Wall clock time and date at job start Tue Mar 31 2020 23:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46749 * 2 1 4 4 C 1.52997 * 109.47008 * 120.00046 * 2 1 3 5 5 C 1.50697 * 109.47152 * 180.65170 * 4 2 1 6 6 O 1.21285 * 119.99797 * 354.41944 * 5 4 2 7 7 N 1.34775 * 120.00409 * 174.42069 * 5 4 2 8 8 C 1.47022 * 125.64415 * 0.02562 * 7 5 4 9 9 C 1.54326 * 107.26921 * 178.89413 * 8 7 5 10 10 C 1.55155 * 102.94100 * 337.80821 * 9 8 7 11 11 H 1.09000 * 111.00177 * 277.38468 * 10 9 8 12 12 N 1.46908 * 111.00293 * 153.57634 * 10 9 8 13 13 C 1.46899 * 110.99830 * 86.45049 * 12 10 9 14 14 C 1.50703 * 109.46979 * 179.97438 * 13 12 10 15 15 O 1.21298 * 119.99802 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00180 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00085 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00023 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00053 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00086 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47506 * 59.99877 * 21 19 17 23 23 H 1.48499 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47217 * 299.99742 * 21 19 17 25 25 C 1.47424 * 125.65114 * 179.97438 * 7 5 4 26 26 C 1.53000 * 109.47055 * 240.00385 * 2 1 3 27 27 C 1.52994 * 117.49851 * 128.62356 * 26 2 1 28 28 C 1.52991 * 117.50303 * 59.99685 * 26 2 1 29 29 H 1.08999 * 109.47413 * 304.79736 * 1 2 3 30 30 H 1.08999 * 109.47113 * 64.79930 * 1 2 3 31 31 H 1.08998 * 109.47225 * 184.79813 * 1 2 3 32 32 H 0.96702 * 113.99953 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47266 * 60.64500 * 4 2 1 34 34 H 1.09002 * 109.46754 * 300.64952 * 4 2 1 35 35 H 1.08999 * 109.88335 * 59.48072 * 8 7 5 36 36 H 1.09004 * 109.88275 * 298.30953 * 8 7 5 37 37 H 1.09002 * 110.72108 * 219.44591 * 9 8 7 38 38 H 1.09003 * 110.71756 * 96.17109 * 9 8 7 39 39 H 1.00900 * 110.99847 * 210.40794 * 12 10 9 40 40 H 1.08995 * 109.47710 * 300.00102 * 13 12 10 41 41 H 1.08996 * 109.47348 * 60.00368 * 13 12 10 42 42 H 0.97000 * 119.99780 * 359.97438 * 16 14 13 43 43 H 0.96992 * 120.00158 * 180.02562 * 20 19 17 44 44 H 1.08993 * 110.36876 * 85.33438 * 25 7 5 45 45 H 1.09005 * 110.36334 * 323.00755 * 25 7 5 46 46 H 1.08999 * 115.54258 * 274.32928 * 26 2 1 47 47 H 1.09001 * 117.50264 * 359.97438 * 27 26 2 48 48 H 1.08996 * 117.49775 * 145.01675 * 27 26 2 49 49 H 1.08998 * 117.50213 * 214.97861 * 28 26 2 50 50 H 1.09002 * 117.49880 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5469 -0.7073 1.2574 6 8 4.1543 -0.2638 0.3059 7 7 4.2196 -1.1876 2.3219 8 6 3.6120 -1.7521 3.5358 9 6 4.7646 -2.1944 4.4619 10 6 5.9514 -2.3729 3.4786 11 1 5.9134 -3.3482 2.9934 12 7 7.2364 -2.1783 4.1634 13 6 7.7003 -3.4294 4.7778 14 6 9.0182 -3.1913 5.4687 15 8 9.5214 -2.0877 5.4514 16 7 9.6379 -4.2045 6.1058 17 6 10.8367 -3.9877 6.7347 18 1 11.2843 -3.0049 6.7201 19 6 11.4753 -5.0322 7.3920 20 7 10.9304 -6.2279 7.4103 21 14 13.1082 -4.7366 8.2496 22 1 12.9349 -3.7032 9.3018 23 1 13.5776 -6.0015 8.8699 24 1 14.1107 -4.2703 7.2582 25 6 5.6864 -1.2350 2.4614 26 6 2.0400 -0.7212 -1.2493 27 6 3.0741 0.0053 -2.1116 28 6 1.6357 -0.1495 -2.6096 29 1 -0.3634 0.5864 0.8439 30 1 -0.3633 0.4376 -0.9298 31 1 -0.3633 -1.0240 0.0860 32 1 2.9703 1.4237 0.0004 33 1 1.6861 -1.7522 1.2435 34 1 1.6671 -0.2141 2.1391 35 1 2.9946 -2.6120 3.2760 36 1 3.0062 -0.9949 4.0337 37 1 4.5249 -3.1378 4.9524 38 1 4.9863 -1.4213 5.1977 39 1 7.9300 -1.8066 3.5319 40 1 6.9646 -3.7714 5.5057 41 1 7.8272 -4.1881 4.0056 42 1 9.2354 -5.0869 6.1199 43 1 11.3760 -6.9569 7.8694 44 1 6.0617 -0.2869 2.8465 45 1 6.1513 -1.4669 1.5032 46 1 2.1267 -1.8044 -1.1642 47 1 3.3909 0.9971 -1.7892 48 1 3.8415 -0.6000 -2.5941 49 1 1.4569 -0.8565 -3.4197 50 1 1.0067 0.7407 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491721086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:56 Heat of formation + Delta-G solvation = -90.610800 kcal Electronic energy + Delta-G solvation = -29477.374830 eV Core-core repulsion = 25312.368959 eV Total energy + Delta-G solvation = -4165.005870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.82529 -39.30343 -38.29254 -37.40880 -35.20544 -34.83018 -33.83980 -32.58974 -31.29025 -30.76801 -29.50574 -28.16901 -26.05655 -24.18329 -23.71171 -23.21307 -22.36649 -20.72654 -20.32657 -19.55065 -19.21599 -17.92960 -17.55543 -17.06915 -16.87449 -16.40685 -15.89490 -15.58325 -15.29037 -15.09475 -14.60546 -14.41523 -14.03585 -13.88671 -13.68631 -13.54600 -13.21760 -13.07964 -13.03737 -12.74876 -12.67666 -12.43454 -12.39853 -12.25553 -11.78404 -11.73201 -11.50455 -11.50017 -11.33591 -11.22684 -11.06588 -10.90669 -10.66486 -10.50985 -10.46568 -10.24494 -10.11087 -9.77974 -9.53447 -8.91804 -8.54162 -8.20445 -8.00147 -6.45020 -3.86034 2.32901 2.62286 3.18049 3.24067 3.28453 3.61814 3.86045 3.93195 4.01507 4.05350 4.23845 4.32933 4.40290 4.45926 4.52168 4.79782 4.80910 4.86390 4.99459 5.01503 5.05952 5.10264 5.15801 5.18741 5.25122 5.27592 5.31634 5.47240 5.48889 5.55569 5.57059 5.65397 5.74686 5.77349 5.82243 5.85010 5.88679 5.95515 5.97331 6.03100 6.06918 6.22714 7.07844 7.20155 7.47184 7.51015 7.52051 7.87658 8.02250 8.57145 9.14255 9.50035 10.01237 10.72533 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033378 B = 0.001689 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.666503 B =16578.465583 C =16835.867199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.178 3.822 3 O -0.562 6.562 4 C -0.163 4.163 5 C 0.529 3.471 6 O -0.535 6.535 7 N -0.615 5.615 8 C 0.100 3.900 9 C -0.124 4.124 10 C 0.072 3.928 11 H 0.058 0.942 12 N -0.656 5.656 13 C 0.052 3.948 14 C 0.439 3.561 15 O -0.583 6.583 16 N -0.562 5.562 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.107 3.893 26 C -0.175 4.175 27 C -0.139 4.139 28 C -0.183 4.183 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.385 0.615 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.354 0.646 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.007 5.864 -13.697 27.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.137 3.863 3 O -0.373 6.373 4 C -0.204 4.204 5 C 0.319 3.681 6 O -0.413 6.413 7 N -0.349 5.349 8 C -0.023 4.023 9 C -0.162 4.162 10 C -0.039 4.039 11 H 0.076 0.924 12 N -0.289 5.289 13 C -0.081 4.081 14 C 0.225 3.775 15 O -0.467 6.467 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.016 4.016 26 C -0.193 4.193 27 C -0.176 4.176 28 C -0.220 4.220 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.238 0.762 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.174 0.826 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.208 7.056 -13.609 27.814 hybrid contribution 1.465 -1.459 -0.076 2.070 sum -21.743 5.596 -13.685 26.294 Atomic orbital electron populations 1.21733 0.92027 1.02348 1.03220 1.20314 0.93943 0.81845 0.90210 1.86431 1.28802 1.25378 1.96695 1.22452 0.92390 1.03879 1.01630 1.20304 0.89708 0.77165 0.80962 1.90678 1.70231 1.46696 1.33662 1.48439 1.07524 1.61520 1.17431 1.22135 0.96803 0.98123 0.85277 1.22729 0.92832 1.03037 0.97632 1.22669 0.91273 0.96829 0.93128 0.92419 1.60077 1.04088 1.27816 1.36934 1.21707 0.97142 0.90632 0.98581 1.19766 0.87011 0.85849 0.84896 1.90534 1.67546 1.23964 1.64663 1.41850 1.20428 1.10607 1.46997 1.19662 0.96681 0.97779 1.28901 0.87932 1.25267 0.99945 0.94767 0.97915 1.69599 1.39975 1.00949 1.43762 0.85906 0.81347 0.77455 0.79451 1.19855 1.20969 1.19905 1.22299 0.80315 0.99569 0.99383 1.22818 1.05674 0.99035 0.91815 1.22681 0.91336 1.02051 1.01571 1.23000 0.99533 1.03023 0.96453 0.91757 0.91394 0.91103 0.76190 0.88004 0.88178 0.91364 0.91049 0.90019 0.89011 0.82607 0.89491 0.93719 0.77460 0.91791 0.90031 0.90358 0.88226 0.88450 0.89451 0.89380 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.75 37.16 0.33 -0.57 16 2 C 0.18 1.48 0.92 -90.62 -0.08 1.40 16 3 O -0.56 -5.90 12.10 -52.18 -0.63 -6.53 16 4 C -0.16 -1.19 4.15 -27.89 -0.12 -1.31 16 5 C 0.53 5.32 7.34 -10.99 -0.08 5.24 16 6 O -0.53 -6.63 11.64 -11.39 -0.13 -6.76 16 7 N -0.61 -5.93 3.33 -170.52 -0.57 -6.49 16 8 C 0.10 0.74 6.48 -3.06 -0.02 0.72 16 9 C -0.12 -1.14 6.60 -24.90 -0.16 -1.31 16 10 C 0.07 0.80 3.32 -65.56 -0.22 0.59 16 11 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 12 N -0.66 -9.75 6.00 -105.73 -0.63 -10.38 16 13 C 0.05 0.86 6.04 -4.98 -0.03 0.83 16 14 C 0.44 10.06 7.82 -10.98 -0.09 9.97 16 15 O -0.58 -15.50 15.78 5.54 0.09 -15.41 16 16 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 17 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 18 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 21 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.11 1.18 6.37 -2.53 -0.02 1.16 16 26 C -0.17 -1.54 4.03 -90.63 -0.37 -1.90 16 27 C -0.14 -1.36 7.93 -26.73 -0.21 -1.57 16 28 C -0.18 -1.52 9.61 -26.74 -0.26 -1.78 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.47 7.13 -51.93 -0.37 0.10 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.39 4.18 5.33 45.56 0.24 4.42 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.63 8.13 -51.93 -0.42 0.21 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.35 5.52 8.23 -39.29 -0.32 5.20 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 42 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 46 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 47 H 0.10 1.02 6.30 -51.93 -0.33 0.70 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.79 7.59 -51.93 -0.39 0.39 16 LS Contribution 400.39 15.07 6.03 6.03 Total: -1.00 -31.80 400.39 -9.51 -41.32 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -7.75 Total: 16.29 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.56 Total: 3.56 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.54 Total: -54.31 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.68 Total: -28.70 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.80 -9.51 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491721086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.294 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds