Wall clock time and date at job start Tue Mar 31 2020 23:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00141 * 2 1 4 4 C 1.52991 * 109.47003 * 119.99965 * 3 2 1 5 5 O 1.42903 * 109.46689 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.46906 * 240.00219 * 3 2 1 7 7 C 1.50707 * 109.47265 * 56.36420 * 6 3 2 8 8 O 1.21275 * 119.99992 * 5.57374 * 7 6 3 9 9 N 1.34777 * 119.99586 * 185.56974 * 7 6 3 10 10 C 1.46506 * 119.99363 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.50573 * 34.91953 * 10 9 7 12 12 C 1.53122 * 109.50184 * 274.80430 * 10 9 7 13 13 C 1.53116 * 109.15872 * 182.40639 * 12 10 9 14 14 C 1.53043 * 109.27978 * 57.65457 * 13 12 10 15 15 N 1.46845 * 109.51928 * 300.82088 * 14 13 12 16 16 C 1.46908 * 110.99759 * 185.83941 * 15 14 13 17 17 C 1.50697 * 109.47142 * 65.78772 * 16 15 14 18 18 O 1.21297 * 120.00300 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00000 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00081 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00113 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00296 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00220 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99745 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47122 * 90.00025 * 24 22 20 26 26 H 1.48494 * 109.46972 * 210.00003 * 24 22 20 27 27 H 1.48496 * 109.46852 * 329.99832 * 24 22 20 28 28 C 1.46842 * 111.19928 * 61.74479 * 15 14 13 29 29 H 1.08003 * 119.99776 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00236 * 179.72728 * 1 2 3 31 31 H 1.07999 * 119.99663 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.46982 * 55.91634 * 4 3 2 33 33 H 1.09003 * 109.46981 * 175.91453 * 4 3 2 34 34 H 1.08998 * 109.47793 * 295.91677 * 4 3 2 35 35 H 0.96695 * 114.00005 * 299.99814 * 5 3 2 36 36 H 1.09002 * 109.46847 * 176.36284 * 6 3 2 37 37 H 1.08993 * 109.47286 * 296.36301 * 6 3 2 38 38 H 0.96995 * 120.00787 * 0.02562 * 9 7 6 39 39 H 1.08995 * 109.52233 * 302.30941 * 12 10 9 40 40 H 1.08995 * 109.52728 * 62.50360 * 12 10 9 41 41 H 1.09001 * 109.50747 * 297.71388 * 13 12 10 42 42 H 1.08998 * 109.50549 * 177.59334 * 13 12 10 43 43 H 1.08996 * 109.46343 * 180.80603 * 14 13 12 44 44 H 1.08997 * 109.44976 * 60.82830 * 14 13 12 45 45 H 1.08993 * 109.47320 * 185.78977 * 16 15 14 46 46 H 1.09002 * 109.47087 * 305.78906 * 16 15 14 47 47 H 0.96997 * 119.99968 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00208 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.45972 * 178.23778 * 28 15 14 50 50 H 1.08996 * 109.46457 * 58.26978 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3861 -1.2493 7 6 2.0872 1.2168 -2.4781 8 8 0.8810 1.1493 -2.3723 9 7 2.6624 1.1404 -3.6946 10 6 1.8303 0.9764 -4.8892 11 1 0.8951 1.5207 -4.7588 12 6 1.5319 -0.5100 -5.1041 13 6 0.7130 -0.6777 -6.3870 14 6 1.4895 -0.0822 -7.5636 15 7 1.7495 1.3406 -7.3101 16 6 2.3713 1.9784 -8.4783 17 6 1.3946 1.9857 -9.6259 18 8 0.2894 1.5063 -9.4848 19 7 1.7495 2.5240 -10.8095 20 6 0.8608 2.5312 -11.8533 21 1 -0.1239 2.1058 -11.7271 22 6 1.2265 3.0866 -13.0734 23 7 0.3744 3.0939 -14.0738 24 14 2.9293 3.8230 -13.2915 25 1 3.8647 2.7738 -13.7706 26 1 2.8688 4.9239 -14.2861 27 1 3.4081 4.3565 -11.9910 28 6 2.5745 1.5239 -6.1092 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9352 -0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 3.6020 0.5185 1.2865 33 1 3.5422 2.2960 1.2133 34 1 2.3120 1.4014 2.1377 35 1 0.5433 2.4033 -0.7642 36 1 3.4386 2.3565 -1.2824 37 1 3.6933 0.5960 -1.2173 38 1 3.6272 1.1941 -3.7792 39 1 2.4684 -1.0601 -5.1953 40 1 0.9640 -0.8938 -4.2567 41 1 -0.2402 -0.1598 -6.2806 42 1 0.5337 -1.7375 -6.5683 43 1 0.9029 -0.1872 -8.4763 44 1 2.4364 -0.6098 -7.6778 45 1 2.6468 3.0031 -8.2292 46 1 3.2637 1.4216 -8.7643 47 1 2.6337 2.9064 -10.9227 48 1 0.6298 3.4813 -14.9256 49 1 2.7759 2.5855 -5.9656 50 1 3.5163 0.9889 -6.2305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494263984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:43 Heat of formation + Delta-G solvation = -93.461764 kcal Electronic energy + Delta-G solvation = -29957.349871 eV Core-core repulsion = 25792.220374 eV Total energy + Delta-G solvation = -4165.129497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.69309 -39.39589 -38.25926 -37.39661 -34.88180 -33.91808 -33.23663 -32.78061 -31.68740 -31.58494 -29.98397 -28.20870 -27.55098 -24.64695 -23.33933 -22.85426 -22.38546 -20.79637 -20.06342 -19.70578 -19.38029 -18.32476 -17.51235 -17.09440 -16.58822 -16.05623 -15.73765 -15.60510 -15.09650 -14.94430 -14.85259 -14.65472 -14.14794 -13.90782 -13.72273 -13.50023 -13.44451 -13.12046 -12.93720 -12.79052 -12.62730 -12.49213 -12.34991 -12.30746 -12.02866 -11.94936 -11.62670 -11.39338 -11.29466 -11.19545 -10.89586 -10.70085 -10.60976 -10.54627 -10.35852 -10.16914 -9.98833 -9.54436 -9.41512 -9.21711 -8.59456 -8.20059 -8.01143 -6.32374 -3.83808 2.15253 2.36273 2.78851 3.00658 3.04574 3.13436 3.71148 3.93090 3.97241 4.08652 4.29958 4.39795 4.49939 4.63187 4.68681 4.82896 4.93792 5.01183 5.05774 5.11423 5.17539 5.18435 5.22816 5.25940 5.43051 5.45837 5.47857 5.50899 5.60676 5.66475 5.75476 5.76396 5.82084 5.89510 5.91036 6.00699 6.04039 6.21278 6.39901 6.42847 6.48672 6.61494 7.10201 7.21415 7.26583 7.47490 7.56858 7.96985 8.13139 8.58601 8.93919 9.40863 9.81535 10.80686 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026381 B = 0.001979 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.133367 B =14145.575371 C =14553.937475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.197 4.197 3 C 0.179 3.821 4 C -0.135 4.135 5 O -0.562 6.562 6 C -0.168 4.168 7 C 0.517 3.483 8 O -0.533 6.533 9 N -0.725 5.725 10 C 0.149 3.851 11 H 0.100 0.900 12 C -0.127 4.127 13 C -0.111 4.111 14 C 0.049 3.951 15 N -0.511 5.511 16 C 0.045 3.955 17 C 0.452 3.548 18 O -0.557 6.557 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.051 3.949 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.388 0.612 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.398 0.602 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.023 0.977 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.078 0.922 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.991 -5.387 26.813 29.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.215 4.215 3 C 0.137 3.863 4 C -0.192 4.192 5 O -0.373 6.373 6 C -0.209 4.209 7 C 0.303 3.697 8 O -0.410 6.410 9 N -0.376 5.376 10 C 0.044 3.956 11 H 0.118 0.882 12 C -0.165 4.165 13 C -0.149 4.149 14 C -0.078 4.078 15 N -0.235 5.235 16 C -0.086 4.086 17 C 0.238 3.762 18 O -0.439 6.439 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.078 4.078 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.241 0.759 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.231 0.769 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.125 0.875 44 H 0.041 0.959 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.146 -5.329 27.366 29.669 hybrid contribution 2.500 0.082 -1.272 2.806 sum 12.645 -5.247 26.094 29.467 Atomic orbital electron populations 1.23683 0.95995 1.01857 0.96754 1.23240 0.96844 0.97705 1.03729 1.19767 0.88120 0.85397 0.92997 1.21711 0.98815 1.02340 0.96349 1.86434 1.50912 1.48646 1.51282 1.22469 0.99836 1.05147 0.93420 1.20583 0.88997 0.75616 0.84492 1.90651 1.14717 1.49566 1.86056 1.46068 1.10528 1.74600 1.06373 1.20959 0.95193 0.96651 0.82769 0.88168 1.21958 1.00205 0.95558 0.98816 1.21504 0.99742 1.00537 0.93138 1.22342 0.98726 0.85943 1.00802 1.61375 1.45484 1.15025 1.01653 1.21868 0.95564 1.00151 0.91040 1.19603 0.89026 0.84315 0.83292 1.90537 1.22271 1.48765 1.82287 1.42208 1.15154 1.54364 1.11306 1.19424 0.98309 1.37249 0.88287 0.86235 1.25042 0.98001 0.97717 0.95440 1.69619 1.34838 1.44742 1.02882 0.86674 0.84308 0.79837 0.78574 1.19694 1.20175 1.19511 1.22256 0.94112 1.01031 0.90418 0.87921 0.88861 0.87496 0.91111 0.91715 0.91380 0.75920 0.87791 0.88144 0.76872 0.92505 0.91516 0.90510 0.91382 0.87502 0.95929 0.89184 0.93314 0.79758 0.91613 0.90352 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 12.65 29.01 0.37 -1.04 16 2 C -0.20 -1.71 7.45 -36.02 -0.27 -1.98 16 3 C 0.18 1.44 1.08 -91.78 -0.10 1.34 16 4 C -0.13 -0.84 8.82 37.15 0.33 -0.51 16 5 O -0.56 -5.89 11.93 -52.64 -0.63 -6.52 16 6 C -0.17 -1.07 4.99 -27.88 -0.14 -1.20 16 7 C 0.52 4.70 7.28 -10.98 -0.08 4.62 16 8 O -0.53 -6.52 11.62 -11.85 -0.14 -6.65 16 9 N -0.72 -5.82 5.08 -53.72 -0.27 -6.09 16 10 C 0.15 1.62 2.62 -67.85 -0.18 1.44 16 11 H 0.10 1.39 7.58 -51.93 -0.39 0.99 16 12 C -0.13 -1.41 5.58 -26.61 -0.15 -1.56 16 13 C -0.11 -1.45 6.09 -26.65 -0.16 -1.62 16 14 C 0.05 0.75 5.11 -3.83 -0.02 0.73 16 15 N -0.51 -7.81 4.40 -236.12 -1.04 -8.85 16 16 C 0.05 0.73 5.45 -4.97 -0.03 0.70 16 17 C 0.45 10.01 7.46 -10.99 -0.08 9.93 16 18 O -0.56 -14.51 13.90 5.54 0.08 -14.44 16 19 N -0.59 -13.80 5.09 -10.96 -0.06 -13.85 16 20 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 24 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 28 C 0.05 0.57 4.93 -3.84 -0.02 0.55 16 29 H 0.10 1.06 6.41 -52.48 -0.34 0.72 16 30 H 0.09 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.39 4.19 5.74 45.56 0.26 4.46 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.40 2.08 8.60 -40.82 -0.35 1.73 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.11 2.03 5.78 -51.93 -0.30 1.73 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.09 1.26 7.99 -51.93 -0.41 0.85 16 46 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 47 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 50 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -33.52 394.99 -8.48 -42.00 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -7.66 Total: 15.07 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.78 Total: 3.77 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.59 Total: -53.58 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.69 Total: -27.61 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.52 -8.48 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494263984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.462 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds