Wall clock time and date at job start Tue Mar 31 2020 23:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50708 * 119.99972 * 2 1 4 4 C 1.53001 * 109.47033 * 119.99902 * 3 2 1 5 5 O 1.42899 * 109.47032 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.47338 * 240.00089 * 3 2 1 7 7 C 1.50706 * 109.47095 * 60.12190 * 6 3 2 8 8 O 1.21280 * 119.99780 * 354.31865 * 7 6 3 9 9 N 1.34780 * 120.00122 * 174.31195 * 7 6 3 10 10 C 1.46491 * 119.99967 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46783 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.35620 * 307.14012 * 11 10 9 13 13 C 1.54594 * 110.30970 * 69.28414 * 11 10 9 14 14 C 1.54945 * 102.92265 * 140.87149 * 13 11 10 15 15 N 1.48533 * 103.22539 * 322.58506 * 14 13 11 16 16 C 1.46903 * 110.99763 * 159.72028 * 15 14 13 17 17 C 1.50703 * 109.46966 * 52.60545 * 16 15 14 18 18 O 1.21291 * 120.00264 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99798 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99980 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99998 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99991 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00046 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99995 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47059 * 269.99913 * 24 22 20 26 26 H 1.48492 * 109.47136 * 29.99891 * 24 22 20 27 27 H 1.48500 * 109.46982 * 149.99929 * 24 22 20 28 28 C 1.47897 * 105.82074 * 39.20845 * 15 14 13 29 29 H 1.08000 * 119.99899 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00177 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00177 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47240 * 184.93606 * 4 3 2 33 33 H 1.09001 * 109.47394 * 304.94065 * 4 3 2 34 34 H 1.09002 * 109.46770 * 64.93911 * 4 3 2 35 35 H 0.96701 * 114.00116 * 299.99731 * 5 3 2 36 36 H 1.09006 * 109.47233 * 300.12931 * 6 3 2 37 37 H 1.09000 * 109.47332 * 180.12674 * 6 3 2 38 38 H 0.97006 * 119.99621 * 0.02562 * 9 7 6 39 39 H 1.08999 * 109.47157 * 60.00401 * 10 9 7 40 40 H 1.09002 * 109.47254 * 300.00030 * 10 9 7 41 41 H 1.08998 * 110.72458 * 259.22623 * 13 11 10 42 42 H 1.08999 * 110.72289 * 22.51300 * 13 11 10 43 43 H 1.09002 * 110.66618 * 204.15429 * 14 13 11 44 44 H 1.08995 * 110.66801 * 81.01953 * 14 13 11 45 45 H 1.08991 * 109.47052 * 292.60331 * 16 15 14 46 46 H 1.09000 * 109.46669 * 172.60449 * 16 15 14 47 47 H 0.97005 * 119.99704 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00033 * 180.02562 * 23 22 20 49 49 H 1.08999 * 109.92344 * 94.02351 * 28 15 14 50 50 H 1.09003 * 109.92179 * 215.31613 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9431 1.3863 -1.2492 7 6 2.0764 1.3095 -2.4797 8 8 0.8872 1.0974 -2.3715 9 7 2.6228 1.4766 -3.7004 10 6 1.7802 1.4025 -4.8964 11 6 2.6413 1.6247 -6.1414 12 1 3.2159 2.5460 -6.0455 13 6 3.5880 0.4224 -6.3606 14 6 3.5737 0.2463 -7.9000 15 7 2.1647 0.5446 -8.2631 16 6 2.0509 0.8985 -9.6843 17 6 2.6995 -0.1731 -10.5223 18 8 3.2069 -1.1366 -9.9881 19 7 2.7165 -0.0604 -11.8652 20 6 3.3069 -1.0350 -12.6275 21 1 3.7580 -1.8933 -12.1519 22 6 3.3240 -0.9190 -14.0120 23 7 3.8894 -1.8533 -14.7427 24 14 2.5430 0.5653 -14.8347 25 1 1.1156 0.2764 -15.1249 26 1 2.6365 1.7389 -13.9298 27 1 3.2562 0.8603 -16.1033 28 6 1.7569 1.6751 -7.4011 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.4205 2.3650 1.2946 33 1 2.3277 1.2406 2.1371 34 1 3.7078 0.6106 1.2061 35 1 0.5433 2.4034 -0.7642 36 1 3.6499 0.5565 -1.2504 37 1 3.4898 2.3293 -1.2480 38 1 3.5740 1.6459 -3.7869 39 1 1.0090 2.1711 -4.8457 40 1 1.3111 0.4200 -4.9501 41 1 4.5932 0.6536 -6.0083 42 1 3.2004 -0.4687 -5.8669 43 1 3.8329 -0.7768 -8.1726 44 1 4.2517 0.9555 -8.3746 45 1 2.5500 1.8509 -9.8626 46 1 0.9984 0.9836 -9.9543 47 1 2.3109 0.7104 -12.2923 48 1 3.9017 -1.7722 -15.7093 49 1 1.9120 2.6175 -7.9263 50 1 0.7082 1.5704 -7.1228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493201095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:41 Heat of formation + Delta-G solvation = -117.565173 kcal Electronic energy + Delta-G solvation = -29263.014411 eV Core-core repulsion = 25096.839711 eV Total energy + Delta-G solvation = -4166.174700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.31459 -40.80929 -39.46099 -38.55331 -36.21750 -35.73745 -33.93548 -33.80963 -33.23330 -32.08655 -30.50182 -29.27866 -28.49834 -26.32585 -25.14296 -23.32855 -22.48396 -21.61875 -21.31990 -21.06183 -20.45514 -20.19286 -18.15481 -17.96507 -17.73187 -17.35888 -16.91281 -16.70782 -16.47082 -16.33770 -16.01878 -15.54782 -15.32969 -15.11772 -14.80958 -14.68011 -14.43064 -14.38304 -14.00708 -13.62279 -13.57194 -13.34924 -13.20959 -13.04224 -12.97091 -12.92692 -12.75049 -12.60417 -12.43321 -12.35337 -12.15063 -11.98546 -11.93796 -11.83224 -11.57083 -11.46971 -11.06702 -10.94247 -10.28208 -10.22558 -10.07806 -9.94074 -9.29315 -8.42387 -6.03200 1.29025 1.34785 1.43410 1.48627 1.68829 1.93089 2.21723 2.22507 2.70851 3.13469 3.24316 3.33746 3.59430 3.69426 3.75839 3.84972 3.88101 3.95783 4.15332 4.30654 4.36916 4.39544 4.44132 4.45546 4.49156 4.59258 4.63044 4.70796 4.73413 4.81524 4.89349 4.91551 4.95194 4.97064 5.11927 5.14983 5.28004 5.31286 5.31702 5.49061 5.52313 5.74017 5.89714 5.94489 5.96222 6.11439 6.58229 6.58968 6.71791 6.87430 7.30747 7.37920 7.95203 8.75093 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.001668 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.731548 B =16778.815552 C =16918.724396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.189 4.189 3 C 0.168 3.832 4 C -0.133 4.133 5 O -0.575 6.575 6 C -0.161 4.161 7 C 0.507 3.493 8 O -0.571 6.571 9 N -0.717 5.717 10 C 0.139 3.861 11 C -0.095 4.095 12 H 0.107 0.893 13 C -0.110 4.110 14 C 0.034 3.966 15 N -0.520 5.520 16 C 0.044 3.956 17 C 0.448 3.552 18 O -0.605 6.605 19 N -0.590 5.590 20 C -0.328 4.328 21 H 0.056 0.944 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.258 1.258 26 H -0.231 1.231 27 H -0.275 1.275 28 C 0.040 3.960 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.381 0.619 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.415 0.585 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.081 0.919 46 H 0.117 0.883 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.067 0.933 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.838 15.432 27.751 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.207 4.207 3 C 0.127 3.873 4 C -0.190 4.190 5 O -0.385 6.385 6 C -0.200 4.200 7 C 0.295 3.705 8 O -0.452 6.452 9 N -0.369 5.369 10 C 0.015 3.985 11 C -0.114 4.114 12 H 0.125 0.875 13 C -0.148 4.148 14 C -0.093 4.093 15 N -0.245 5.245 16 C -0.087 4.087 17 C 0.236 3.764 18 O -0.489 6.489 19 N -0.232 5.232 20 C -0.457 4.457 21 H 0.074 0.926 22 C -0.213 4.213 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.155 1.155 27 H -0.200 1.200 28 C -0.088 4.088 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.251 0.749 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.099 0.901 46 H 0.135 0.865 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.323 14.245 28.593 32.030 hybrid contribution 0.232 0.459 -2.102 2.164 sum -2.091 14.704 26.492 30.371 Atomic orbital electron populations 1.23648 0.96623 1.01404 0.98923 1.23476 0.96723 0.98790 1.01751 1.20072 0.88112 0.84250 0.94840 1.21745 0.98735 1.03809 0.94735 1.86433 1.51398 1.49630 1.51060 1.22455 0.99312 1.07401 0.90862 1.21121 0.88709 0.75193 0.85507 1.90683 1.17577 1.49885 1.87027 1.45950 1.13068 1.72570 1.05283 1.21265 0.93001 1.01308 0.82949 1.22167 0.96314 0.99766 0.93143 0.87457 1.22589 1.00330 0.97978 0.93946 1.23304 0.88397 1.01681 0.95943 1.64566 1.21389 1.36523 1.02046 1.22089 1.02723 0.95060 0.88812 1.20867 0.83721 0.89362 0.82456 1.90496 1.50707 1.35764 1.71976 1.42031 1.53324 1.21965 1.05883 1.18994 1.34899 1.02249 0.89560 0.92619 1.26105 0.97509 1.01636 0.96080 1.69801 1.44775 1.36028 1.06816 0.85373 0.79034 0.78264 0.78895 1.18274 1.15453 1.19978 1.22995 1.00578 0.92441 0.92807 0.88716 0.89098 0.86300 0.90974 0.92486 0.88746 0.76687 0.85388 0.85967 0.74886 0.91300 0.93197 0.88815 0.91820 0.91266 0.94831 0.90143 0.86490 0.77535 0.91146 0.91497 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 12.60 67.79 0.85 -2.39 16 2 C -0.19 -3.11 7.47 25.66 0.19 -2.92 16 3 C 0.17 2.32 1.08 -11.54 -0.01 2.31 16 4 C -0.13 -1.29 8.82 71.98 0.64 -0.66 16 5 O -0.57 -10.81 11.92 -133.21 -1.59 -12.40 16 6 C -0.16 -1.48 4.97 29.85 0.15 -1.33 16 7 C 0.51 7.70 7.32 87.66 0.64 8.34 16 8 O -0.57 -12.88 11.96 12.74 0.15 -12.72 16 9 N -0.72 -8.53 5.43 -463.06 -2.51 -11.05 16 10 C 0.14 2.18 4.76 86.38 0.41 2.59 16 11 C -0.09 -1.42 3.03 -9.91 -0.03 -1.45 16 12 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 13 C -0.11 -2.20 6.41 31.80 0.20 -1.99 16 14 C 0.03 1.05 5.30 86.65 0.46 1.51 16 15 N -0.52 -15.33 5.26 -887.55 -4.67 -20.00 16 16 C 0.04 1.36 5.52 85.56 0.47 1.83 16 17 C 0.45 20.05 7.49 87.66 0.66 20.71 16 18 O -0.61 -32.80 13.09 -3.06 -0.04 -32.84 16 19 N -0.59 -27.65 5.09 -306.99 -1.56 -29.22 16 20 C -0.33 -19.10 10.16 84.04 0.85 -18.25 16 21 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.93 -56.07 13.96 21.66 0.30 -55.77 16 24 Si 0.96 38.48 27.74 68.60 1.90 40.38 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 26 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 27 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 28 C 0.04 0.76 6.36 86.45 0.55 1.31 16 29 H 0.09 1.69 8.06 -2.91 -0.02 1.67 16 30 H 0.09 1.88 6.41 -2.91 -0.02 1.86 16 31 H 0.12 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.38 7.51 5.79 -74.06 -0.43 7.08 16 36 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.41 2.60 8.41 -92.70 -0.78 1.82 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 1.06 7.99 -2.39 -0.02 1.04 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.44 7.76 -2.39 -0.02 1.42 16 43 H 0.07 2.82 5.97 -2.39 -0.01 2.80 16 44 H 0.03 1.01 8.02 -2.39 -0.02 0.99 16 45 H 0.08 2.00 7.81 -2.39 -0.02 1.98 16 46 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 47 H 0.39 15.07 5.76 -92.70 -0.53 14.53 16 48 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.07 1.06 7.57 -2.39 -0.02 1.04 16 50 H 0.09 1.60 7.68 -2.39 -0.02 1.58 16 Total: -1.00 -81.04 396.24 -2.35 -83.39 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -0.84 Total: 40.95 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 6.50 Total: 9.27 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -8.44 Total: -116.03 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -1.48 Total: -57.97 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.38 kcal Total: -81.04 -2.35 -83.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493201095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.175 kcal (2) G-P(sol) polarization free energy of solvation -81.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds