Wall clock time and date at job start Tue Mar 31 2020 23:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46749 * 2 1 4 4 C 1.52997 * 109.47008 * 120.00046 * 2 1 3 5 5 C 1.50697 * 109.47152 * 180.65170 * 4 2 1 6 6 O 1.21285 * 119.99797 * 354.41944 * 5 4 2 7 7 N 1.34775 * 120.00409 * 174.42069 * 5 4 2 8 8 C 1.47022 * 125.64415 * 0.02562 * 7 5 4 9 9 C 1.54326 * 107.26921 * 178.89413 * 8 7 5 10 10 C 1.55155 * 102.94100 * 337.80821 * 9 8 7 11 11 H 1.09000 * 111.00177 * 277.38468 * 10 9 8 12 12 N 1.46908 * 111.00293 * 153.57634 * 10 9 8 13 13 C 1.46899 * 110.99830 * 86.45049 * 12 10 9 14 14 C 1.50703 * 109.46979 * 179.97438 * 13 12 10 15 15 O 1.21298 * 119.99802 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00180 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00085 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00023 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00053 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00086 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47506 * 59.99877 * 21 19 17 23 23 H 1.48499 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47217 * 299.99742 * 21 19 17 25 25 C 1.47424 * 125.65114 * 179.97438 * 7 5 4 26 26 C 1.53000 * 109.47055 * 240.00385 * 2 1 3 27 27 C 1.52994 * 117.49851 * 128.62356 * 26 2 1 28 28 C 1.52991 * 117.50303 * 59.99685 * 26 2 1 29 29 H 1.08999 * 109.47413 * 304.79736 * 1 2 3 30 30 H 1.08999 * 109.47113 * 64.79930 * 1 2 3 31 31 H 1.08998 * 109.47225 * 184.79813 * 1 2 3 32 32 H 0.96702 * 113.99953 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47266 * 60.64500 * 4 2 1 34 34 H 1.09002 * 109.46754 * 300.64952 * 4 2 1 35 35 H 1.08999 * 109.88335 * 59.48072 * 8 7 5 36 36 H 1.09004 * 109.88275 * 298.30953 * 8 7 5 37 37 H 1.09002 * 110.72108 * 219.44591 * 9 8 7 38 38 H 1.09003 * 110.71756 * 96.17109 * 9 8 7 39 39 H 1.00900 * 110.99847 * 210.40794 * 12 10 9 40 40 H 1.08995 * 109.47710 * 300.00102 * 13 12 10 41 41 H 1.08996 * 109.47348 * 60.00368 * 13 12 10 42 42 H 0.97000 * 119.99780 * 359.97438 * 16 14 13 43 43 H 0.96992 * 120.00158 * 180.02562 * 20 19 17 44 44 H 1.08993 * 110.36876 * 85.33438 * 25 7 5 45 45 H 1.09005 * 110.36334 * 323.00755 * 25 7 5 46 46 H 1.08999 * 115.54258 * 274.32928 * 26 2 1 47 47 H 1.09001 * 117.50264 * 359.97438 * 27 26 2 48 48 H 1.08996 * 117.49775 * 145.01675 * 27 26 2 49 49 H 1.08998 * 117.50213 * 214.97861 * 28 26 2 50 50 H 1.09002 * 117.49880 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5469 -0.7073 1.2574 6 8 4.1543 -0.2638 0.3059 7 7 4.2196 -1.1876 2.3219 8 6 3.6120 -1.7521 3.5358 9 6 4.7646 -2.1944 4.4619 10 6 5.9514 -2.3729 3.4786 11 1 5.9134 -3.3482 2.9934 12 7 7.2364 -2.1783 4.1634 13 6 7.7003 -3.4294 4.7778 14 6 9.0182 -3.1913 5.4687 15 8 9.5214 -2.0877 5.4514 16 7 9.6379 -4.2045 6.1058 17 6 10.8367 -3.9877 6.7347 18 1 11.2843 -3.0049 6.7201 19 6 11.4753 -5.0322 7.3920 20 7 10.9304 -6.2279 7.4103 21 14 13.1082 -4.7366 8.2496 22 1 12.9349 -3.7032 9.3018 23 1 13.5776 -6.0015 8.8699 24 1 14.1107 -4.2703 7.2582 25 6 5.6864 -1.2350 2.4614 26 6 2.0400 -0.7212 -1.2493 27 6 3.0741 0.0053 -2.1116 28 6 1.6357 -0.1495 -2.6096 29 1 -0.3634 0.5864 0.8439 30 1 -0.3633 0.4376 -0.9298 31 1 -0.3633 -1.0240 0.0860 32 1 2.9703 1.4237 0.0004 33 1 1.6861 -1.7522 1.2435 34 1 1.6671 -0.2141 2.1391 35 1 2.9946 -2.6120 3.2760 36 1 3.0062 -0.9949 4.0337 37 1 4.5249 -3.1378 4.9524 38 1 4.9863 -1.4213 5.1977 39 1 7.9300 -1.8066 3.5319 40 1 6.9646 -3.7714 5.5057 41 1 7.8272 -4.1881 4.0056 42 1 9.2354 -5.0869 6.1199 43 1 11.3760 -6.9569 7.8694 44 1 6.0617 -0.2869 2.8465 45 1 6.1513 -1.4669 1.5032 46 1 2.1267 -1.8044 -1.1642 47 1 3.3909 0.9971 -1.7892 48 1 3.8415 -0.6000 -2.5941 49 1 1.4569 -0.8565 -3.4197 50 1 1.0067 0.7407 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491721086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:55 Heat of formation + Delta-G solvation = -113.847913 kcal Electronic energy + Delta-G solvation = -29478.382467 eV Core-core repulsion = 25312.368959 eV Total energy + Delta-G solvation = -4166.013507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.55826 -40.31568 -39.78930 -38.32491 -36.20297 -35.91898 -35.55306 -33.33204 -33.21030 -31.65365 -30.29444 -29.01052 -27.53265 -25.63735 -24.59965 -23.89931 -23.07292 -21.60007 -21.19703 -20.92617 -20.18300 -19.88290 -18.29988 -17.94571 -17.78720 -17.47008 -16.97115 -16.76790 -16.46662 -16.24395 -15.87579 -15.75942 -15.24623 -15.10588 -14.66957 -14.39586 -14.36884 -13.96488 -13.87566 -13.69718 -13.50889 -13.45979 -13.26492 -13.12803 -13.03583 -12.87223 -12.84698 -12.51770 -12.42773 -12.22396 -12.14930 -12.11270 -11.94837 -11.73815 -11.50378 -11.35914 -11.22787 -10.78475 -10.51410 -10.35546 -10.01800 -9.67040 -9.42661 -8.46806 -5.95439 1.39815 1.42130 1.52638 1.59905 1.87054 2.05265 2.29533 2.91334 2.94778 3.20565 3.28364 3.31594 3.51517 3.66873 3.71520 3.80195 3.82133 4.08898 4.11562 4.19543 4.26178 4.32481 4.35738 4.42273 4.48408 4.50872 4.58688 4.62384 4.69802 4.74172 4.80269 4.82396 4.86563 4.91624 4.98923 5.06865 5.15008 5.18424 5.27824 5.31086 5.31149 5.37463 5.40958 5.87162 6.08037 6.29104 6.48182 6.59964 6.71382 7.12542 7.13671 7.56139 8.11603 8.70179 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033378 B = 0.001689 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.666503 B =16578.465583 C =16835.867199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.171 3.829 3 O -0.577 6.577 4 C -0.155 4.155 5 C 0.522 3.478 6 O -0.565 6.565 7 N -0.616 5.616 8 C 0.102 3.898 9 C -0.121 4.121 10 C 0.076 3.924 11 H 0.070 0.930 12 N -0.670 5.670 13 C 0.069 3.931 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.335 4.335 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.111 3.889 26 C -0.171 4.171 27 C -0.157 4.157 28 C -0.172 4.172 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.380 0.620 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.345 0.655 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.243 4.461 -13.313 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.130 3.870 3 O -0.387 6.387 4 C -0.194 4.194 5 C 0.312 3.688 6 O -0.445 6.445 7 N -0.350 5.350 8 C -0.020 4.020 9 C -0.159 4.159 10 C -0.035 4.035 11 H 0.087 0.913 12 N -0.302 5.302 13 C -0.064 4.064 14 C 0.224 3.776 15 O -0.511 6.511 16 N -0.209 5.209 17 C -0.465 4.465 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.559 5.559 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.012 4.012 26 C -0.189 4.189 27 C -0.194 4.194 28 C -0.209 4.209 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.232 0.768 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.164 0.836 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.123 0.877 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.118 0.882 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.493 5.625 -13.217 29.261 hybrid contribution 2.144 -0.974 -0.244 2.367 sum -23.350 4.651 -13.461 27.350 Atomic orbital electron populations 1.21764 0.90409 1.03850 1.03092 1.20578 0.95056 0.80948 0.90458 1.86424 1.28410 1.27088 1.96803 1.22465 0.89885 1.05507 1.01585 1.20895 0.90911 0.76488 0.80469 1.90678 1.71066 1.47906 1.34884 1.48519 1.06749 1.61508 1.18185 1.22289 0.96234 0.99559 0.83959 1.22725 0.92468 1.03469 0.97261 1.22705 0.89972 0.97189 0.93609 0.91258 1.60090 1.05249 1.27158 1.37737 1.21553 0.93732 0.91907 0.99176 1.20897 0.88501 0.84642 0.83572 1.90504 1.69178 1.25620 1.65821 1.41913 1.20136 1.11309 1.47562 1.19624 0.98475 0.97325 1.31070 0.90389 1.26014 1.02856 0.94354 0.97942 1.69655 1.41058 1.01354 1.43882 0.85006 0.77354 0.77796 0.78292 1.19748 1.19454 1.19837 1.22094 0.81667 0.98796 0.98686 1.22898 1.04576 0.99193 0.92252 1.22587 0.92065 1.01564 1.03157 1.23017 0.97993 1.03115 0.96781 0.91419 0.91987 0.88830 0.76777 0.85308 0.86657 0.88589 0.89425 0.88324 0.90609 0.83564 0.87202 0.91473 0.76885 0.91275 0.91700 0.91501 0.87733 0.89854 0.90320 0.88178 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.75 71.98 0.63 -0.78 16 2 C 0.17 2.53 0.92 -10.79 -0.01 2.52 16 3 O -0.58 -11.89 12.10 -132.78 -1.61 -13.50 16 4 C -0.15 -1.81 4.15 29.85 0.12 -1.68 16 5 C 0.52 9.73 7.34 87.66 0.64 10.37 16 6 O -0.57 -14.07 11.64 13.16 0.15 -13.92 16 7 N -0.62 -10.77 3.33 -811.80 -2.70 -13.47 16 8 C 0.10 1.17 6.48 86.73 0.56 1.73 16 9 C -0.12 -1.92 6.60 31.78 0.21 -1.71 16 10 C 0.08 1.56 3.32 46.30 0.15 1.72 16 11 H 0.07 1.32 7.92 -2.39 -0.02 1.30 16 12 N -0.67 -19.51 6.00 -488.41 -2.93 -22.44 16 13 C 0.07 2.17 6.04 85.56 0.52 2.69 16 14 C 0.44 20.15 7.82 87.66 0.69 20.84 16 15 O -0.62 -34.14 15.78 -3.09 -0.05 -34.19 16 16 N -0.57 -28.68 5.29 -306.97 -1.62 -30.31 16 17 C -0.34 -18.84 9.68 84.04 0.81 -18.03 16 18 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 20 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 21 Si 0.99 42.53 29.55 68.60 2.03 44.55 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.11 2.41 6.37 86.85 0.55 2.96 16 26 C -0.17 -2.79 4.03 -10.80 -0.04 -2.84 16 27 C -0.16 -3.12 7.93 30.59 0.24 -2.88 16 28 C -0.17 -2.71 9.61 30.59 0.29 -2.41 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.73 7.13 -2.39 -0.02 0.72 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.38 8.52 5.33 -74.06 -0.39 8.13 16 33 H 0.13 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.12 1.04 8.13 -2.39 -0.02 1.02 16 35 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.35 10.97 8.23 -89.69 -0.74 10.24 16 40 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 42 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 43 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 44 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 1.58 8.04 -2.38 -0.02 1.56 16 46 H 0.10 1.60 8.11 -2.39 -0.02 1.58 16 47 H 0.08 1.88 6.30 -2.39 -0.02 1.86 16 48 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.09 1.48 7.59 -2.39 -0.02 1.46 16 Total: -1.00 -70.78 400.39 -1.50 -72.28 By element: Atomic # 1 Polarization: 48.02 SS G_CDS: -0.90 Total: 47.12 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.84 Total: 12.35 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -6.97 Total: -114.70 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -1.50 Total: -61.61 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.78 -1.50 -72.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491721086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.570 kcal (2) G-P(sol) polarization free energy of solvation -70.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds