Wall clock time and date at job start Tue Mar 31 2020 23:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99728 * 2 1 4 4 C 1.52999 * 109.46846 * 240.00265 * 3 2 1 5 5 O 1.42902 * 109.47345 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47283 * 120.00154 * 3 2 1 7 7 C 1.50695 * 109.47130 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00394 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99959 * 180.02562 * 7 6 3 10 10 C 1.46503 * 119.99829 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.90462 * 308.86947 * 11 10 9 13 13 C 1.55400 * 111.02438 * 72.60323 * 11 10 9 14 14 C 1.54323 * 102.89803 * 153.63644 * 13 11 10 15 15 N 1.47441 * 107.37092 * 337.89564 * 14 13 11 16 16 C 1.46899 * 110.99964 * 236.66280 * 15 14 13 17 17 C 1.50699 * 109.47326 * 176.64981 * 16 15 14 18 18 O 1.21299 * 119.99842 * 6.12626 * 17 16 15 19 19 N 1.34771 * 120.00290 * 186.12786 * 17 16 15 20 20 C 1.37095 * 120.00152 * 179.97438 * 19 17 16 21 21 H 1.07994 * 119.99930 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00076 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99895 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00099 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47005 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47274 * 120.00383 * 24 22 20 27 27 H 1.48503 * 109.46913 * 240.00410 * 24 22 20 28 28 C 1.47848 * 108.56525 * 358.92790 * 15 14 13 29 29 H 1.07994 * 120.00121 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99942 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00121 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47413 * 300.00063 * 4 3 2 33 33 H 1.08997 * 109.47536 * 59.99699 * 4 3 2 34 34 H 1.09003 * 109.47143 * 180.02562 * 4 3 2 35 35 H 0.96708 * 113.99536 * 59.99877 * 5 3 2 36 36 H 1.09000 * 109.46852 * 59.99635 * 6 3 2 37 37 H 1.08999 * 109.46950 * 300.00250 * 6 3 2 38 38 H 0.96994 * 120.00063 * 0.02562 * 9 7 6 39 39 H 1.08996 * 109.47124 * 59.99752 * 10 9 7 40 40 H 1.09000 * 109.47035 * 299.99968 * 10 9 7 41 41 H 1.08996 * 110.67803 * 35.33195 * 13 11 10 42 42 H 1.09000 * 110.84698 * 272.01902 * 13 11 10 43 43 H 1.08995 * 109.88817 * 218.40442 * 14 13 11 44 44 H 1.09003 * 109.88542 * 97.38072 * 14 13 11 45 45 H 1.09007 * 109.46960 * 296.64772 * 16 15 14 46 46 H 1.08998 * 109.47400 * 56.64670 * 16 15 14 47 47 H 0.97003 * 120.00050 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99737 * 179.97438 * 23 22 20 49 49 H 1.09008 * 110.36952 * 142.92768 * 28 15 14 50 50 H 1.08991 * 110.37321 * 265.26505 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3862 -1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6911 1.2488 8 8 3.5460 3.4785 0.3388 9 7 4.5399 2.9827 2.2593 10 6 5.2723 4.2515 2.2593 11 6 6.1521 4.3325 3.5084 12 1 5.5722 4.1214 4.4069 13 6 7.3689 3.3725 3.3965 14 6 8.4215 4.0433 4.3040 15 7 8.0584 5.4676 4.4209 16 6 9.1661 6.3304 3.9888 17 6 8.7308 7.7721 4.0440 18 8 7.6497 8.0617 4.5115 19 7 9.5428 8.7396 3.5738 20 6 9.1466 10.0511 3.6235 21 1 8.1840 10.3090 4.0398 22 6 9.9839 11.0487 3.1393 23 7 11.1554 10.7349 2.6333 24 14 9.4444 12.8357 3.2077 25 1 8.0934 12.9219 3.8182 26 1 10.4088 13.6130 4.0267 27 1 9.4016 13.3928 1.8318 28 6 6.8478 5.7129 3.6085 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 3.6514 0.5577 -1.2494 33 1 2.3164 1.3284 -2.1393 34 1 3.4884 2.3300 -1.2491 35 1 0.5432 2.4033 0.7643 36 1 3.6514 0.5578 1.2492 37 1 2.3165 1.3285 2.1392 38 1 4.6615 2.3525 2.9866 39 1 4.5640 5.0799 2.2598 40 1 5.8985 4.3094 1.3690 41 1 7.7245 3.3200 2.3675 42 1 7.1154 2.3799 3.7689 43 1 9.4110 3.9483 3.8570 44 1 8.4134 3.5766 5.2890 45 1 10.0204 6.1832 4.6497 46 1 9.4486 6.0749 2.9676 47 1 10.4075 8.5080 3.2003 48 1 11.7397 11.4313 2.2949 49 1 6.1960 6.4312 4.1061 50 1 7.1226 6.0722 2.6169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493201097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:46 Heat of formation + Delta-G solvation = -95.334612 kcal Electronic energy + Delta-G solvation = -29262.567700 eV Core-core repulsion = 25097.356990 eV Total energy + Delta-G solvation = -4165.210710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.42429 -39.37877 -38.23954 -37.51120 -35.05222 -33.89559 -33.36637 -32.17544 -31.51254 -31.14484 -29.53972 -28.35310 -26.91308 -25.10717 -23.99454 -22.97161 -21.13057 -20.60238 -20.21544 -20.01522 -19.17269 -17.87120 -17.65146 -16.80157 -16.56536 -16.28798 -15.85844 -15.33109 -15.28069 -14.93175 -14.81215 -14.44816 -14.37546 -13.98129 -13.73543 -13.51957 -13.34713 -12.95764 -12.88619 -12.60671 -12.48388 -12.41419 -12.09042 -11.97237 -11.83031 -11.67396 -11.49826 -11.43738 -11.18070 -11.05187 -10.99726 -10.83720 -10.65137 -10.54769 -10.32870 -10.21569 -9.90027 -9.71607 -9.49045 -9.16965 -8.38244 -7.97812 -7.88015 -6.41022 -3.81662 1.75566 2.49710 2.96255 3.17360 3.28023 3.35292 3.91215 3.91591 4.05219 4.24998 4.27494 4.32173 4.52422 4.58352 4.69766 4.72678 4.79307 4.87240 5.06492 5.15138 5.24474 5.25666 5.27367 5.29758 5.38422 5.44716 5.57296 5.67398 5.70539 5.73077 5.75157 5.80448 5.84432 5.93761 6.03224 6.10741 6.11473 6.21978 6.28165 6.30207 6.38034 6.55982 7.25486 7.28960 7.32992 7.37935 7.56396 8.07234 8.10647 8.62264 9.18977 9.55024 10.06481 10.76801 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.001874 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.159661 B =14936.264695 C =15956.302378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.166 4.166 7 C 0.509 3.491 8 O -0.515 6.515 9 N -0.731 5.731 10 C 0.131 3.869 11 C -0.114 4.114 12 H 0.089 0.911 13 C -0.136 4.136 14 C 0.040 3.960 15 N -0.507 5.507 16 C 0.041 3.959 17 C 0.441 3.559 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.065 3.935 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.368 0.632 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.398 0.602 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.102 0.898 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -25.504 -2.231 28.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.135 3.865 4 C -0.205 4.205 5 O -0.342 6.342 6 C -0.206 4.206 7 C 0.295 3.705 8 O -0.390 6.390 9 N -0.384 5.384 10 C 0.007 3.993 11 C -0.133 4.133 12 H 0.107 0.893 13 C -0.174 4.174 14 C -0.088 4.088 15 N -0.231 5.231 16 C -0.091 4.091 17 C 0.227 3.773 18 O -0.463 6.463 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.062 4.062 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.215 0.785 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.231 0.769 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.120 0.880 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.549 -24.306 -2.711 27.959 hybrid contribution 0.520 -0.054 -0.087 0.530 sum -13.029 -24.360 -2.797 27.767 Atomic orbital electron populations 1.23892 0.96058 1.02469 0.99272 1.23615 0.96765 0.98758 1.01503 1.19846 0.88027 0.84091 0.94505 1.21949 0.98884 1.04332 0.95351 1.86757 1.49996 1.48823 1.48621 1.22396 1.00504 0.96938 1.00774 1.20420 0.79554 0.88428 0.82111 1.90720 1.63613 1.49769 1.34906 1.46065 1.45272 1.21506 1.25510 1.21301 0.94637 0.85626 0.97745 1.22694 0.95895 0.97178 0.97580 0.89302 1.22909 0.95668 0.98643 1.00228 1.22867 0.97520 0.89001 0.99446 1.63355 1.03855 1.02338 1.53589 1.22123 0.94453 0.93386 0.99124 1.19742 0.86732 0.86244 0.84630 1.90503 1.22948 1.82976 1.49886 1.41871 1.18048 1.06161 1.53957 1.19751 1.03773 0.81335 1.37894 0.87834 1.25264 0.95320 1.00530 0.96864 1.69621 1.09201 1.34398 1.41093 0.85802 0.78860 0.81842 0.77862 1.19204 1.20757 1.20780 1.22977 0.92008 0.94874 0.96390 0.87654 0.88200 0.86652 0.91910 0.92141 0.88694 0.78478 0.88062 0.88706 0.76861 0.90964 0.91382 0.91409 0.91081 0.92813 0.90612 0.89236 0.93561 0.77512 0.91940 0.88032 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 13.93 29.01 0.40 -0.63 16 2 C -0.19 -1.15 8.77 -36.02 -0.32 -1.47 16 3 C 0.18 1.43 0.94 -91.77 -0.09 1.34 16 4 C -0.15 -1.40 8.50 37.16 0.32 -1.08 16 5 O -0.54 -5.36 10.85 -53.47 -0.58 -5.94 16 6 C -0.17 -1.07 4.93 -27.89 -0.14 -1.21 16 7 C 0.51 5.19 7.39 -10.99 -0.08 5.11 16 8 O -0.52 -7.57 12.96 -12.68 -0.16 -7.74 16 9 N -0.73 -6.38 5.50 -60.29 -0.33 -6.71 16 10 C 0.13 1.47 5.13 -4.04 -0.02 1.45 16 11 C -0.11 -1.28 3.04 -88.34 -0.27 -1.55 16 12 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.14 -1.33 6.38 -24.76 -0.16 -1.48 16 14 C 0.04 0.48 6.89 -2.83 -0.02 0.46 16 15 N -0.51 -8.28 5.07 -232.69 -1.18 -9.46 16 16 C 0.04 0.73 5.07 -4.98 -0.03 0.70 16 17 C 0.44 10.40 7.34 -10.99 -0.08 10.32 16 18 O -0.58 -15.45 13.89 5.54 0.08 -15.37 16 19 N -0.56 -14.34 5.29 -10.97 -0.06 -14.40 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 24 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.07 1.05 4.75 -2.30 -0.01 1.04 16 29 H 0.11 0.61 6.41 -52.49 -0.34 0.27 16 30 H 0.10 0.45 8.06 -52.49 -0.42 0.02 16 31 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.17 5.51 -51.93 -0.29 0.89 16 35 H 0.37 2.38 8.05 45.56 0.37 2.74 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.40 2.33 8.47 -40.82 -0.35 1.98 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 41 H 0.07 0.68 7.92 -51.93 -0.41 0.27 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.60 7.58 -51.93 -0.39 0.21 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 46 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.10 1.93 6.94 -51.92 -0.36 1.57 16 50 H 0.04 0.77 7.63 -51.93 -0.40 0.38 16 LS Contribution 403.09 15.07 6.07 6.07 Total: -1.00 -34.59 403.09 -8.67 -43.26 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.48 Total: 13.01 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.73 Total: 5.00 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.84 Total: -54.51 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.67 Total: -29.05 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.59 -8.67 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493201097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.072 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds