Wall clock time and date at job start Tue Mar 31 2020 23:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50710 * 119.99693 * 2 1 4 4 C 1.53004 * 109.46746 * 240.00220 * 3 2 1 5 5 O 1.42900 * 109.47136 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.46872 * 120.00524 * 3 2 1 7 7 C 1.50697 * 109.47060 * 179.97438 * 6 3 2 8 8 O 1.21288 * 119.99805 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00214 * 179.97438 * 7 6 3 10 10 C 1.46501 * 120.00062 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.53420 * 34.89931 * 10 9 7 12 12 C 1.53117 * 109.50084 * 274.80125 * 10 9 7 13 13 C 1.53124 * 109.15753 * 182.40435 * 12 10 9 14 14 C 1.53036 * 109.27586 * 57.65791 * 13 12 10 15 15 N 1.46849 * 109.52256 * 300.81463 * 14 13 12 16 16 C 1.46901 * 110.99704 * 185.84214 * 15 14 13 17 17 C 1.50701 * 109.46630 * 169.43837 * 16 15 14 18 18 O 1.21292 * 120.00442 * 353.77845 * 17 16 15 19 19 N 1.34776 * 119.99908 * 173.78380 * 17 16 15 20 20 C 1.37102 * 120.00351 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99446 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00104 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99989 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00062 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47033 * 90.00478 * 24 22 20 26 26 H 1.48506 * 109.47156 * 209.99887 * 24 22 20 27 27 H 1.48499 * 109.47338 * 330.00097 * 24 22 20 28 28 C 1.46844 * 111.19514 * 61.74642 * 15 14 13 29 29 H 1.08005 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99815 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00426 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47107 * 299.99932 * 4 3 2 33 33 H 1.08997 * 109.46888 * 60.00172 * 4 3 2 34 34 H 1.09004 * 109.46347 * 179.97438 * 4 3 2 35 35 H 0.96704 * 113.99597 * 60.00064 * 5 3 2 36 36 H 1.08999 * 109.47064 * 59.99902 * 6 3 2 37 37 H 1.08998 * 109.46733 * 299.99944 * 6 3 2 38 38 H 0.96999 * 119.99689 * 0.02562 * 9 7 6 39 39 H 1.08993 * 109.52868 * 302.30990 * 12 10 9 40 40 H 1.09004 * 109.52340 * 62.44129 * 12 10 9 41 41 H 1.08997 * 109.50272 * 177.59639 * 13 12 10 42 42 H 1.09000 * 109.50301 * 297.71581 * 13 12 10 43 43 H 1.09001 * 109.45980 * 180.80653 * 14 13 12 44 44 H 1.08992 * 109.46255 * 60.83439 * 14 13 12 45 45 H 1.08995 * 109.47080 * 289.43447 * 16 15 14 46 46 H 1.08998 * 109.47290 * 49.44012 * 16 15 14 47 47 H 0.97002 * 119.99761 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00266 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.46358 * 58.27099 * 28 15 14 50 50 H 1.09002 * 109.46511 * 178.24680 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3863 -1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6971 2.6910 1.2489 8 8 3.5460 3.4785 0.3389 9 7 4.5392 2.9830 2.2599 10 6 5.2717 4.2518 2.2599 11 1 4.6483 5.0324 1.8238 12 6 6.5538 4.1017 1.4364 13 6 7.3426 5.4131 1.4913 14 6 7.6465 5.7592 2.9507 15 7 6.3881 5.8926 3.6957 16 6 6.6349 6.3598 5.0664 17 6 5.3258 6.7318 5.7136 18 8 4.3035 6.7270 5.0608 19 7 5.2909 7.0700 7.0177 20 6 4.1000 7.4089 7.6065 21 1 3.1898 7.4045 7.0252 22 6 4.0640 7.7571 8.9511 23 7 2.9226 8.0824 9.5153 24 14 5.6381 7.7626 9.9570 25 1 6.2686 9.1050 9.8821 26 1 5.3223 7.4423 11.3723 27 1 6.5747 6.7449 9.4163 28 6 5.6356 4.6316 3.6970 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 3.6514 0.5578 -1.2493 33 1 2.3163 1.3285 -2.1392 34 1 3.4876 2.3305 -1.2495 35 1 0.5438 2.4030 0.7659 36 1 3.6515 0.5577 1.2491 37 1 2.3165 1.3284 2.1391 38 1 4.6602 2.3531 2.9875 39 1 7.1595 3.2949 1.8490 40 1 6.2977 3.8726 0.4020 41 1 8.2771 5.2988 0.9421 42 1 6.7518 6.2120 1.0432 43 1 8.1956 6.6998 2.9940 44 1 8.2488 4.9663 3.3940 45 1 7.1114 5.5654 5.6408 46 1 7.2884 7.2318 5.0409 47 1 6.1084 7.0736 7.5399 48 1 2.8974 8.3251 10.4541 49 1 6.2474 3.8440 4.1369 50 1 4.7242 4.7531 4.2823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494263986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:47 Heat of formation + Delta-G solvation = -89.780790 kcal Electronic energy + Delta-G solvation = -30168.744763 eV Core-core repulsion = 26003.774885 eV Total energy + Delta-G solvation = -4164.969878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.40127 -39.31758 -38.20587 -37.43471 -34.72367 -33.96423 -33.21530 -32.64191 -31.66267 -31.52725 -29.88456 -27.89476 -27.55824 -24.63812 -23.50269 -22.88711 -22.27192 -20.41345 -19.90188 -19.80190 -19.35018 -18.28233 -17.53940 -16.63778 -16.48322 -15.98909 -15.75060 -15.39000 -15.12565 -14.90402 -14.82277 -14.63719 -14.20740 -13.85543 -13.59844 -13.54022 -13.36196 -13.07191 -12.99532 -12.60204 -12.48488 -12.39779 -12.28317 -11.95589 -11.88112 -11.73088 -11.61801 -11.34014 -11.28538 -11.18102 -10.89290 -10.67437 -10.61116 -10.53884 -10.38960 -9.98738 -9.75909 -9.55446 -9.52654 -8.98858 -8.57578 -8.19040 -8.00870 -6.32127 -3.83563 1.89037 2.67038 3.00217 3.04994 3.05607 3.13476 3.72839 3.93283 4.07875 4.09204 4.41634 4.47941 4.71683 4.73299 4.80013 4.89528 4.94041 4.97185 5.04778 5.16514 5.21085 5.22235 5.34725 5.42101 5.50282 5.51805 5.57635 5.64061 5.67218 5.68814 5.72736 5.85927 5.89797 5.92984 6.04645 6.10466 6.15704 6.23446 6.28330 6.38086 6.41417 6.53800 7.11826 7.27167 7.50585 7.54426 7.57659 8.13577 8.29036 8.59347 8.94492 9.41454 9.82678 10.81031 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.002524 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.721118 B =11091.976448 C =12768.163686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.189 4.189 3 C 0.177 3.823 4 C -0.147 4.147 5 O -0.538 6.538 6 C -0.167 4.167 7 C 0.515 3.485 8 O -0.514 6.514 9 N -0.727 5.727 10 C 0.152 3.848 11 H 0.100 0.900 12 C -0.128 4.128 13 C -0.112 4.112 14 C 0.053 3.947 15 N -0.511 5.511 16 C 0.045 3.955 17 C 0.450 3.550 18 O -0.556 6.556 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.051 3.949 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.370 0.630 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.396 0.604 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.030 0.970 45 H 0.047 0.953 46 H 0.093 0.907 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.026 0.974 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.594 -17.172 -15.029 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.207 4.207 3 C 0.136 3.864 4 C -0.204 4.204 5 O -0.343 6.343 6 C -0.208 4.208 7 C 0.301 3.699 8 O -0.389 6.389 9 N -0.379 5.379 10 C 0.047 3.953 11 H 0.118 0.882 12 C -0.167 4.167 13 C -0.151 4.151 14 C -0.075 4.075 15 N -0.236 5.236 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.437 6.437 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.078 4.078 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.218 0.782 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.229 0.771 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.044 0.956 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.675 -16.021 -16.749 24.120 hybrid contribution 1.491 -1.186 2.547 3.181 sum 8.166 -17.207 -14.202 23.759 Atomic orbital electron populations 1.23897 0.96072 1.02483 0.99182 1.23612 0.96773 0.98744 1.01590 1.19830 0.88063 0.84115 0.94422 1.21936 0.98853 1.04218 0.95362 1.86733 1.50064 1.48749 1.48718 1.22412 1.00529 0.96896 1.00921 1.20351 0.79102 0.88336 0.82143 1.90694 1.63685 1.49600 1.34961 1.46028 1.45254 1.21209 1.25397 1.20899 0.92750 0.85876 0.95771 0.88179 1.21965 0.96285 0.97687 1.00736 1.21517 0.99998 0.97745 0.95825 1.22169 0.90571 1.00560 0.94175 1.61329 1.19096 1.29468 1.13669 1.21889 0.97377 1.00469 0.88901 1.19670 0.90098 0.84196 0.82451 1.90567 1.34831 1.55900 1.62405 1.42232 1.09625 1.62285 1.09052 1.19423 0.87263 1.42454 0.94105 0.86276 1.25036 0.97098 0.97487 0.96564 1.69623 1.24527 1.45116 1.12905 0.86678 0.83127 0.78804 0.80788 1.19592 1.20224 1.19586 1.22351 1.00072 0.89373 0.95981 0.87591 0.88245 0.86742 0.92050 0.92248 0.88683 0.78238 0.88193 0.88562 0.77062 0.92471 0.91455 0.91361 0.90569 0.90508 0.95185 0.93491 0.88851 0.79773 0.91624 0.95572 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 13.93 29.01 0.40 -0.92 16 2 C -0.19 -1.45 8.77 -36.02 -0.32 -1.77 16 3 C 0.18 1.72 0.94 -91.77 -0.09 1.63 16 4 C -0.15 -1.52 8.50 37.16 0.32 -1.20 16 5 O -0.54 -6.43 10.85 -53.47 -0.58 -7.01 16 6 C -0.17 -1.43 4.93 -27.88 -0.14 -1.57 16 7 C 0.51 6.31 7.36 -10.99 -0.08 6.22 16 8 O -0.51 -8.31 12.62 -12.69 -0.16 -8.47 16 9 N -0.73 -8.28 5.08 -53.73 -0.27 -8.56 16 10 C 0.15 2.08 2.62 -67.85 -0.18 1.90 16 11 H 0.10 1.75 7.58 -51.93 -0.39 1.35 16 12 C -0.13 -1.47 5.58 -26.61 -0.15 -1.62 16 13 C -0.11 -1.24 6.09 -26.65 -0.16 -1.40 16 14 C 0.05 0.63 5.46 -3.83 -0.02 0.61 16 15 N -0.51 -7.97 4.35 -236.12 -1.03 -9.00 16 16 C 0.05 0.73 5.45 -4.97 -0.03 0.71 16 17 C 0.45 10.02 7.31 -10.99 -0.08 9.94 16 18 O -0.56 -14.66 14.28 5.55 0.08 -14.58 16 19 N -0.59 -13.86 5.09 -10.96 -0.06 -13.91 16 20 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 24 Si 0.88 19.13 27.73 -169.99 -4.71 14.41 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 28 C 0.05 0.76 4.59 -3.84 -0.02 0.74 16 29 H 0.11 0.81 6.41 -52.48 -0.34 0.47 16 30 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16 31 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.24 5.51 -51.93 -0.29 0.96 16 35 H 0.37 3.31 8.05 45.56 0.37 3.68 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 3.48 8.60 -40.82 -0.35 3.13 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 46 H 0.09 1.33 7.98 -51.93 -0.41 0.92 16 47 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.10 1.92 6.05 -51.93 -0.31 1.61 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -35.31 397.19 -8.18 -43.49 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -7.43 Total: 16.83 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.78 Total: 5.64 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.58 Total: -56.30 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.66 Total: -30.06 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.31 -8.18 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494263986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.290 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds