Wall clock time and date at job start Tue Mar 31 2020 23:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00141 * 2 1 4 4 C 1.52991 * 109.47003 * 119.99965 * 3 2 1 5 5 O 1.42903 * 109.46689 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.46906 * 240.00219 * 3 2 1 7 7 C 1.50707 * 109.47265 * 56.36420 * 6 3 2 8 8 O 1.21275 * 119.99992 * 5.57374 * 7 6 3 9 9 N 1.34777 * 119.99586 * 185.56974 * 7 6 3 10 10 C 1.46506 * 119.99363 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.50573 * 34.91953 * 10 9 7 12 12 C 1.53122 * 109.50184 * 274.80430 * 10 9 7 13 13 C 1.53116 * 109.15872 * 182.40639 * 12 10 9 14 14 C 1.53043 * 109.27978 * 57.65457 * 13 12 10 15 15 N 1.46845 * 109.51928 * 300.82088 * 14 13 12 16 16 C 1.46908 * 110.99759 * 185.83941 * 15 14 13 17 17 C 1.50697 * 109.47142 * 65.78772 * 16 15 14 18 18 O 1.21297 * 120.00300 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00000 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00081 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00113 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00296 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00220 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99745 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47122 * 90.00025 * 24 22 20 26 26 H 1.48494 * 109.46972 * 210.00003 * 24 22 20 27 27 H 1.48496 * 109.46852 * 329.99832 * 24 22 20 28 28 C 1.46842 * 111.19928 * 61.74479 * 15 14 13 29 29 H 1.08003 * 119.99776 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00236 * 179.72728 * 1 2 3 31 31 H 1.07999 * 119.99663 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.46982 * 55.91634 * 4 3 2 33 33 H 1.09003 * 109.46981 * 175.91453 * 4 3 2 34 34 H 1.08998 * 109.47793 * 295.91677 * 4 3 2 35 35 H 0.96695 * 114.00005 * 299.99814 * 5 3 2 36 36 H 1.09002 * 109.46847 * 176.36284 * 6 3 2 37 37 H 1.08993 * 109.47286 * 296.36301 * 6 3 2 38 38 H 0.96995 * 120.00787 * 0.02562 * 9 7 6 39 39 H 1.08995 * 109.52233 * 302.30941 * 12 10 9 40 40 H 1.08995 * 109.52728 * 62.50360 * 12 10 9 41 41 H 1.09001 * 109.50747 * 297.71388 * 13 12 10 42 42 H 1.08998 * 109.50549 * 177.59334 * 13 12 10 43 43 H 1.08996 * 109.46343 * 180.80603 * 14 13 12 44 44 H 1.08997 * 109.44976 * 60.82830 * 14 13 12 45 45 H 1.08993 * 109.47320 * 185.78977 * 16 15 14 46 46 H 1.09002 * 109.47087 * 305.78906 * 16 15 14 47 47 H 0.96997 * 119.99968 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00208 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.45972 * 178.23778 * 28 15 14 50 50 H 1.08996 * 109.46457 * 58.26978 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3861 -1.2493 7 6 2.0872 1.2168 -2.4781 8 8 0.8810 1.1493 -2.3723 9 7 2.6624 1.1404 -3.6946 10 6 1.8303 0.9764 -4.8892 11 1 0.8951 1.5207 -4.7588 12 6 1.5319 -0.5100 -5.1041 13 6 0.7130 -0.6777 -6.3870 14 6 1.4895 -0.0822 -7.5636 15 7 1.7495 1.3406 -7.3101 16 6 2.3713 1.9784 -8.4783 17 6 1.3946 1.9857 -9.6259 18 8 0.2894 1.5063 -9.4848 19 7 1.7495 2.5240 -10.8095 20 6 0.8608 2.5312 -11.8533 21 1 -0.1239 2.1058 -11.7271 22 6 1.2265 3.0866 -13.0734 23 7 0.3744 3.0939 -14.0738 24 14 2.9293 3.8230 -13.2915 25 1 3.8647 2.7738 -13.7706 26 1 2.8688 4.9239 -14.2861 27 1 3.4081 4.3565 -11.9910 28 6 2.5745 1.5239 -6.1092 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9352 -0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 3.6020 0.5185 1.2865 33 1 3.5422 2.2960 1.2133 34 1 2.3120 1.4014 2.1377 35 1 0.5433 2.4033 -0.7642 36 1 3.4386 2.3565 -1.2824 37 1 3.6933 0.5960 -1.2173 38 1 3.6272 1.1941 -3.7792 39 1 2.4684 -1.0601 -5.1953 40 1 0.9640 -0.8938 -4.2567 41 1 -0.2402 -0.1598 -6.2806 42 1 0.5337 -1.7375 -6.5683 43 1 0.9029 -0.1872 -8.4763 44 1 2.4364 -0.6098 -7.6778 45 1 2.6468 3.0031 -8.2292 46 1 3.2637 1.4216 -8.7643 47 1 2.6337 2.9064 -10.9227 48 1 0.6298 3.4813 -14.9256 49 1 2.7759 2.5855 -5.9656 50 1 3.5163 0.9889 -6.2305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494263984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:42 Heat of formation + Delta-G solvation = -121.110728 kcal Electronic energy + Delta-G solvation = -29958.548820 eV Core-core repulsion = 25792.220374 eV Total energy + Delta-G solvation = -4166.328446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.44548 -40.66619 -39.49947 -38.37386 -36.12791 -35.55857 -34.01795 -33.84170 -33.61062 -32.28131 -30.80725 -29.22313 -28.55663 -26.38331 -24.24461 -23.98770 -23.15837 -21.56698 -21.24972 -20.96409 -20.42424 -20.17614 -18.24511 -17.88787 -17.64785 -17.37417 -16.76853 -16.55396 -16.37675 -16.33409 -15.81789 -15.49700 -15.34334 -15.19226 -14.85523 -14.71586 -14.57209 -14.44873 -14.13491 -13.79770 -13.60703 -13.47468 -13.26672 -13.04827 -13.01535 -12.88232 -12.69504 -12.60649 -12.40967 -12.34685 -11.97909 -11.96111 -11.87862 -11.80111 -11.57574 -11.41602 -11.04097 -10.89866 -10.34500 -10.21322 -10.11413 -9.94915 -9.19859 -8.39882 -6.00648 1.30755 1.36498 1.45582 1.47068 1.69922 1.98071 2.04341 2.24301 2.74927 3.16343 3.23223 3.36619 3.65907 3.77549 3.86558 3.87440 3.94106 4.05068 4.10015 4.29361 4.31890 4.37482 4.39958 4.47460 4.48972 4.61365 4.62844 4.66813 4.71719 4.74544 4.89055 4.91753 4.96647 5.00682 5.06750 5.15905 5.25562 5.32466 5.36752 5.48489 5.55392 5.72967 5.90995 5.94242 6.03562 6.21721 6.60534 6.62086 6.73903 6.90559 7.34755 7.41875 8.00065 8.77865 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026381 B = 0.001979 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.133367 B =14145.575371 C =14553.937475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.188 4.188 3 C 0.166 3.834 4 C -0.133 4.133 5 O -0.579 6.579 6 C -0.158 4.158 7 C 0.510 3.490 8 O -0.570 6.570 9 N -0.710 5.710 10 C 0.156 3.844 11 H 0.063 0.937 12 C -0.114 4.114 13 C -0.107 4.107 14 C 0.054 3.946 15 N -0.540 5.540 16 C 0.058 3.942 17 C 0.449 3.551 18 O -0.606 6.606 19 N -0.592 5.592 20 C -0.326 4.326 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.229 1.229 28 C 0.057 3.943 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.382 0.618 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.417 0.583 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.122 0.878 46 H 0.084 0.916 47 H 0.390 0.610 48 H 0.278 0.722 49 H 0.092 0.908 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.721 -4.974 28.764 34.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.207 4.207 3 C 0.125 3.875 4 C -0.190 4.190 5 O -0.390 6.390 6 C -0.197 4.197 7 C 0.298 3.702 8 O -0.450 6.450 9 N -0.362 5.362 10 C 0.050 3.950 11 H 0.081 0.919 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.073 4.073 15 N -0.265 5.265 16 C -0.073 4.073 17 C 0.237 3.763 18 O -0.490 6.490 19 N -0.234 5.234 20 C -0.455 4.455 21 H 0.071 0.929 22 C -0.217 4.217 23 N -0.577 5.577 24 Si 0.786 3.214 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.152 1.152 28 C -0.071 4.071 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.142 0.858 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.235 0.765 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.254 0.746 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.140 0.860 46 H 0.102 0.898 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.111 0.889 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.927 -4.919 29.364 33.765 hybrid contribution 0.553 -0.129 -1.817 1.903 sum 16.480 -5.048 27.547 32.495 Atomic orbital electron populations 1.23670 0.96801 1.01328 0.98991 1.23511 0.96570 0.98875 1.01698 1.20111 0.88148 0.84275 0.94947 1.21746 0.98606 1.03965 0.94660 1.86423 1.51490 1.49822 1.51231 1.22450 0.99385 1.07370 0.90518 1.21172 0.88839 0.74760 0.85417 1.90663 1.16638 1.51094 1.86565 1.45833 1.11214 1.74066 1.05076 1.20640 0.94410 0.95851 0.84061 0.91892 1.21835 1.00543 0.96118 0.96816 1.21442 0.98582 1.00579 0.93988 1.22159 0.99130 0.86790 0.99253 1.61245 1.47619 1.14869 1.02802 1.21793 0.94140 1.02747 0.88607 1.20953 0.89448 0.81658 0.84224 1.90534 1.25091 1.50053 1.83293 1.42024 1.15286 1.55382 1.10733 1.18976 0.97175 1.38583 0.90785 0.92871 1.26151 1.03896 0.97524 0.94083 1.69813 1.38131 1.45992 1.03785 0.85344 0.76910 0.78842 0.80276 1.18086 1.20248 1.15225 1.22280 0.94392 1.02440 0.88014 0.89492 0.88621 0.85788 0.88594 0.90887 0.92684 0.76543 0.86018 0.84781 0.74601 0.90119 0.92498 0.93619 0.90394 0.92331 0.93586 0.86020 0.89799 0.77481 0.91225 0.88933 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 12.65 67.78 0.86 -2.53 16 2 C -0.19 -3.03 7.45 25.65 0.19 -2.83 16 3 C 0.17 2.34 1.08 -11.54 -0.01 2.33 16 4 C -0.13 -1.27 8.82 71.98 0.64 -0.64 16 5 O -0.58 -11.98 11.93 -132.33 -1.58 -13.56 16 6 C -0.16 -1.41 4.99 29.85 0.15 -1.26 16 7 C 0.51 8.07 7.28 87.66 0.64 8.71 16 8 O -0.57 -13.80 11.62 13.64 0.16 -13.64 16 9 N -0.71 -8.91 5.08 -442.27 -2.25 -11.16 16 10 C 0.16 3.07 2.62 45.04 0.12 3.18 16 11 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 12 C -0.11 -2.33 5.58 30.67 0.17 -2.16 16 13 C -0.11 -2.83 6.09 30.65 0.19 -2.65 16 14 C 0.05 1.61 5.11 86.33 0.44 2.05 16 15 N -0.54 -15.48 4.40 -900.94 -3.96 -19.44 16 16 C 0.06 1.68 5.45 85.55 0.47 2.15 16 17 C 0.45 19.95 7.46 87.66 0.65 20.61 16 18 O -0.61 -33.38 13.90 -3.08 -0.04 -33.43 16 19 N -0.59 -27.49 5.09 -306.98 -1.56 -29.05 16 20 C -0.33 -19.04 10.16 84.04 0.85 -18.18 16 21 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 22 C -0.02 -1.01 5.50 84.93 0.47 -0.55 16 23 N -0.94 -56.62 13.96 21.66 0.30 -56.32 16 24 Si 0.97 38.26 27.74 68.60 1.90 40.17 16 25 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 26 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 27 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 28 C 0.06 1.04 4.93 86.33 0.43 1.47 16 29 H 0.09 1.96 6.41 -2.91 -0.02 1.94 16 30 H 0.10 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.12 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.38 8.60 5.74 -74.06 -0.42 8.18 16 36 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.42 2.17 8.60 -92.71 -0.80 1.37 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 2.33 5.78 -2.39 -0.01 2.31 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.12 2.82 7.99 -2.39 -0.02 2.80 16 46 H 0.08 1.91 8.12 -2.39 -0.02 1.90 16 47 H 0.39 14.75 5.76 -92.71 -0.53 14.22 16 48 H 0.28 15.38 8.31 -92.71 -0.77 14.60 16 49 H 0.09 1.49 8.02 -2.38 -0.02 1.47 16 50 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -83.19 394.99 -1.64 -84.84 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -0.86 Total: 41.89 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.24 Total: 9.70 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -7.47 Total: -115.97 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -1.46 Total: -60.62 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.90 Total: 40.17 kcal Total: -83.19 -1.64 -84.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494263984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.275 kcal (2) G-P(sol) polarization free energy of solvation -83.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds