Wall clock time and date at job start Tue Mar 31 2020 23:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46934 * 2 1 4 4 H 1.09001 * 109.89726 * 54.47800 * 3 2 1 5 5 C 1.54382 * 109.82719 * 175.41077 * 3 2 1 6 6 C 1.55419 * 102.30834 * 140.79641 * 5 3 2 7 7 C 1.54944 * 100.89221 * 325.99058 * 6 5 3 8 8 H 1.09000 * 110.30548 * 277.35753 * 7 6 5 9 9 C 1.50698 * 110.31022 * 155.28737 * 7 6 5 10 10 O 1.21286 * 120.00114 * 246.38655 * 9 7 6 11 11 N 1.34781 * 120.00018 * 66.38934 * 9 7 6 12 12 C 1.46503 * 119.99994 * 180.02562 * 11 9 7 13 13 H 1.08996 * 112.84818 * 23.80426 * 12 11 9 14 14 C 1.53772 * 113.61377 * 154.99878 * 12 11 9 15 15 C 1.53775 * 87.08383 * 89.11452 * 14 12 11 16 16 H 1.08995 * 113.61687 * 270.79831 * 15 14 12 17 17 N 1.46901 * 113.61537 * 139.97761 * 15 14 12 18 18 C 1.46905 * 110.99870 * 155.00237 * 17 15 14 19 19 C 1.50697 * 109.47066 * 180.02562 * 18 17 15 20 20 O 1.21297 * 120.00124 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00196 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00290 * 180.02562 * 21 19 18 23 23 H 1.07990 * 119.99768 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99812 * 180.02562 * 22 21 19 25 25 N 1.31408 * 119.99864 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99403 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47490 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46718 * 120.00461 * 26 24 22 29 29 H 1.48503 * 109.46960 * 239.99492 * 26 24 22 30 30 C 1.53780 * 113.61397 * 252.49608 * 12 11 9 31 31 O 1.43238 * 109.82714 * 293.53916 * 3 2 1 32 32 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47098 * 300.00250 * 1 2 3 34 34 H 1.08999 * 109.46848 * 60.00325 * 1 2 3 35 35 H 1.08998 * 109.47471 * 239.99376 * 2 1 3 36 36 H 1.09001 * 109.46945 * 119.99145 * 2 1 3 37 37 H 1.09004 * 110.84651 * 259.05473 * 5 3 2 38 38 H 1.08996 * 110.85398 * 22.47455 * 5 3 2 39 39 H 1.08992 * 111.21072 * 208.05726 * 6 5 3 40 40 H 1.09006 * 111.08347 * 83.86529 * 6 5 3 41 41 H 0.96998 * 120.00079 * 359.97438 * 11 9 7 42 42 H 1.09006 * 113.61854 * 334.57010 * 14 12 11 43 43 H 1.09004 * 113.61336 * 203.66603 * 14 12 11 44 44 H 1.00901 * 111.00067 * 278.95412 * 17 15 14 45 45 H 1.09001 * 109.46798 * 300.00327 * 18 17 15 46 46 H 1.08998 * 109.46961 * 60.00043 * 18 17 15 47 47 H 0.97009 * 119.99629 * 359.97438 * 21 19 18 48 48 H 0.97004 * 119.99642 * 179.97438 * 25 24 22 49 49 H 1.08994 * 113.61383 * 156.33213 * 30 12 11 50 50 H 1.09003 * 113.60927 * 25.43163 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6022 1.9908 0.8342 5 6 3.5794 1.4538 0.1162 6 6 3.9760 2.6068 -0.8475 7 6 2.8863 2.4635 -1.9396 8 1 3.1676 1.6913 -2.6557 9 6 2.6766 3.7785 -2.6451 10 8 1.6228 4.3676 -2.5293 11 7 3.6602 4.3000 -3.4048 12 6 3.4567 5.5787 -4.0902 13 1 2.6953 6.1971 -3.6150 14 6 4.7634 6.3320 -4.3897 15 6 4.8085 5.5645 -5.7214 16 1 5.3309 4.6100 -5.6578 17 7 5.2525 6.3831 -6.8576 18 6 5.8366 5.5453 -7.9136 19 6 6.2800 6.4179 -9.0594 20 8 6.1251 7.6196 -9.0019 21 7 6.8486 5.8632 -10.1481 22 6 7.2525 6.6571 -11.1904 23 1 7.1146 7.7270 -11.1391 24 6 7.8382 6.0851 -12.3131 25 7 8.0055 4.7832 -12.3756 26 14 8.3878 7.1668 -13.7333 27 1 8.0903 8.5870 -13.4179 28 1 9.8486 7.0025 -13.9442 29 1 7.6621 6.7706 -14.9669 30 6 3.2797 5.4408 -5.6116 31 8 1.6945 2.0800 -1.2353 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 3.8897 1.6766 1.1371 38 1 4.0006 0.5053 -0.2172 39 1 4.9714 2.4490 -1.2626 40 1 3.9087 3.5743 -0.3500 41 1 4.5032 3.8291 -3.4972 42 1 5.5787 6.0786 -3.7119 43 1 4.6299 7.4071 -4.5096 44 1 4.4943 6.9429 -7.2181 45 1 6.6954 5.0050 -7.5153 46 1 5.0909 4.8329 -8.2663 47 1 6.9728 4.9022 -10.1940 48 1 8.4141 4.3838 -13.1595 49 1 2.7405 6.2722 -6.0655 50 1 2.8970 4.4679 -5.9202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490895577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:23 Heat of formation + Delta-G solvation = -130.188280 kcal Electronic energy + Delta-G solvation = -28730.560677 eV Core-core repulsion = 24563.838598 eV Total energy + Delta-G solvation = -4166.722079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.63132 -40.61127 -39.98804 -39.02091 -36.12598 -35.43511 -34.53652 -33.78024 -33.23049 -32.78490 -29.75561 -28.37426 -26.64583 -26.25376 -25.40210 -23.86528 -22.86654 -22.28513 -21.32742 -21.12271 -20.45600 -19.87615 -18.80527 -17.82625 -17.62411 -17.08807 -16.90850 -16.72810 -16.34944 -16.09142 -15.90077 -15.64052 -15.46340 -15.20778 -15.03913 -14.49279 -14.32196 -14.26834 -14.03232 -13.90398 -13.53931 -13.48543 -13.44423 -13.12122 -13.05349 -12.83938 -12.77840 -12.60299 -12.41408 -12.39820 -12.11294 -11.89019 -11.80141 -11.76186 -11.59696 -11.51164 -11.37294 -11.03031 -10.41116 -10.32498 -10.12187 -10.00868 -9.22928 -8.46740 -5.95212 1.36889 1.42446 1.49015 1.56484 1.84782 2.06155 2.29710 2.92806 2.96459 3.20826 3.41772 3.44753 3.60937 3.64490 3.72603 3.76837 3.96916 4.03186 4.08060 4.10868 4.22265 4.32766 4.33736 4.46035 4.52532 4.54212 4.57942 4.61791 4.80983 4.82572 4.84520 4.86854 4.95767 4.96950 4.98262 5.03531 5.07855 5.13370 5.13852 5.33180 5.41229 5.41604 5.52617 5.94160 5.99192 6.17498 6.40353 6.52294 6.60822 7.13306 7.19855 7.57099 8.12642 8.70793 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.001577 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.021637 B =17756.041212 C =18257.307895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.066 3.934 4 H 0.073 0.927 5 C -0.141 4.141 6 C -0.139 4.139 7 C 0.061 3.939 8 H 0.119 0.881 9 C 0.511 3.489 10 O -0.577 6.577 11 N -0.691 5.691 12 C 0.125 3.875 13 H 0.085 0.915 14 C -0.120 4.120 15 C 0.070 3.930 16 H 0.116 0.884 17 N -0.671 5.671 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.271 1.271 30 C -0.178 4.178 31 O -0.382 6.382 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.073 0.927 41 H 0.418 0.582 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.345 0.655 45 H 0.109 0.891 46 H 0.065 0.935 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.086 0.914 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 -13.875 27.034 31.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C 0.009 3.991 4 H 0.091 0.909 5 C -0.179 4.179 6 C -0.177 4.177 7 C 0.001 3.999 8 H 0.136 0.864 9 C 0.298 3.702 10 O -0.455 6.455 11 N -0.345 5.345 12 C 0.019 3.981 13 H 0.103 0.897 14 C -0.159 4.159 15 C -0.040 4.040 16 H 0.134 0.866 17 N -0.301 5.301 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.197 1.197 30 C -0.219 4.219 31 O -0.301 6.301 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.256 0.744 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.165 0.835 45 H 0.127 0.873 46 H 0.083 0.917 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.105 0.895 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.843 -12.603 27.215 30.762 hybrid contribution -0.329 -0.368 -1.459 1.540 sum -7.172 -12.971 25.756 29.716 Atomic orbital electron populations 1.21720 0.96260 1.01703 1.01277 1.21907 0.96231 0.94983 1.03467 1.23086 0.96263 0.93840 0.85922 0.90884 1.23220 0.93067 0.99760 1.01813 1.23304 0.99207 1.00197 0.94977 1.23000 0.87212 0.93156 0.96573 0.86362 1.21107 0.83316 0.87280 0.78484 1.90710 1.28238 1.62988 1.63564 1.45453 1.17863 1.22613 1.48552 1.21589 0.99268 0.85352 0.91920 0.89701 1.23368 0.96127 1.00445 0.95962 1.23263 0.93113 0.96816 0.90855 0.86610 1.60062 1.37747 1.23865 1.08473 1.21591 1.00810 0.93919 0.90384 1.20985 0.82607 0.89146 0.84936 1.90496 1.61334 1.17307 1.82031 1.41941 1.53790 1.09960 1.15366 1.19706 1.38163 0.92374 0.96174 0.90418 1.26017 0.96829 0.97477 1.00859 1.69672 1.44327 1.10576 1.31483 0.84881 0.78202 0.77926 0.77385 1.19881 1.19549 1.19658 1.24158 0.98239 1.02741 0.96764 1.88551 1.29055 1.78256 1.34254 0.91849 0.92830 0.94339 0.91294 0.88785 0.88079 0.88124 0.85780 0.90784 0.74389 0.88877 0.88919 0.83543 0.87337 0.91729 0.76925 0.91306 0.89503 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.82 71.98 0.71 -1.30 16 2 C -0.13 -1.30 5.50 30.60 0.17 -1.13 16 3 C 0.07 0.83 3.52 31.07 0.11 0.94 16 4 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.14 -0.84 6.55 31.90 0.21 -0.63 16 6 C -0.14 -1.03 6.57 32.09 0.21 -0.82 16 7 C 0.06 0.88 3.86 30.51 0.12 1.00 16 8 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 9 C 0.51 10.62 7.18 87.66 0.63 11.24 16 10 O -0.58 -18.50 16.15 15.44 0.25 -18.25 16 11 N -0.69 -10.24 5.26 -440.04 -2.31 -12.55 16 12 C 0.13 2.33 4.32 45.51 0.20 2.52 16 13 H 0.08 1.96 7.46 -2.39 -0.02 1.95 16 14 C -0.12 -2.08 7.63 31.12 0.24 -1.85 16 15 C 0.07 1.38 4.06 45.44 0.18 1.57 16 16 H 0.12 1.82 7.86 -2.39 -0.02 1.80 16 17 N -0.67 -19.67 6.24 -492.86 -3.08 -22.75 16 18 C 0.07 2.11 6.01 85.55 0.51 2.62 16 19 C 0.44 20.40 7.82 87.66 0.69 21.08 16 20 O -0.63 -34.51 15.78 -3.08 -0.05 -34.56 16 21 N -0.57 -29.07 5.29 -306.99 -1.62 -30.69 16 22 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 23 H 0.08 4.72 7.16 -2.92 -0.02 4.70 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 26 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 30 C -0.18 -3.60 7.49 31.12 0.23 -3.36 16 31 O -0.38 -7.82 9.88 -130.49 -1.29 -9.11 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.04 0.69 7.88 -2.39 -0.02 0.67 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 38 H 0.10 0.28 7.85 -2.39 -0.02 0.26 16 39 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.07 0.74 8.05 -2.38 -0.02 0.72 16 41 H 0.42 3.24 8.70 -92.71 -0.81 2.44 16 42 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.34 11.04 7.90 -89.69 -0.71 10.34 16 45 H 0.11 3.04 8.13 -2.39 -0.02 3.02 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.40 18.96 7.90 -92.70 -0.73 18.23 16 48 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 49 H 0.09 1.89 7.82 -2.39 -0.02 1.87 16 50 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.58 410.76 -1.59 -80.18 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -1.28 Total: 38.22 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 5.48 Total: 13.57 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -6.73 Total: -114.83 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -1.09 Total: -61.92 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -78.58 -1.59 -80.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490895577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.013 kcal (2) G-P(sol) polarization free energy of solvation -78.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds