Wall clock time and date at job start Tue Mar 31 2020 23:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46934 * 2 1 4 4 H 1.09001 * 109.89726 * 54.47800 * 3 2 1 5 5 C 1.54382 * 109.82719 * 175.41077 * 3 2 1 6 6 C 1.55419 * 102.30834 * 140.79641 * 5 3 2 7 7 C 1.54944 * 100.89221 * 325.99058 * 6 5 3 8 8 H 1.09000 * 110.30548 * 277.35753 * 7 6 5 9 9 C 1.50698 * 110.31022 * 155.28737 * 7 6 5 10 10 O 1.21286 * 120.00114 * 246.38655 * 9 7 6 11 11 N 1.34781 * 120.00018 * 66.38934 * 9 7 6 12 12 C 1.46503 * 119.99994 * 180.02562 * 11 9 7 13 13 H 1.08996 * 112.84818 * 23.80426 * 12 11 9 14 14 C 1.53772 * 113.61377 * 154.99878 * 12 11 9 15 15 C 1.53775 * 87.08383 * 89.11452 * 14 12 11 16 16 H 1.08995 * 113.61687 * 270.79831 * 15 14 12 17 17 N 1.46901 * 113.61537 * 139.97761 * 15 14 12 18 18 C 1.46905 * 110.99870 * 155.00237 * 17 15 14 19 19 C 1.50697 * 109.47066 * 180.02562 * 18 17 15 20 20 O 1.21297 * 120.00124 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00196 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00290 * 180.02562 * 21 19 18 23 23 H 1.07990 * 119.99768 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99812 * 180.02562 * 22 21 19 25 25 N 1.31408 * 119.99864 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99403 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47490 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46718 * 120.00461 * 26 24 22 29 29 H 1.48503 * 109.46960 * 239.99492 * 26 24 22 30 30 C 1.53780 * 113.61397 * 252.49608 * 12 11 9 31 31 O 1.43238 * 109.82714 * 293.53916 * 3 2 1 32 32 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47098 * 300.00250 * 1 2 3 34 34 H 1.08999 * 109.46848 * 60.00325 * 1 2 3 35 35 H 1.08998 * 109.47471 * 239.99376 * 2 1 3 36 36 H 1.09001 * 109.46945 * 119.99145 * 2 1 3 37 37 H 1.09004 * 110.84651 * 259.05473 * 5 3 2 38 38 H 1.08996 * 110.85398 * 22.47455 * 5 3 2 39 39 H 1.08992 * 111.21072 * 208.05726 * 6 5 3 40 40 H 1.09006 * 111.08347 * 83.86529 * 6 5 3 41 41 H 0.96998 * 120.00079 * 359.97438 * 11 9 7 42 42 H 1.09006 * 113.61854 * 334.57010 * 14 12 11 43 43 H 1.09004 * 113.61336 * 203.66603 * 14 12 11 44 44 H 1.00901 * 111.00067 * 278.95412 * 17 15 14 45 45 H 1.09001 * 109.46798 * 300.00327 * 18 17 15 46 46 H 1.08998 * 109.46961 * 60.00043 * 18 17 15 47 47 H 0.97009 * 119.99629 * 359.97438 * 21 19 18 48 48 H 0.97004 * 119.99642 * 179.97438 * 25 24 22 49 49 H 1.08994 * 113.61383 * 156.33213 * 30 12 11 50 50 H 1.09003 * 113.60927 * 25.43163 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6022 1.9908 0.8342 5 6 3.5794 1.4538 0.1162 6 6 3.9760 2.6068 -0.8475 7 6 2.8863 2.4635 -1.9396 8 1 3.1676 1.6913 -2.6557 9 6 2.6766 3.7785 -2.6451 10 8 1.6228 4.3676 -2.5293 11 7 3.6602 4.3000 -3.4048 12 6 3.4567 5.5787 -4.0902 13 1 2.6953 6.1971 -3.6150 14 6 4.7634 6.3320 -4.3897 15 6 4.8085 5.5645 -5.7214 16 1 5.3309 4.6100 -5.6578 17 7 5.2525 6.3831 -6.8576 18 6 5.8366 5.5453 -7.9136 19 6 6.2800 6.4179 -9.0594 20 8 6.1251 7.6196 -9.0019 21 7 6.8486 5.8632 -10.1481 22 6 7.2525 6.6571 -11.1904 23 1 7.1146 7.7270 -11.1391 24 6 7.8382 6.0851 -12.3131 25 7 8.0055 4.7832 -12.3756 26 14 8.3878 7.1668 -13.7333 27 1 8.0903 8.5870 -13.4179 28 1 9.8486 7.0025 -13.9442 29 1 7.6621 6.7706 -14.9669 30 6 3.2797 5.4408 -5.6116 31 8 1.6945 2.0800 -1.2353 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 3.8897 1.6766 1.1371 38 1 4.0006 0.5053 -0.2172 39 1 4.9714 2.4490 -1.2626 40 1 3.9087 3.5743 -0.3500 41 1 4.5032 3.8291 -3.4972 42 1 5.5787 6.0786 -3.7119 43 1 4.6299 7.4071 -4.5096 44 1 4.4943 6.9429 -7.2181 45 1 6.6954 5.0050 -7.5153 46 1 5.0909 4.8329 -8.2663 47 1 6.9728 4.9022 -10.1940 48 1 8.4141 4.3838 -13.1595 49 1 2.7405 6.2722 -6.0655 50 1 2.8970 4.4679 -5.9202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490895577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:24 Heat of formation + Delta-G solvation = -104.020704 kcal Electronic energy + Delta-G solvation = -28729.425966 eV Core-core repulsion = 24563.838598 eV Total energy + Delta-G solvation = -4165.587367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.89618 -39.81904 -38.46345 -37.88116 -34.62881 -34.02182 -33.84502 -32.91128 -32.13300 -31.19910 -29.16048 -26.87157 -25.80555 -25.07389 -24.24127 -22.87328 -22.41020 -21.67988 -20.65384 -19.78097 -19.12849 -18.16084 -17.88765 -17.02947 -16.48982 -16.13965 -16.02958 -15.41497 -15.04923 -14.96512 -14.61113 -14.56266 -14.50634 -14.07831 -13.90157 -13.74434 -13.58709 -13.38589 -13.07211 -12.81347 -12.59045 -12.47253 -12.34598 -12.18214 -11.94466 -11.82778 -11.60791 -11.48227 -11.43837 -11.33542 -11.17169 -11.08829 -10.84672 -10.50095 -10.34970 -10.32451 -10.22901 -9.71420 -9.53122 -9.29950 -8.46232 -8.03641 -7.96292 -6.43055 -3.83752 2.27757 2.54024 3.15649 3.26352 3.33778 3.46839 3.86681 3.89622 4.09013 4.15142 4.20770 4.29111 4.40996 4.49249 4.54165 4.57392 4.69411 4.75764 4.82520 4.91069 4.93328 4.97006 5.15638 5.16429 5.24142 5.25853 5.31066 5.40621 5.45583 5.51310 5.56545 5.63863 5.69498 5.74528 5.77637 5.79158 5.85254 5.93997 5.95346 6.00015 6.23730 6.35724 6.52266 7.18904 7.24246 7.54427 7.64287 7.94048 8.05561 8.60010 9.16919 9.53151 10.04526 10.74761 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.001577 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.021637 B =17756.041212 C =18257.307895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.083 0.917 5 C -0.150 4.150 6 C -0.146 4.146 7 C 0.064 3.936 8 H 0.097 0.903 9 C 0.515 3.485 10 O -0.518 6.518 11 N -0.709 5.709 12 C 0.120 3.880 13 H 0.104 0.896 14 C -0.131 4.131 15 C 0.068 3.932 16 H 0.093 0.907 17 N -0.657 5.657 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 C -0.181 4.181 31 O -0.345 6.345 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.401 0.599 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.353 0.647 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.094 0.906 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.223 -11.965 26.159 29.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.101 0.899 5 C -0.188 4.188 6 C -0.184 4.184 7 C 0.003 3.997 8 H 0.114 0.886 9 C 0.300 3.700 10 O -0.392 6.392 11 N -0.362 5.362 12 C 0.014 3.986 13 H 0.122 0.878 14 C -0.170 4.170 15 C -0.043 4.043 16 H 0.111 0.889 17 N -0.288 5.288 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.468 6.468 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 C -0.221 4.221 31 O -0.263 6.263 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.235 0.765 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.173 0.827 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.113 0.887 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.631 -10.641 26.325 29.677 hybrid contribution 0.275 -0.975 -1.234 1.597 sum -8.356 -11.616 25.091 28.885 Atomic orbital electron populations 1.21715 0.95100 1.01477 1.02532 1.21909 0.97250 0.95401 1.02443 1.22904 0.94194 0.93727 0.87336 0.89941 1.23215 0.95277 0.99224 1.01045 1.23267 0.98816 1.00390 0.95889 1.22808 0.86842 0.94526 0.95562 0.88585 1.20457 0.84026 0.86631 0.78913 1.90736 1.25855 1.61205 1.61438 1.45609 1.17537 1.23318 1.49730 1.21770 0.99522 0.84804 0.92507 0.87830 1.23465 0.95869 1.01120 0.96587 1.23099 0.92963 0.96177 0.92088 0.88868 1.60024 1.37457 1.23130 1.08176 1.21712 0.99379 0.94887 0.92282 1.19838 0.84473 0.88915 0.84246 1.90527 1.60156 1.14987 1.81081 1.41876 1.53117 1.09963 1.15112 1.19765 1.35919 0.92969 0.94223 0.87849 1.25264 0.97460 0.96133 0.99105 1.69620 1.44443 1.09645 1.30633 0.85796 0.78146 0.80056 0.80329 1.19197 1.20746 1.20774 1.24203 0.98497 1.03081 0.96337 1.88577 1.27165 1.77725 1.32851 0.92854 0.92834 0.91819 0.91396 0.90942 0.89522 0.89879 0.88837 0.89653 0.76488 0.90865 0.88006 0.82651 0.89696 0.93841 0.77487 0.91935 0.88734 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.82 37.16 0.37 -0.64 16 2 C -0.13 -0.76 5.50 -26.73 -0.15 -0.91 16 3 C 0.08 0.52 3.52 -26.00 -0.09 0.43 16 4 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -0.66 6.55 -24.72 -0.16 -0.82 16 6 C -0.15 -0.74 6.57 -24.42 -0.16 -0.90 16 7 C 0.06 0.51 3.86 -26.86 -0.10 0.40 16 8 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 9 C 0.51 5.49 7.18 -10.98 -0.08 5.41 16 10 O -0.52 -8.02 16.15 -13.79 -0.22 -8.24 16 11 N -0.71 -5.88 5.26 -53.02 -0.28 -6.16 16 12 C 0.12 1.17 4.32 -67.12 -0.29 0.88 16 13 H 0.10 1.17 7.46 -51.93 -0.39 0.78 16 14 C -0.13 -1.26 7.63 -25.93 -0.20 -1.46 16 15 C 0.07 0.75 4.06 -66.90 -0.27 0.48 16 16 H 0.09 0.92 7.86 -51.93 -0.41 0.51 16 17 N -0.66 -10.09 6.24 -107.13 -0.67 -10.76 16 18 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 19 C 0.44 10.29 7.82 -10.99 -0.09 10.20 16 20 O -0.58 -15.79 15.78 5.54 0.09 -15.70 16 21 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 22 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 23 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 26 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 C -0.18 -1.91 7.49 -25.92 -0.19 -2.10 16 31 O -0.34 -3.54 9.88 -54.57 -0.54 -4.08 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.28 7.85 -51.93 -0.41 -0.13 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.50 8.05 -51.93 -0.42 0.09 16 41 H 0.40 2.22 8.70 -40.82 -0.36 1.87 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.35 5.69 7.90 -39.29 -0.31 5.38 16 45 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.09 1.03 7.82 -51.93 -0.41 0.62 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 410.76 15.07 6.19 6.19 Total: -1.00 -34.85 410.76 -9.91 -44.76 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -8.43 Total: 12.19 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.69 Total: 3.80 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.28 Total: -54.88 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.67 Total: -28.02 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.85 -9.91 -44.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490895577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.260 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds