Wall clock time and date at job start Tue Mar 31 2020 23:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50710 * 119.99693 * 2 1 4 4 C 1.53004 * 109.46746 * 240.00220 * 3 2 1 5 5 O 1.42900 * 109.47136 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.46872 * 120.00524 * 3 2 1 7 7 C 1.50697 * 109.47060 * 179.97438 * 6 3 2 8 8 O 1.21288 * 119.99805 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00214 * 179.97438 * 7 6 3 10 10 C 1.46501 * 120.00062 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.53420 * 34.89931 * 10 9 7 12 12 C 1.53117 * 109.50084 * 274.80125 * 10 9 7 13 13 C 1.53124 * 109.15753 * 182.40435 * 12 10 9 14 14 C 1.53036 * 109.27586 * 57.65791 * 13 12 10 15 15 N 1.46849 * 109.52256 * 300.81463 * 14 13 12 16 16 C 1.46901 * 110.99704 * 185.84214 * 15 14 13 17 17 C 1.50701 * 109.46630 * 169.43837 * 16 15 14 18 18 O 1.21292 * 120.00442 * 353.77845 * 17 16 15 19 19 N 1.34776 * 119.99908 * 173.78380 * 17 16 15 20 20 C 1.37102 * 120.00351 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99446 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00104 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99989 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00062 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47033 * 90.00478 * 24 22 20 26 26 H 1.48506 * 109.47156 * 209.99887 * 24 22 20 27 27 H 1.48499 * 109.47338 * 330.00097 * 24 22 20 28 28 C 1.46844 * 111.19514 * 61.74642 * 15 14 13 29 29 H 1.08005 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99815 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00426 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47107 * 299.99932 * 4 3 2 33 33 H 1.08997 * 109.46888 * 60.00172 * 4 3 2 34 34 H 1.09004 * 109.46347 * 179.97438 * 4 3 2 35 35 H 0.96704 * 113.99597 * 60.00064 * 5 3 2 36 36 H 1.08999 * 109.47064 * 59.99902 * 6 3 2 37 37 H 1.08998 * 109.46733 * 299.99944 * 6 3 2 38 38 H 0.96999 * 119.99689 * 0.02562 * 9 7 6 39 39 H 1.08993 * 109.52868 * 302.30990 * 12 10 9 40 40 H 1.09004 * 109.52340 * 62.44129 * 12 10 9 41 41 H 1.08997 * 109.50272 * 177.59639 * 13 12 10 42 42 H 1.09000 * 109.50301 * 297.71581 * 13 12 10 43 43 H 1.09001 * 109.45980 * 180.80653 * 14 13 12 44 44 H 1.08992 * 109.46255 * 60.83439 * 14 13 12 45 45 H 1.08995 * 109.47080 * 289.43447 * 16 15 14 46 46 H 1.08998 * 109.47290 * 49.44012 * 16 15 14 47 47 H 0.97002 * 119.99761 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00266 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.46358 * 58.27099 * 28 15 14 50 50 H 1.09002 * 109.46511 * 178.24680 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3863 -1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6971 2.6910 1.2489 8 8 3.5460 3.4785 0.3389 9 7 4.5392 2.9830 2.2599 10 6 5.2717 4.2518 2.2599 11 1 4.6483 5.0324 1.8238 12 6 6.5538 4.1017 1.4364 13 6 7.3426 5.4131 1.4913 14 6 7.6465 5.7592 2.9507 15 7 6.3881 5.8926 3.6957 16 6 6.6349 6.3598 5.0664 17 6 5.3258 6.7318 5.7136 18 8 4.3035 6.7270 5.0608 19 7 5.2909 7.0700 7.0177 20 6 4.1000 7.4089 7.6065 21 1 3.1898 7.4045 7.0252 22 6 4.0640 7.7571 8.9511 23 7 2.9226 8.0824 9.5153 24 14 5.6381 7.7626 9.9570 25 1 6.2686 9.1050 9.8821 26 1 5.3223 7.4423 11.3723 27 1 6.5747 6.7449 9.4163 28 6 5.6356 4.6316 3.6970 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 3.6514 0.5578 -1.2493 33 1 2.3163 1.3285 -2.1392 34 1 3.4876 2.3305 -1.2495 35 1 0.5438 2.4030 0.7659 36 1 3.6515 0.5577 1.2491 37 1 2.3165 1.3284 2.1391 38 1 4.6602 2.3531 2.9875 39 1 7.1595 3.2949 1.8490 40 1 6.2977 3.8726 0.4020 41 1 8.2771 5.2988 0.9421 42 1 6.7518 6.2120 1.0432 43 1 8.1956 6.6998 2.9940 44 1 8.2488 4.9663 3.3940 45 1 7.1114 5.5654 5.6408 46 1 7.2884 7.2318 5.0409 47 1 6.1084 7.0736 7.5399 48 1 2.8974 8.3251 10.4541 49 1 6.2474 3.8440 4.1369 50 1 4.7242 4.7531 4.2823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494263986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:46 Heat of formation + Delta-G solvation = -119.485329 kcal Electronic energy + Delta-G solvation = -30170.032849 eV Core-core repulsion = 26003.774885 eV Total energy + Delta-G solvation = -4166.257964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.39305 -40.62469 -39.49314 -38.55635 -36.09014 -35.67878 -34.01226 -33.81201 -33.61557 -32.25846 -30.85262 -29.17340 -28.55497 -26.38587 -24.38175 -24.13864 -23.15819 -21.45241 -21.22488 -20.80844 -20.57128 -20.16810 -18.37842 -17.74432 -17.60811 -17.31615 -16.82150 -16.61618 -16.32864 -16.12243 -16.00917 -15.51382 -15.44692 -15.38183 -14.81689 -14.69019 -14.58693 -14.48556 -14.10714 -13.89942 -13.78153 -13.30818 -13.21050 -13.13939 -13.04108 -12.79864 -12.62757 -12.48143 -12.40471 -12.34867 -12.01732 -11.98765 -11.83885 -11.75144 -11.57009 -11.44850 -11.18746 -10.54771 -10.37884 -10.32469 -10.23074 -9.98357 -9.18933 -8.40394 -6.01291 1.30133 1.30681 1.36598 1.45093 1.72267 1.97833 2.11568 2.23844 2.69535 3.15895 3.25237 3.36299 3.63124 3.75327 3.81363 3.86613 4.04707 4.06767 4.11946 4.20508 4.26597 4.31614 4.39860 4.39993 4.52909 4.58387 4.65747 4.69927 4.71746 4.74162 4.86640 4.92981 4.96829 5.00246 5.08053 5.14583 5.24231 5.31797 5.41084 5.53275 5.56601 5.65571 5.82215 5.91212 6.03379 6.23239 6.60457 6.62041 6.82324 6.90130 7.36980 7.41537 7.99935 8.77515 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.002524 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.721118 B =11091.976448 C =12768.163686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.187 4.187 3 C 0.169 3.831 4 C -0.146 4.146 5 O -0.567 6.567 6 C -0.158 4.158 7 C 0.508 3.492 8 O -0.561 6.561 9 N -0.720 5.720 10 C 0.158 3.842 11 H 0.048 0.952 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.056 3.944 15 N -0.542 5.542 16 C 0.058 3.942 17 C 0.449 3.551 18 O -0.607 6.607 19 N -0.592 5.592 20 C -0.326 4.326 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.276 1.276 27 H -0.229 1.229 28 C 0.059 3.941 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.378 0.622 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.411 0.589 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.124 0.876 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.057 0.943 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.113 -19.785 -14.177 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.205 4.205 3 C 0.128 3.872 4 C -0.203 4.203 5 O -0.374 6.374 6 C -0.197 4.197 7 C 0.296 3.704 8 O -0.439 6.439 9 N -0.373 5.373 10 C 0.052 3.948 11 H 0.066 0.934 12 C -0.155 4.155 13 C -0.149 4.149 14 C -0.071 4.071 15 N -0.268 5.268 16 C -0.073 4.073 17 C 0.237 3.763 18 O -0.491 6.491 19 N -0.235 5.235 20 C -0.455 4.455 21 H 0.070 0.930 22 C -0.215 4.215 23 N -0.578 5.578 24 Si 0.786 3.214 25 H -0.183 1.183 26 H -0.201 1.201 27 H -0.152 1.152 28 C -0.069 4.069 29 H 0.114 0.886 30 H 0.135 0.865 31 H 0.156 0.844 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.227 0.773 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.247 0.753 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.142 0.858 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.224 -18.667 -15.898 26.966 hybrid contribution -0.070 -0.336 2.156 2.183 sum 11.153 -19.003 -13.742 25.969 Atomic orbital electron populations 1.24034 0.96245 1.02889 0.98770 1.23596 0.96754 0.98297 1.01894 1.19999 0.88031 0.84604 0.94527 1.21916 0.99128 1.03609 0.95622 1.86702 1.50870 1.50292 1.49549 1.22426 1.00781 0.95535 1.01002 1.21086 0.78747 0.89231 0.81357 1.90690 1.65053 1.51374 1.36766 1.45967 1.44907 1.20612 1.25769 1.20656 0.93258 0.85564 0.95303 0.93400 1.21869 0.95147 0.98911 0.99612 1.21544 1.00863 0.96501 0.96015 1.22267 0.88906 1.02350 0.93585 1.61243 1.21653 1.30171 1.13735 1.21822 0.93387 1.02860 0.89240 1.20990 0.91982 0.81608 0.81750 1.90559 1.37728 1.57234 1.63569 1.42044 1.08723 1.62912 1.09779 1.18967 0.87230 1.44720 0.94593 0.92982 1.26138 1.02073 0.95915 0.97405 1.69815 1.28078 1.46186 1.13691 0.85349 0.77633 0.80440 0.77969 1.18261 1.20115 1.15172 1.22156 0.98631 0.90296 0.95845 0.88584 0.86521 0.84371 0.89353 0.93064 0.91787 0.77313 0.84692 0.87042 0.75263 0.89863 0.92567 0.88246 0.93095 0.89061 0.92509 0.89912 0.85841 0.77485 0.91196 0.92534 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 13.93 67.78 0.94 -1.54 16 2 C -0.19 -2.54 8.77 25.65 0.23 -2.32 16 3 C 0.17 3.21 0.94 -11.54 -0.01 3.19 16 4 C -0.15 -3.02 8.50 71.98 0.61 -2.41 16 5 O -0.57 -14.32 10.85 -131.54 -1.43 -15.75 16 6 C -0.16 -2.49 4.93 29.85 0.15 -2.34 16 7 C 0.51 12.68 7.36 87.66 0.64 13.32 16 8 O -0.56 -19.37 12.62 14.39 0.18 -19.19 16 9 N -0.72 -16.30 5.08 -442.28 -2.25 -18.55 16 10 C 0.16 4.39 2.62 45.04 0.12 4.51 16 11 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 12 C -0.12 -2.50 5.58 30.67 0.17 -2.33 16 13 C -0.11 -2.21 6.09 30.65 0.19 -2.02 16 14 C 0.06 1.11 5.46 86.33 0.47 1.58 16 15 N -0.54 -16.03 4.35 -900.94 -3.92 -19.95 16 16 C 0.06 1.71 5.45 85.56 0.47 2.18 16 17 C 0.45 20.11 7.31 87.66 0.64 20.75 16 18 O -0.61 -33.98 14.28 -3.07 -0.04 -34.02 16 19 N -0.59 -27.60 5.09 -306.99 -1.56 -29.16 16 20 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 21 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 22 C -0.02 -0.94 5.50 84.92 0.47 -0.48 16 23 N -0.94 -56.65 13.96 21.66 0.30 -56.35 16 24 Si 0.97 38.27 27.73 68.60 1.90 40.17 16 25 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 26 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.23 -7.46 6.52 99.48 0.65 -6.81 16 28 C 0.06 1.74 4.59 86.33 0.40 2.14 16 29 H 0.10 1.48 6.41 -2.91 -0.02 1.46 16 30 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.76 5.51 -2.38 -0.01 1.75 16 35 H 0.38 7.34 8.05 -74.05 -0.60 6.75 16 36 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.41 6.64 8.60 -92.71 -0.80 5.84 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.58 8.01 -2.39 -0.02 1.56 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 46 H 0.12 2.97 7.98 -2.39 -0.02 2.95 16 47 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 48 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 49 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 50 H 0.05 2.15 6.05 -2.39 -0.01 2.14 16 Total: -1.00 -87.84 397.19 -1.50 -89.33 By element: Atomic # 1 Polarization: 48.46 SS G_CDS: -1.02 Total: 47.44 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 6.33 Total: 16.02 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -7.42 Total: -124.02 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: -1.29 Total: -68.96 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -87.84 -1.50 -89.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494263986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.152 kcal (2) G-P(sol) polarization free energy of solvation -87.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds