Wall clock time and date at job start Tue Mar 31 2020 23:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50707 * 119.99800 * 2 1 4 4 C 1.52993 * 109.47102 * 119.99853 * 3 2 1 5 5 O 1.42901 * 109.46977 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47072 * 239.99946 * 3 2 1 7 7 C 1.50705 * 109.47073 * 56.92097 * 6 3 2 8 8 O 1.21281 * 119.99766 * 5.55968 * 7 6 3 9 9 N 1.34775 * 119.99833 * 185.56328 * 7 6 3 10 10 C 1.46500 * 119.99797 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47094 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.64651 * 54.30030 * 11 10 9 13 13 C 1.54598 * 110.72493 * 291.15105 * 11 10 9 14 14 C 1.53995 * 105.13895 * 219.68281 * 13 11 10 15 15 N 1.47902 * 107.05811 * 358.77584 * 14 13 11 16 16 C 1.46899 * 111.00088 * 145.84575 * 15 14 13 17 17 C 1.50699 * 109.47084 * 183.65189 * 16 15 14 18 18 O 1.21293 * 120.00278 * 353.85556 * 17 16 15 19 19 N 1.34775 * 120.00231 * 173.85656 * 17 16 15 20 20 C 1.37101 * 120.00344 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99758 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00026 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99976 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00343 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.47423 * 89.99828 * 24 22 20 26 26 H 1.48500 * 109.47488 * 210.00335 * 24 22 20 27 27 H 1.48502 * 109.47031 * 330.00204 * 24 22 20 28 28 C 1.48731 * 105.94482 * 25.19954 * 15 14 13 29 29 H 1.07996 * 119.99403 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99939 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00404 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47438 * 296.95517 * 4 3 2 33 33 H 1.09006 * 109.47276 * 176.95170 * 4 3 2 34 34 H 1.09006 * 109.46961 * 56.95408 * 4 3 2 35 35 H 0.96707 * 113.99604 * 299.99942 * 5 3 2 36 36 H 1.08998 * 109.47249 * 176.92032 * 6 3 2 37 37 H 1.08994 * 109.47013 * 296.92360 * 6 3 2 38 38 H 0.96998 * 120.00079 * 359.97438 * 9 7 6 39 39 H 1.08996 * 109.47245 * 299.99708 * 10 9 7 40 40 H 1.08999 * 109.47174 * 60.00019 * 10 9 7 41 41 H 1.08998 * 110.30974 * 338.59433 * 13 11 10 42 42 H 1.08999 * 110.31404 * 100.66636 * 13 11 10 43 43 H 1.09007 * 109.91607 * 118.12345 * 14 13 11 44 44 H 1.08997 * 109.91791 * 239.22483 * 14 13 11 45 45 H 1.09005 * 109.47327 * 303.64822 * 16 15 14 46 46 H 1.09001 * 109.47366 * 63.64990 * 16 15 14 47 47 H 0.97009 * 119.99850 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00302 * 180.02562 * 23 22 20 49 49 H 1.08997 * 110.83901 * 202.57714 * 28 15 14 50 50 H 1.09003 * 110.58013 * 79.38868 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3863 1.2492 5 8 1.1348 2.3913 -0.0006 6 6 2.9431 1.3863 -1.2493 7 6 2.0854 1.2305 -2.4786 8 8 0.8787 1.1717 -2.3725 9 7 2.6593 1.1566 -3.6958 10 6 1.8255 1.0046 -4.8907 11 6 2.7185 0.9473 -6.1317 12 1 3.4720 0.1667 -6.0273 13 6 3.3838 2.3186 -6.3908 14 6 3.3480 2.5006 -7.9196 15 7 2.7257 1.2846 -8.4868 16 6 1.9293 1.6075 -9.6781 17 6 1.2402 0.3625 -10.1743 18 8 1.4832 -0.7100 -9.6627 19 7 0.3540 0.4408 -11.1867 20 6 -0.2733 -0.6918 -11.6378 21 1 -0.0569 -1.6467 -11.1822 22 6 -1.1865 -0.6111 -12.6819 23 7 -1.7874 -1.6968 -13.1147 24 14 -1.5602 1.0405 -13.4705 25 1 -0.6248 1.2727 -14.6002 26 1 -2.9567 1.0433 -13.9756 27 1 -1.3963 2.1187 -12.4626 28 6 1.8696 0.7226 -7.4082 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 2.3126 1.3830 2.1383 33 1 3.5286 2.3053 1.2223 34 1 3.6148 0.5282 1.2769 35 1 0.5438 2.4030 -0.7660 36 1 3.4462 2.3528 -1.2773 37 1 3.6870 0.5901 -1.2221 38 1 3.6244 1.2039 -3.7806 39 1 1.2476 0.0836 -4.8158 40 1 1.1470 1.8539 -4.9707 41 1 2.8182 3.1119 -5.9021 42 1 4.4134 2.3133 -6.0330 43 1 2.7518 3.3766 -8.1754 44 1 4.3615 2.6163 -8.3036 45 1 1.1821 2.3591 -9.4230 46 1 2.5837 1.9961 -10.4584 47 1 0.1600 1.2985 -11.5963 48 1 -2.4247 -1.6405 -13.8438 49 1 1.6909 -0.3405 -7.5692 50 1 0.9272 1.2668 -7.3443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493201099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:52 Heat of formation + Delta-G solvation = -120.899938 kcal Electronic energy + Delta-G solvation = -29427.766725 eV Core-core repulsion = 25261.447419 eV Total energy + Delta-G solvation = -4166.319306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.33450 -40.76379 -39.46007 -38.57835 -36.19578 -35.82858 -33.95591 -33.80056 -33.25352 -32.10771 -30.53077 -29.25635 -28.47860 -26.43385 -25.24282 -23.35601 -22.39837 -21.48783 -21.27448 -21.23652 -20.47313 -20.20078 -18.20863 -17.94905 -17.80209 -17.27149 -16.93286 -16.79469 -16.43215 -16.24315 -16.13812 -15.61147 -15.40880 -15.09052 -14.86470 -14.59011 -14.55049 -14.30781 -14.11237 -13.81716 -13.58780 -13.26527 -13.23225 -13.02930 -12.96995 -12.92567 -12.82681 -12.61509 -12.45499 -12.37762 -12.08888 -11.99716 -11.95600 -11.88868 -11.50825 -11.48353 -11.07075 -10.93777 -10.35796 -10.25419 -10.18758 -9.98957 -9.32233 -8.42788 -6.03559 1.28263 1.33799 1.42589 1.43788 1.65852 1.93302 2.15681 2.21270 2.67895 3.12941 3.18415 3.34728 3.59446 3.70859 3.74708 3.85523 3.87036 3.95232 4.14915 4.30106 4.32221 4.33148 4.35203 4.40603 4.46620 4.56823 4.62309 4.71330 4.72727 4.77384 4.82414 4.87812 4.95569 4.99135 5.10681 5.13624 5.23911 5.29734 5.31431 5.43784 5.51247 5.70516 5.86795 5.90838 5.93145 6.07761 6.56338 6.58099 6.72079 6.86807 7.29162 7.37862 7.94914 8.74803 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.001929 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.930674 B =14513.260668 C =15306.822437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.167 3.833 4 C -0.132 4.132 5 O -0.577 6.577 6 C -0.158 4.158 7 C 0.507 3.493 8 O -0.574 6.574 9 N -0.712 5.712 10 C 0.139 3.861 11 C -0.090 4.090 12 H 0.092 0.908 13 C -0.114 4.114 14 C 0.032 3.968 15 N -0.517 5.517 16 C 0.046 3.954 17 C 0.448 3.552 18 O -0.605 6.605 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.055 0.945 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.233 1.233 28 C 0.046 3.954 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.382 0.618 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.417 0.583 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.062 0.938 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.819 15.230 23.962 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.210 4.210 3 C 0.126 3.874 4 C -0.190 4.190 5 O -0.388 6.388 6 C -0.198 4.198 7 C 0.295 3.705 8 O -0.455 6.455 9 N -0.364 5.364 10 C 0.014 3.986 11 C -0.109 4.109 12 H 0.110 0.890 13 C -0.152 4.152 14 C -0.095 4.095 15 N -0.241 5.241 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.489 6.489 19 N -0.234 5.234 20 C -0.456 4.456 21 H 0.073 0.927 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.157 1.157 28 C -0.082 4.082 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.254 0.746 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.140 0.860 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.693 14.144 24.595 31.951 hybrid contribution -1.602 0.300 -1.531 2.237 sum 13.090 14.444 23.064 30.198 Atomic orbital electron populations 1.23690 0.96777 1.01418 0.98946 1.23551 0.96674 0.99004 1.01754 1.20095 0.88137 0.84171 0.94966 1.21743 0.98605 1.03998 0.94607 1.86418 1.51494 1.49654 1.51249 1.22455 0.99333 1.07487 0.90492 1.21217 0.88857 0.74941 0.85502 1.90646 1.16670 1.51407 1.86760 1.45857 1.11370 1.74011 1.05209 1.21093 0.93068 1.00895 0.83563 1.22176 0.97360 0.99682 0.91713 0.88968 1.22475 1.02701 0.95396 0.94605 1.23044 1.00847 0.90552 0.95105 1.64471 1.29171 1.26525 1.03961 1.22063 0.97388 0.93264 0.95857 1.20885 0.81971 0.91678 0.81848 1.90523 1.66365 1.32343 1.59703 1.42049 1.39395 1.08922 1.33017 1.18987 1.21697 0.88191 1.16730 0.92663 1.26120 0.95530 1.02887 0.96933 1.69805 1.28565 1.30818 1.28292 0.85365 0.78862 0.77580 0.79713 1.17979 1.20055 1.15652 1.23145 0.94253 1.00580 0.90259 0.88727 0.89180 0.86018 0.92600 0.90705 0.88725 0.76506 0.85665 0.85059 0.74589 0.93531 0.92117 0.90298 0.88174 0.92576 0.88858 0.90683 0.86048 0.77567 0.91154 0.91966 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 12.67 67.78 0.86 -2.70 16 2 C -0.19 -3.32 7.48 25.65 0.19 -3.13 16 3 C 0.17 2.44 1.08 -11.54 -0.01 2.43 16 4 C -0.13 -1.32 8.83 71.98 0.64 -0.69 16 5 O -0.58 -11.76 11.93 -131.95 -1.57 -13.34 16 6 C -0.16 -1.53 4.99 29.85 0.15 -1.38 16 7 C 0.51 8.45 7.31 87.66 0.64 9.09 16 8 O -0.57 -14.24 11.96 14.00 0.17 -14.07 16 9 N -0.71 -9.72 5.43 -463.07 -2.51 -12.23 16 10 C 0.14 2.74 5.01 86.38 0.43 3.18 16 11 C -0.09 -1.78 3.09 -9.59 -0.03 -1.81 16 12 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 13 C -0.11 -1.59 6.32 31.47 0.20 -1.39 16 14 C 0.03 0.58 6.70 86.45 0.58 1.16 16 15 N -0.52 -15.01 5.11 -887.01 -4.53 -19.54 16 16 C 0.05 1.41 5.32 85.56 0.45 1.86 16 17 C 0.45 20.36 7.41 87.66 0.65 21.01 16 18 O -0.61 -33.41 13.85 -3.07 -0.04 -33.46 16 19 N -0.59 -28.13 5.09 -306.99 -1.56 -29.70 16 20 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 21 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 23 N -0.93 -56.74 13.96 21.66 0.30 -56.44 16 24 Si 0.96 39.05 27.74 68.60 1.90 40.96 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 26 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 28 C 0.05 1.40 5.03 86.61 0.44 1.84 16 29 H 0.09 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.09 2.05 6.41 -2.91 -0.02 2.03 16 31 H 0.12 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.38 8.39 5.69 -74.05 -0.42 7.97 16 36 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.42 2.94 8.41 -92.71 -0.78 2.16 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.31 8.02 -2.39 -0.02 1.29 16 41 H 0.08 0.98 7.76 -2.39 -0.02 0.96 16 42 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.91 7.68 -2.38 -0.02 0.89 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.08 1.95 7.98 -2.38 -0.02 1.93 16 46 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.39 15.31 5.76 -92.70 -0.53 14.78 16 48 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 49 H 0.06 2.49 6.43 -2.39 -0.02 2.48 16 50 H 0.03 1.05 7.92 -2.39 -0.02 1.03 16 Total: -1.00 -82.83 397.98 -2.18 -85.01 By element: Atomic # 1 Polarization: 43.04 SS G_CDS: -0.83 Total: 42.20 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 6.51 Total: 10.60 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -8.31 Total: -117.91 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -1.45 Total: -60.87 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.90 Total: 40.96 kcal Total: -82.83 -2.18 -85.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493201099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.889 kcal (2) G-P(sol) polarization free energy of solvation -82.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds