Wall clock time and date at job start Tue Mar 31 2020 23:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99728 * 2 1 4 4 C 1.52999 * 109.46846 * 240.00265 * 3 2 1 5 5 O 1.42902 * 109.47345 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47283 * 120.00154 * 3 2 1 7 7 C 1.50695 * 109.47130 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00394 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99959 * 180.02562 * 7 6 3 10 10 C 1.46503 * 119.99829 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.90462 * 308.86947 * 11 10 9 13 13 C 1.55400 * 111.02438 * 72.60323 * 11 10 9 14 14 C 1.54323 * 102.89803 * 153.63644 * 13 11 10 15 15 N 1.47441 * 107.37092 * 337.89564 * 14 13 11 16 16 C 1.46899 * 110.99964 * 236.66280 * 15 14 13 17 17 C 1.50699 * 109.47326 * 176.64981 * 16 15 14 18 18 O 1.21299 * 119.99842 * 6.12626 * 17 16 15 19 19 N 1.34771 * 120.00290 * 186.12786 * 17 16 15 20 20 C 1.37095 * 120.00152 * 179.97438 * 19 17 16 21 21 H 1.07994 * 119.99930 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00076 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99895 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00099 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47005 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47274 * 120.00383 * 24 22 20 27 27 H 1.48503 * 109.46913 * 240.00410 * 24 22 20 28 28 C 1.47848 * 108.56525 * 358.92790 * 15 14 13 29 29 H 1.07994 * 120.00121 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99942 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00121 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47413 * 300.00063 * 4 3 2 33 33 H 1.08997 * 109.47536 * 59.99699 * 4 3 2 34 34 H 1.09003 * 109.47143 * 180.02562 * 4 3 2 35 35 H 0.96708 * 113.99536 * 59.99877 * 5 3 2 36 36 H 1.09000 * 109.46852 * 59.99635 * 6 3 2 37 37 H 1.08999 * 109.46950 * 300.00250 * 6 3 2 38 38 H 0.96994 * 120.00063 * 0.02562 * 9 7 6 39 39 H 1.08996 * 109.47124 * 59.99752 * 10 9 7 40 40 H 1.09000 * 109.47035 * 299.99968 * 10 9 7 41 41 H 1.08996 * 110.67803 * 35.33195 * 13 11 10 42 42 H 1.09000 * 110.84698 * 272.01902 * 13 11 10 43 43 H 1.08995 * 109.88817 * 218.40442 * 14 13 11 44 44 H 1.09003 * 109.88542 * 97.38072 * 14 13 11 45 45 H 1.09007 * 109.46960 * 296.64772 * 16 15 14 46 46 H 1.08998 * 109.47400 * 56.64670 * 16 15 14 47 47 H 0.97003 * 120.00050 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99737 * 179.97438 * 23 22 20 49 49 H 1.09008 * 110.36952 * 142.92768 * 28 15 14 50 50 H 1.08991 * 110.37321 * 265.26505 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3862 -1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6911 1.2488 8 8 3.5460 3.4785 0.3388 9 7 4.5399 2.9827 2.2593 10 6 5.2723 4.2515 2.2593 11 6 6.1521 4.3325 3.5084 12 1 5.5722 4.1214 4.4069 13 6 7.3689 3.3725 3.3965 14 6 8.4215 4.0433 4.3040 15 7 8.0584 5.4676 4.4209 16 6 9.1661 6.3304 3.9888 17 6 8.7308 7.7721 4.0440 18 8 7.6497 8.0617 4.5115 19 7 9.5428 8.7396 3.5738 20 6 9.1466 10.0511 3.6235 21 1 8.1840 10.3090 4.0398 22 6 9.9839 11.0487 3.1393 23 7 11.1554 10.7349 2.6333 24 14 9.4444 12.8357 3.2077 25 1 8.0934 12.9219 3.8182 26 1 10.4088 13.6130 4.0267 27 1 9.4016 13.3928 1.8318 28 6 6.8478 5.7129 3.6085 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 3.6514 0.5577 -1.2494 33 1 2.3164 1.3284 -2.1393 34 1 3.4884 2.3300 -1.2491 35 1 0.5432 2.4033 0.7643 36 1 3.6514 0.5578 1.2492 37 1 2.3165 1.3285 2.1392 38 1 4.6615 2.3525 2.9866 39 1 4.5640 5.0799 2.2598 40 1 5.8985 4.3094 1.3690 41 1 7.7245 3.3200 2.3675 42 1 7.1154 2.3799 3.7689 43 1 9.4110 3.9483 3.8570 44 1 8.4134 3.5766 5.2890 45 1 10.0204 6.1832 4.6497 46 1 9.4486 6.0749 2.9676 47 1 10.4075 8.5080 3.2003 48 1 11.7397 11.4313 2.2949 49 1 6.1960 6.4312 4.1061 50 1 7.1226 6.0722 2.6169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493201097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:45 Heat of formation + Delta-G solvation = -123.632563 kcal Electronic energy + Delta-G solvation = -29263.794791 eV Core-core repulsion = 25097.356990 eV Total energy + Delta-G solvation = -4166.437801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.23135 -40.70204 -39.37765 -38.71781 -36.17826 -35.79723 -33.97285 -33.42764 -33.02926 -32.10339 -30.52785 -29.17923 -28.34499 -26.54463 -25.41825 -23.60118 -22.22729 -21.55101 -21.16338 -20.93633 -20.55677 -19.88624 -18.32031 -17.98969 -17.46526 -17.21227 -16.87419 -16.57835 -16.45298 -16.12565 -16.04393 -15.78944 -15.47028 -15.42769 -14.91677 -14.45784 -14.39368 -14.26381 -13.98250 -13.70125 -13.55501 -13.30428 -13.20347 -13.09700 -12.98921 -12.86495 -12.57363 -12.46020 -12.42894 -12.30299 -12.15266 -12.04947 -11.97498 -11.84667 -11.61945 -11.48875 -11.17366 -10.57621 -10.30970 -10.26238 -10.03462 -10.02100 -9.21438 -8.48573 -5.97035 1.32918 1.34628 1.39818 1.54050 1.73700 2.03168 2.19984 2.27447 2.85729 3.18379 3.30005 3.37041 3.60669 3.69029 3.74746 3.82458 3.86895 4.06778 4.23490 4.26769 4.32300 4.32888 4.39195 4.42725 4.48366 4.58703 4.62442 4.69976 4.73405 4.77660 4.82235 4.87572 4.94314 5.00520 5.07870 5.16166 5.23189 5.29548 5.37421 5.39701 5.54464 5.68356 5.83811 5.87597 6.02058 6.17179 6.58864 6.63797 6.88028 7.11337 7.38525 7.54300 8.10102 8.69159 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.001874 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.159661 B =14936.264695 C =15956.302378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.188 4.188 3 C 0.170 3.830 4 C -0.150 4.150 5 O -0.566 6.566 6 C -0.155 4.155 7 C 0.504 3.496 8 O -0.568 6.568 9 N -0.715 5.715 10 C 0.140 3.860 11 C -0.095 4.095 12 H 0.103 0.897 13 C -0.123 4.123 14 C 0.036 3.964 15 N -0.526 5.526 16 C 0.053 3.947 17 C 0.437 3.563 18 O -0.615 6.615 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.064 3.936 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.380 0.620 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.417 0.583 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.060 0.940 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.845 -28.673 -1.416 31.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.206 4.206 3 C 0.129 3.871 4 C -0.207 4.207 5 O -0.373 6.373 6 C -0.194 4.194 7 C 0.292 3.708 8 O -0.446 6.446 9 N -0.369 5.369 10 C 0.015 3.985 11 C -0.114 4.114 12 H 0.121 0.879 13 C -0.161 4.161 14 C -0.091 4.091 15 N -0.251 5.251 16 C -0.078 4.078 17 C 0.225 3.775 18 O -0.501 6.501 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.064 4.064 29 H 0.117 0.883 30 H 0.133 0.867 31 H 0.154 0.846 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.229 0.771 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.129 0.871 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.129 0.871 46 H 0.082 0.918 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -13.282 -27.532 -1.862 30.626 hybrid contribution 0.410 0.923 -0.337 1.065 sum -12.872 -26.609 -2.200 29.641 Atomic orbital electron populations 1.24031 0.96172 1.02922 0.98684 1.23579 0.96769 0.98256 1.01970 1.19953 0.88046 0.84625 0.94457 1.21939 0.99232 1.03442 0.96045 1.86724 1.50802 1.50096 1.49718 1.22401 1.00733 0.95279 1.01026 1.21180 0.79175 0.89264 0.81214 1.90720 1.65230 1.51728 1.36929 1.45870 1.44449 1.20661 1.25913 1.20984 0.94006 0.86286 0.97212 1.22496 0.96441 0.94600 0.97884 0.87874 1.22892 0.93546 0.99659 1.00034 1.23024 0.98800 0.86102 1.01128 1.63305 1.03244 1.04776 1.53739 1.22005 0.95500 0.89530 1.00790 1.20819 0.85756 0.88365 0.82599 1.90484 1.24488 1.84185 1.50961 1.41941 1.18529 1.05919 1.54787 1.19688 1.03547 0.83178 1.39759 0.90388 1.26034 0.95206 1.04142 0.95917 1.69677 1.09681 1.35814 1.40959 0.84879 0.78233 0.76985 0.78289 1.19882 1.19403 1.19701 1.22788 0.92186 0.96993 0.94445 0.88333 0.86693 0.84627 0.89586 0.93253 0.92019 0.77127 0.84911 0.86022 0.74600 0.93686 0.92945 0.91452 0.87126 0.91580 0.88881 0.87086 0.91849 0.77071 0.91309 0.92133 0.96022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 13.93 67.78 0.94 -0.76 16 2 C -0.19 -1.81 8.77 25.65 0.22 -1.59 16 3 C 0.17 2.50 0.94 -11.54 -0.01 2.49 16 4 C -0.15 -2.78 8.50 71.98 0.61 -2.17 16 5 O -0.57 -11.30 10.85 -131.54 -1.43 -12.73 16 6 C -0.15 -1.56 4.93 29.85 0.15 -1.41 16 7 C 0.50 9.74 7.39 87.65 0.65 10.39 16 8 O -0.57 -17.30 12.96 14.39 0.19 -17.11 16 9 N -0.72 -11.20 5.50 -463.06 -2.55 -13.74 16 10 C 0.14 3.17 5.13 86.38 0.44 3.62 16 11 C -0.09 -2.01 3.04 -9.32 -0.03 -2.04 16 12 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 13 C -0.12 -1.98 6.38 31.87 0.20 -1.77 16 14 C 0.04 0.76 6.89 86.65 0.60 1.35 16 15 N -0.53 -16.78 5.07 -890.10 -4.51 -21.29 16 16 C 0.05 1.88 5.07 85.56 0.43 2.31 16 17 C 0.44 21.32 7.34 87.66 0.64 21.96 16 18 O -0.62 -34.53 13.89 -3.09 -0.04 -34.57 16 19 N -0.57 -30.19 5.29 -306.99 -1.62 -31.81 16 20 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -50.48 13.05 21.66 0.28 -50.20 16 24 Si 0.99 43.95 29.55 68.60 2.03 45.98 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 28 C 0.06 2.13 4.75 86.77 0.41 2.55 16 29 H 0.10 1.04 6.41 -2.91 -0.02 1.02 16 30 H 0.11 0.73 8.06 -2.91 -0.02 0.70 16 31 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.60 5.51 -2.39 -0.01 1.58 16 35 H 0.38 4.79 8.05 -74.05 -0.60 4.19 16 36 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.42 3.32 8.47 -92.71 -0.79 2.54 16 39 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.36 7.98 -2.39 -0.02 1.34 16 41 H 0.07 1.14 7.92 -2.39 -0.02 1.12 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.25 7.58 -2.39 -0.02 1.23 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 46 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 47 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 48 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 49 H 0.06 2.48 6.94 -2.38 -0.02 2.46 16 50 H 0.02 0.79 7.63 -2.39 -0.02 0.77 16 Total: -1.00 -80.69 403.09 -2.25 -82.94 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: -1.15 Total: 36.34 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 6.55 Total: 16.20 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -8.40 Total: -117.05 kcal Atomic # 8 Polarization: -63.13 SS G_CDS: -1.28 Total: -64.41 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -80.69 -2.25 -82.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493201097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.690 kcal (2) G-P(sol) polarization free energy of solvation -80.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds