Wall clock time and date at job start Wed Apr 1 2020 00:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47136 * 2 1 4 4 N 1.46494 * 109.47240 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.34999 * 269.72928 * 4 3 2 6 6 C 1.54309 * 105.56330 * 196.88662 * 5 4 3 7 7 H 1.08998 * 110.74594 * 93.00047 * 6 5 4 8 8 C 1.50700 * 111.14687 * 216.68992 * 6 5 4 9 9 O 1.21281 * 120.00503 * 354.03675 * 8 6 5 10 10 N 1.34777 * 119.99915 * 174.02695 * 8 6 5 11 11 C 1.46504 * 120.00031 * 175.09428 * 10 8 6 12 12 C 1.52999 * 112.94600 * 303.25434 * 11 10 8 13 13 C 1.52998 * 109.47148 * 304.08000 * 12 11 10 14 14 O 1.42897 * 109.47128 * 175.18820 * 13 12 11 15 15 C 1.53951 * 113.74029 * 171.65919 * 11 10 8 16 16 N 1.47812 * 86.03394 * 222.08893 * 15 11 10 17 17 C 1.36942 * 134.45444 * 204.64863 * 16 15 11 18 18 H 1.07995 * 119.99937 * 184.80163 * 17 16 15 19 19 C 1.38821 * 119.99803 * 4.79980 * 17 16 15 20 20 N 1.31615 * 120.00040 * 5.09224 * 19 17 16 21 21 Si 1.86799 * 119.99613 * 185.09324 * 19 17 16 22 22 H 1.48497 * 109.47285 * 94.99905 * 21 19 17 23 23 H 1.48504 * 109.46640 * 214.99755 * 21 19 17 24 24 H 1.48494 * 109.47333 * 334.99706 * 21 19 17 25 25 C 1.47574 * 91.05415 * 24.54963 * 16 15 11 26 26 C 1.54626 * 101.84348 * 334.93248 * 6 5 4 27 27 C 1.34420 * 124.35320 * 90.02425 * 4 3 2 28 28 O 1.21283 * 124.93822 * 359.62046 * 27 4 3 29 29 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47253 * 59.99843 * 1 2 3 31 31 H 1.08996 * 109.47199 * 299.99625 * 1 2 3 32 32 H 1.08993 * 109.47253 * 120.00157 * 2 1 3 33 33 H 1.09005 * 109.47055 * 240.00457 * 2 1 3 34 34 H 1.09000 * 109.47103 * 300.00613 * 3 2 1 35 35 H 1.08996 * 109.46771 * 60.00112 * 3 2 1 36 36 H 1.09005 * 110.24719 * 316.00880 * 5 4 3 37 37 H 1.08994 * 110.25026 * 78.01642 * 5 4 3 38 38 H 0.97005 * 120.00325 * 355.10062 * 10 8 6 39 39 H 1.09000 * 109.47054 * 64.08154 * 12 11 10 40 40 H 1.09001 * 109.46999 * 184.08041 * 12 11 10 41 41 H 1.08998 * 109.47153 * 295.19238 * 13 12 11 42 42 H 1.08998 * 109.47026 * 55.18653 * 13 12 11 43 43 H 0.96708 * 113.99939 * 179.97438 * 14 13 12 44 44 H 1.08999 * 113.76813 * 336.35188 * 15 11 10 45 45 H 1.08995 * 113.76565 * 107.75087 * 15 11 10 46 46 H 0.97004 * 120.00158 * 180.02562 * 20 19 17 47 47 H 1.09007 * 113.76961 * 221.15215 * 25 16 15 48 48 H 1.08998 * 113.77115 * 89.75779 * 25 16 15 49 49 H 1.09001 * 110.48429 * 265.90590 * 26 6 5 50 50 H 1.08998 * 110.59785 * 143.31868 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3336 1.4481 1.2107 6 6 5.7413 1.8778 0.7473 7 1 5.8672 2.9561 0.8441 8 6 6.8129 1.1420 1.5099 9 8 6.5103 0.4157 2.4329 10 7 8.1075 1.2909 1.1662 11 6 9.1566 0.6622 1.9727 12 6 9.1123 1.0842 3.4427 13 6 9.1911 2.6091 3.5382 14 8 9.0372 3.0096 4.9012 15 6 10.5590 0.7517 1.3441 16 7 10.7288 -0.6525 1.7734 17 6 11.8090 -1.4431 2.0626 18 1 11.6672 -2.4897 2.2879 19 6 13.0861 -0.8990 2.0662 20 7 13.2507 0.3950 1.8909 21 14 14.5710 -2.0036 2.3198 22 1 15.1262 -2.3974 1.0000 23 1 15.6058 -1.2718 3.0938 24 1 14.1615 -3.2197 3.0672 25 6 9.2677 -0.8595 1.7677 26 6 5.7295 1.4531 -0.7394 27 6 4.2630 1.4432 -1.1107 28 8 3.8337 1.4372 -2.2450 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 3.9393 2.1617 1.9342 37 1 4.3713 0.4498 1.6465 38 1 8.3448 1.8145 0.3848 39 1 8.1808 0.7396 3.8917 40 1 9.9562 0.6429 3.9729 41 1 10.1587 2.9469 3.1672 42 1 8.3969 3.0523 2.9374 43 1 9.0771 3.9663 5.0370 44 1 10.5479 0.8819 0.2620 45 1 11.2239 1.4508 1.8512 46 1 14.1432 0.7751 1.8930 47 1 8.9035 -1.4443 2.6124 48 1 8.8764 -1.2036 0.8103 49 1 6.1591 0.4580 -0.8553 50 1 6.2725 2.1754 -1.3489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485417820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:33 Heat of formation + Delta-G solvation = -94.724766 kcal Electronic energy + Delta-G solvation = -30658.161615 eV Core-core repulsion = 26492.977350 eV Total energy + Delta-G solvation = -4165.184265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.99952 -41.05078 -39.34159 -37.65389 -37.43839 -35.75944 -35.24875 -33.81259 -32.51997 -31.59575 -29.04983 -28.70115 -27.30893 -26.80915 -25.34796 -24.10573 -23.16945 -22.72200 -21.25846 -20.47624 -20.05809 -18.79891 -18.59873 -18.33861 -17.79598 -17.14626 -16.90348 -16.68076 -16.42740 -16.05049 -15.84371 -15.63490 -15.43382 -15.09746 -14.87216 -14.81229 -14.57535 -14.43071 -14.15580 -13.78146 -13.54186 -13.28715 -13.21473 -13.06719 -12.87465 -12.79195 -12.72707 -12.54055 -12.50316 -12.38955 -12.19665 -12.18854 -12.01479 -11.73982 -11.66669 -11.41409 -11.09414 -10.92387 -10.83170 -10.52710 -10.00598 -9.74343 -8.92524 -7.91313 -5.25327 1.46843 1.47235 1.48434 1.56267 1.64323 1.87416 2.20003 2.49651 3.16609 3.21780 3.27241 3.34661 3.43173 3.67693 3.81868 3.89798 4.00971 4.04601 4.16328 4.21103 4.33485 4.34747 4.41682 4.51994 4.52765 4.55943 4.64485 4.67749 4.74271 4.76215 4.82077 4.87172 4.88148 4.97720 5.08747 5.14510 5.16788 5.18396 5.22794 5.28796 5.32484 5.51514 5.56994 5.75142 5.93877 6.05398 6.65595 6.91570 6.96075 7.08209 7.32973 7.58394 8.51453 9.23730 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.002576 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.026831 B =10866.343790 C =11553.239206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.122 3.878 4 N -0.615 5.615 5 C 0.118 3.882 6 C -0.107 4.107 7 H 0.155 0.845 8 C 0.527 3.473 9 O -0.562 6.562 10 N -0.701 5.701 11 C 0.161 3.839 12 C -0.090 4.090 13 C 0.093 3.907 14 O -0.593 6.593 15 C 0.161 3.839 16 N -0.633 5.633 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.057 4.057 20 N -0.943 5.943 21 Si 0.974 3.026 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.273 1.273 25 C 0.120 3.880 26 C -0.142 4.142 27 C 0.513 3.487 28 O -0.577 6.577 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.416 0.584 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.396 0.604 44 H 0.037 0.963 45 H 0.065 0.935 46 H 0.251 0.749 47 H 0.037 0.963 48 H 0.047 0.953 49 H 0.104 0.896 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.249 9.864 -2.036 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.001 3.999 4 N -0.347 5.347 5 C -0.005 4.005 6 C -0.129 4.129 7 H 0.172 0.828 8 C 0.314 3.686 9 O -0.440 6.440 10 N -0.354 5.354 11 C 0.073 3.927 12 C -0.129 4.129 13 C 0.015 3.985 14 O -0.401 6.401 15 C 0.035 3.965 16 N -0.359 5.359 17 C -0.363 4.363 18 H 0.094 0.906 19 C -0.251 4.251 20 N -0.591 5.591 21 Si 0.803 3.197 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.198 1.198 25 C -0.006 4.006 26 C -0.182 4.182 27 C 0.301 3.699 28 O -0.457 6.457 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.254 0.746 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.246 0.754 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.064 0.936 49 H 0.122 0.878 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.496 8.639 -1.792 23.236 hybrid contribution 1.398 -0.242 -0.478 1.497 sum -20.098 8.397 -2.270 21.900 Atomic orbital electron populations 1.21665 0.93476 1.02454 1.02689 1.21880 0.97586 0.96918 1.01512 1.21616 0.76885 0.97273 1.04141 1.48476 1.07024 1.72076 1.07125 1.22010 0.87998 1.03838 0.86657 1.22193 0.92922 1.03789 0.93970 0.82751 1.20521 0.83408 0.81055 0.83663 1.90720 1.82323 1.39264 1.31714 1.45934 1.04831 1.53861 1.30767 1.22148 0.87244 0.92258 0.91043 1.21181 1.01908 0.95829 0.93947 1.21956 0.99895 0.93993 0.82649 1.86443 1.96424 1.29956 1.27322 1.22625 0.90225 0.87427 0.96194 1.45921 1.00762 1.10931 1.78333 1.19268 0.85138 0.91860 1.40065 0.90555 1.25505 0.99628 0.97412 1.02577 1.69926 1.21419 1.10830 1.56914 0.85122 0.79206 0.77994 0.77377 1.21392 1.21849 1.19769 1.22980 0.84123 0.95176 0.98304 1.22381 0.93976 1.06176 0.95634 1.21200 0.90164 0.74400 0.84087 1.90707 1.79446 1.52697 1.22828 0.92296 0.92447 0.90985 0.91667 0.94109 0.90754 0.87424 0.87144 0.90756 0.74598 0.91050 0.93578 0.93935 0.91540 0.75434 0.94485 0.91708 0.94034 0.94453 0.93557 0.87755 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.14 -2.15 6.26 30.60 0.19 -1.96 16 3 C 0.12 1.74 5.93 86.38 0.51 2.26 16 4 N -0.61 -10.50 2.93 -818.36 -2.40 -12.90 16 5 C 0.12 1.73 6.68 86.77 0.58 2.31 16 6 C -0.11 -1.47 3.53 -10.54 -0.04 -1.50 16 7 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 8 C 0.53 11.76 6.64 87.66 0.58 12.34 16 9 O -0.56 -17.25 13.76 -3.03 -0.04 -17.29 16 10 N -0.70 -16.44 4.48 -427.55 -1.92 -18.36 16 11 C 0.16 5.54 0.68 5.36 0.00 5.55 16 12 C -0.09 -3.29 4.67 30.59 0.14 -3.15 16 13 C 0.09 2.70 6.86 71.98 0.49 3.19 16 14 O -0.59 -17.02 13.66 -148.98 -2.03 -19.05 16 15 C 0.16 6.84 6.90 86.44 0.60 7.44 16 16 N -0.63 -31.61 3.54 -715.51 -2.53 -34.14 16 17 C -0.23 -13.08 10.70 84.03 0.90 -12.18 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 20 N -0.94 -54.09 11.29 21.65 0.24 -53.84 16 21 Si 0.97 45.19 29.56 68.60 2.03 47.22 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.12 4.99 8.04 86.49 0.70 5.68 16 26 C -0.14 -2.16 6.31 30.59 0.19 -1.97 16 27 C 0.51 11.07 8.02 87.90 0.71 11.78 16 28 O -0.58 -17.36 17.59 -3.04 -0.05 -17.41 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.07 1.20 7.93 -2.39 -0.02 1.19 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 1.43 7.05 -2.39 -0.02 1.41 16 38 H 0.42 7.13 8.61 -92.70 -0.80 6.33 16 39 H 0.07 2.74 6.54 -2.39 -0.02 2.72 16 40 H 0.05 2.08 8.02 -2.39 -0.02 2.06 16 41 H 0.04 1.30 7.61 -2.39 -0.02 1.29 16 42 H 0.07 1.51 7.43 -2.39 -0.02 1.49 16 43 H 0.40 6.78 9.12 -74.05 -0.68 6.11 16 44 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 3.11 6.29 -2.39 -0.02 3.10 16 46 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 47 H 0.04 1.63 8.10 -2.38 -0.02 1.61 16 48 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.10 1.81 7.89 -2.39 -0.02 1.79 16 50 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -77.97 405.04 -0.49 -78.46 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.52 Total: 21.18 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 6.74 Total: 26.13 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -6.60 Total: -119.24 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -2.13 Total: -53.75 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -77.97 -0.49 -78.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485417820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.266 kcal (2) G-P(sol) polarization free energy of solvation -77.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds