09 3.53 -90.23 -0.32 -1.41 16 7 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 8 C 0.52 6.54 6.64 -10.99 -0.07 6.47 16 9 O -0.53 -8.52 13.76 5.56 0.08 -8.44 16 10 N -0.71 -9.20 4.48 -49.07 -0.22 -9.42 16 11 C 0.13 2.21 0.68 -134.03 -0.09 2.12 16 12 C -0.10 -1.76 4.67 -26.73 -0.12 -1.88 16 13 C 0.08 1.28 6.86 37.16 0.25 1.54 16 14 O -0.57 -8.75 13.66 -35.23 -0.48 -9.23 16 15 C 0.16 3.33 6.90 -2.84 -0.02 3.31 16 16 N -0.60 -14.77 3.54 -177.51 -0.63 -15.40 16 17 C -0.22 -5.99 10.70 -15.05 -0.16 -6.15 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -25.94 11.29 55.49 0.63 -25.31 16 21 Si 0.91 21.71 29.56 -169.99 -5.02 16.68 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.12 2.54 8.04 -2.97 -0.02 2.52 16 26 C -0.15 -1.33 6.31 -26.74 -0.17 -1.50 16 27 C 0.52 6.03 8.02 -10.86 -0.09 5.95 16 28 O -0.53 -8.12 17.59 5.56 0.10 -8.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.97 7.05 -51.93 -0.37 0.61 16 38 H 0.40 4.10 8.61 -40.82 -0.35 3.75 16 39 H 0.08 1.53 6.54 -51.93 -0.34 1.19 16 40 H 0.09 1.97 8.02 -51.93 -0.42 1.55 16 41 H 0.05 0.78 7.61 -51.93 -0.40 0.39 16 42 H 0.03 0.45 7.43 -51.93 -0.39 0.06 16 43 H 0.37 3.66 9.12 45.56 0.42 4.08 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 2.12 6.29 -51.93 -0.33 1.80 16 46 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.05 1.09 8.10 -51.93 -0.42 0.66 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.11 1.08 7.89 -51.93 -0.41 0.67 16 50 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 405.04 15.07 6.10 6.10 Total: -1.00 -34.52 405.04 -8.31 -42.83 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.60 Total: 5.84 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -0.75 Total: 10.83 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.73 Total: -56.58 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.31 Total: -25.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.52 -8.31 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485417820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.526 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds