Wall clock time and date at job start Tue Mar 31 2020 23:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46743 * 2 1 4 4 H 1.09001 * 110.32909 * 52.75267 * 3 2 1 5 5 C 1.54476 * 110.36957 * 174.99552 * 3 2 1 6 6 C 1.54509 * 104.06353 * 142.81136 * 5 3 2 7 7 C 1.54487 * 104.06018 * 0.02562 * 6 5 3 8 8 H 1.08998 * 110.37112 * 94.96491 * 7 6 5 9 9 C 1.50701 * 110.37102 * 217.19220 * 7 6 5 10 10 O 1.21282 * 119.99985 * 115.00289 * 9 7 6 11 11 N 1.34776 * 119.99920 * 294.99949 * 9 7 6 12 12 C 1.46499 * 120.00176 * 180.02562 * 11 9 7 13 13 H 1.09004 * 112.84743 * 23.79985 * 12 11 9 14 14 C 1.53775 * 113.61591 * 154.99751 * 12 11 9 15 15 C 1.53778 * 87.08150 * 89.11889 * 14 12 11 16 16 H 1.09001 * 113.60999 * 270.79684 * 15 14 12 17 17 N 1.46895 * 113.61739 * 139.98187 * 15 14 12 18 18 C 1.46905 * 111.00171 * 154.99771 * 17 15 14 19 19 C 1.50706 * 109.46943 * 180.02562 * 18 17 15 20 20 O 1.21292 * 120.00254 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99766 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99970 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99992 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99671 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99798 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00536 * 359.97438 * 24 22 21 27 27 H 1.48493 * 109.47326 * 270.00539 * 26 24 22 28 28 H 1.48506 * 109.46545 * 30.00289 * 26 24 22 29 29 H 1.48498 * 109.47210 * 150.00000 * 26 24 22 30 30 C 1.53774 * 87.08058 * 25.43152 * 15 14 12 31 31 O 1.44422 * 110.37227 * 290.37879 * 3 2 1 32 32 H 1.08994 * 109.47634 * 300.00056 * 1 2 3 33 33 H 1.09007 * 109.47315 * 60.00329 * 1 2 3 34 34 H 1.09005 * 109.46930 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.47634 * 239.99944 * 2 1 3 36 36 H 1.08998 * 109.47038 * 119.99745 * 2 1 3 37 37 H 1.09005 * 110.51265 * 24.16963 * 5 3 2 38 38 H 1.08994 * 110.51504 * 261.45682 * 5 3 2 39 39 H 1.09006 * 110.51349 * 241.36005 * 6 5 3 40 40 H 1.08993 * 110.62951 * 118.70238 * 6 5 3 41 41 H 0.97001 * 119.99760 * 359.97438 * 11 9 7 42 42 H 1.09005 * 113.61863 * 334.56782 * 14 12 11 43 43 H 1.09001 * 113.69421 * 203.67545 * 14 12 11 44 44 H 1.00907 * 111.00152 * 31.04299 * 17 15 14 45 45 H 1.08996 * 109.46646 * 60.00323 * 18 17 15 46 46 H 1.09000 * 109.46710 * 299.99944 * 18 17 15 47 47 H 0.97004 * 119.99528 * 0.02562 * 21 19 18 48 48 H 0.96996 * 120.00340 * 179.97438 * 25 24 22 49 49 H 1.09004 * 113.61524 * 89.11999 * 30 15 14 50 50 H 1.08998 * 113.61443 * 220.01845 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5828 2.0058 0.8136 5 6 3.5793 1.4688 0.1263 6 6 4.0106 2.6421 -0.7817 7 6 2.6807 3.1865 -1.3487 8 1 2.3233 4.0200 -0.7441 9 6 2.8586 3.6174 -2.7818 10 8 2.2695 3.0353 -3.6677 11 7 3.6725 4.6498 -3.0788 12 6 3.8452 5.0692 -4.4719 13 1 3.0053 4.7859 -5.1063 14 6 4.2638 6.5409 -4.6248 15 6 5.7198 6.0542 -4.5351 16 1 6.1043 6.0130 -3.5160 17 7 6.6288 6.7438 -5.4603 18 6 8.0115 6.7066 -4.9654 19 6 8.9126 7.4227 -5.9382 20 8 8.4487 7.9160 -6.9445 21 7 10.2340 7.5160 -5.6895 22 6 11.0538 8.1669 -6.5747 23 1 10.6408 8.6054 -7.4711 24 6 12.4162 8.2625 -6.3185 25 7 13.2020 8.8870 -7.1668 26 14 13.1305 7.5048 -4.7677 27 1 13.1064 8.5059 -3.6712 28 1 12.3213 6.3226 -4.3766 29 1 14.5314 7.0834 -5.0226 30 6 5.2167 4.6996 -5.0610 31 8 1.7630 2.0737 -1.2691 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 4.0078 0.5322 -0.2306 38 1 3.8747 1.6561 1.1586 39 1 4.6523 2.2856 -1.5875 40 1 4.5204 3.4103 -0.2003 41 1 4.1434 5.1156 -2.3702 42 1 3.9614 7.1702 -3.7877 43 1 4.0062 6.9713 -5.5925 44 1 6.3281 7.6933 -5.6222 45 1 8.3340 5.6702 -4.8661 46 1 8.0629 7.1979 -3.9938 47 1 10.6049 7.1218 -4.8845 48 1 14.1530 8.9541 -6.9878 49 1 5.2191 4.6252 -6.1485 50 1 5.6836 3.8423 -4.5761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490895568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:12 Heat of formation + Delta-G solvation = -95.802586 kcal Electronic energy + Delta-G solvation = -28869.011866 eV Core-core repulsion = 24703.780863 eV Total energy + Delta-G solvation = -4165.231003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.90718 -39.80146 -38.56782 -38.00272 -34.71161 -34.11041 -33.90606 -32.95972 -32.17979 -31.65217 -29.15105 -27.10566 -25.87366 -25.13547 -24.14066 -22.80866 -22.39283 -21.50106 -21.01896 -19.64382 -19.30559 -18.33586 -17.75170 -17.08281 -16.76425 -16.31909 -15.93897 -15.49041 -15.38026 -14.96026 -14.82034 -14.62753 -14.41695 -14.16892 -14.04094 -13.82313 -13.61022 -13.53117 -13.20672 -12.73686 -12.58691 -12.39526 -12.26884 -12.21439 -12.13995 -12.00849 -11.91334 -11.52942 -11.44046 -11.27468 -11.19410 -11.11885 -10.71320 -10.64348 -10.59278 -10.40804 -9.99248 -9.92870 -9.59372 -9.33487 -8.59605 -8.22806 -8.17083 -6.32806 -3.84325 2.25367 2.47794 3.00368 3.03993 3.12866 3.50753 3.71986 3.94386 4.07082 4.08199 4.12687 4.30600 4.31299 4.34250 4.42088 4.57670 4.64651 4.72802 4.77060 4.81342 4.84137 4.98092 5.00949 5.13735 5.19722 5.23341 5.32686 5.34106 5.41292 5.51770 5.53627 5.54185 5.58151 5.67344 5.69402 5.73014 5.77119 5.88488 5.90189 5.94596 6.01164 6.26801 6.38059 7.11279 7.14595 7.54066 7.56752 7.89354 8.12829 8.57890 8.93231 9.40564 9.80756 10.80342 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019102 B = 0.001767 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.483343 B =15838.444336 C =17006.573433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.070 3.930 4 H 0.072 0.928 5 C -0.150 4.150 6 C -0.146 4.146 7 C 0.058 3.942 8 H 0.095 0.905 9 C 0.521 3.479 10 O -0.515 6.515 11 N -0.710 5.710 12 C 0.119 3.881 13 H 0.106 0.894 14 C -0.147 4.147 15 C 0.059 3.941 16 H 0.069 0.931 17 N -0.655 5.655 18 C 0.048 3.952 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.270 1.270 29 H -0.276 1.276 30 C -0.135 4.135 31 O -0.338 6.338 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.400 0.600 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.352 0.648 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.102 0.898 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.489 -14.111 21.507 33.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.090 0.910 5 C -0.188 4.188 6 C -0.184 4.184 7 C -0.004 4.004 8 H 0.112 0.888 9 C 0.305 3.695 10 O -0.389 6.389 11 N -0.363 5.363 12 C 0.013 3.987 13 H 0.124 0.876 14 C -0.186 4.186 15 C -0.052 4.052 16 H 0.087 0.913 17 N -0.288 5.288 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.201 1.201 30 C -0.175 4.175 31 O -0.256 6.256 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.234 0.766 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.173 0.827 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.120 0.880 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.107 -14.739 19.526 32.973 hybrid contribution 1.319 0.426 2.488 2.848 sum -20.787 -14.313 22.014 33.490 Atomic orbital electron populations 1.21745 0.95099 1.01766 1.02352 1.21588 0.96948 0.94046 1.02910 1.23159 0.94144 0.94836 0.86608 0.91008 1.23004 0.95877 0.99360 1.00533 1.22924 0.96555 0.98774 1.00153 1.22824 0.91168 0.92284 0.94075 0.88782 1.20192 0.78980 0.79996 0.90291 1.90747 1.46123 1.53420 1.48632 1.45598 1.47625 1.34177 1.08886 1.21778 0.99194 0.95334 0.82348 0.87577 1.23610 0.95676 0.95543 1.03729 1.23112 0.91351 0.96103 0.94598 0.91341 1.60204 1.00254 1.23181 1.45134 1.21768 0.89765 1.01120 0.95872 1.19727 0.82737 0.85473 0.88585 1.90568 1.74624 1.50624 1.28797 1.42212 1.06919 1.51522 1.22360 1.19440 0.88715 1.31029 1.04255 0.86270 1.25040 0.95857 0.97417 0.97833 1.69620 1.05235 1.41627 1.35608 0.86668 0.79776 0.79554 0.83361 1.19686 1.19508 1.20149 1.23551 0.94485 0.96927 1.02505 1.89304 1.56617 1.42412 1.37272 0.92877 0.91833 0.92616 0.90818 0.90552 0.90082 0.90029 0.89934 0.89478 0.76596 0.90996 0.87602 0.82683 0.89570 0.93840 0.79727 0.91605 0.87954 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.85 37.16 0.37 -0.58 16 2 C -0.12 -0.71 5.56 -26.73 -0.15 -0.86 16 3 C 0.07 0.46 3.25 -25.95 -0.08 0.37 16 4 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 5 C -0.15 -0.76 6.63 -25.16 -0.17 -0.93 16 6 C -0.15 -0.80 6.61 -25.16 -0.17 -0.97 16 7 C 0.06 0.45 3.71 -27.10 -0.10 0.34 16 8 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 9 C 0.52 5.41 7.08 -10.99 -0.08 5.33 16 10 O -0.52 -7.86 16.15 -13.67 -0.22 -8.08 16 11 N -0.71 -5.62 5.25 -53.02 -0.28 -5.90 16 12 C 0.12 1.12 4.32 -67.12 -0.29 0.83 16 13 H 0.11 1.17 7.46 -51.93 -0.39 0.79 16 14 C -0.15 -1.26 7.40 -25.92 -0.19 -1.46 16 15 C 0.06 0.61 4.02 -66.91 -0.27 0.34 16 16 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 17 N -0.66 -9.50 6.18 -107.13 -0.66 -10.16 16 18 C 0.05 0.76 6.01 -4.97 -0.03 0.73 16 19 C 0.45 10.04 7.82 -10.98 -0.09 9.95 16 20 O -0.56 -15.02 15.78 5.55 0.09 -14.93 16 21 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16 22 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 23 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.63 13.96 55.50 0.77 -24.85 16 26 Si 0.88 19.14 27.74 -169.99 -4.72 14.43 16 27 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 28 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 30 C -0.14 -1.45 7.68 -25.93 -0.20 -1.64 16 31 O -0.34 -3.42 10.39 -54.46 -0.57 -3.98 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.51 8.01 -51.93 -0.42 0.09 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.40 2.03 8.70 -40.82 -0.36 1.68 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.35 5.27 8.24 -39.29 -0.32 4.95 16 45 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.04 0.59 8.13 -51.93 -0.42 0.16 16 47 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 48 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 408.31 15.07 6.15 6.15 Total: -1.00 -36.02 408.31 -9.59 -45.62 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -8.42 Total: 11.94 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.69 Total: 3.74 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.22 Total: -54.88 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.70 Total: -27.00 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.72 Total: 14.43 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.02 -9.59 -45.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490895568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.187 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds