Wall clock time and date at job start Tue Mar 31 2020 22:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47501 * 2 1 4 4 C 1.52997 * 109.47238 * 120.00087 * 2 1 3 5 5 H 1.08997 * 109.47346 * 184.99816 * 4 2 1 6 6 C 1.52999 * 109.47380 * 304.99994 * 4 2 1 7 7 N 1.46495 * 109.47322 * 174.99671 * 6 4 2 8 8 C 1.34776 * 120.00023 * 179.97438 * 7 6 4 9 9 O 1.21737 * 120.00294 * 0.02562 * 8 7 6 10 10 C 1.41797 * 119.99968 * 180.02562 * 8 7 6 11 11 C 1.33458 * 118.78509 * 180.02562 * 10 8 7 12 12 O 1.34351 * 123.07760 * 180.41200 * 11 10 8 13 13 C 1.45351 * 117.48063 * 343.67324 * 12 11 10 14 14 C 1.53429 * 108.26962 * 47.46142 * 13 12 11 15 15 C 1.50409 * 118.78716 * 359.97438 * 10 8 7 16 16 N 1.46904 * 109.47009 * 65.00025 * 4 2 1 17 17 C 1.46899 * 111.00064 * 85.84961 * 16 4 2 18 18 C 1.50700 * 109.47218 * 174.63076 * 17 16 4 19 19 O 1.21299 * 119.99770 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00450 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00222 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00050 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99865 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99761 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99701 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47127 * 60.00300 * 25 23 21 27 27 H 1.48507 * 109.46711 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47241 * 299.99971 * 25 23 21 29 29 H 1.09003 * 109.46906 * 299.99985 * 1 2 3 30 30 H 1.09002 * 109.47158 * 59.99787 * 1 2 3 31 31 H 1.09004 * 109.47537 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46906 * 240.00015 * 2 1 3 33 33 H 1.08996 * 109.47524 * 182.74927 * 3 2 1 34 34 H 1.08997 * 109.47064 * 302.75300 * 3 2 1 35 35 H 1.08999 * 109.46840 * 62.74615 * 3 2 1 36 36 H 1.09004 * 109.46790 * 54.99696 * 6 4 2 37 37 H 1.09003 * 109.46872 * 294.99972 * 6 4 2 38 38 H 0.97000 * 120.00263 * 0.02562 * 7 6 4 39 39 H 1.08005 * 118.46163 * 0.39547 * 11 10 8 40 40 H 1.08997 * 109.70461 * 167.16825 * 13 12 11 41 41 H 1.09003 * 109.70691 * 287.74386 * 13 12 11 42 42 H 1.09002 * 109.68115 * 177.60820 * 14 13 12 43 43 H 1.09003 * 109.70948 * 57.00327 * 14 13 12 44 44 H 1.09001 * 109.45797 * 282.35891 * 15 10 8 45 45 H 1.09005 * 109.45667 * 42.32423 * 15 10 8 46 46 H 1.00897 * 111.00282 * 321.89482 * 16 4 2 47 47 H 1.08995 * 109.47374 * 294.62767 * 17 16 4 48 48 H 1.08995 * 109.47176 * 54.63336 * 17 16 4 49 49 H 0.97001 * 119.99315 * 359.97438 * 20 18 17 50 50 H 0.97004 * 119.99444 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6444 1.2951 6 6 1.4300 -0.0763 2.4953 7 7 1.8227 -0.8398 3.6823 8 6 1.3995 -0.4537 4.9023 9 8 0.6906 0.5291 5.0179 10 6 1.7801 -1.1924 6.0513 11 6 1.3469 -0.7888 7.2473 12 8 1.6609 -1.4186 8.3918 13 6 2.1924 -2.7677 8.2909 14 6 3.2921 -2.7727 7.2211 15 6 2.6562 -2.4025 5.8770 16 7 1.6513 -2.1367 1.1903 17 6 2.6365 -2.9222 0.4349 18 6 2.2759 -4.3836 0.5073 19 8 1.2949 -4.7362 1.1276 20 7 3.0438 -5.2989 -0.1163 21 6 2.7154 -6.6284 -0.0509 22 1 1.8415 -6.9422 0.5007 23 6 3.5075 -7.5721 -0.6934 24 7 4.5710 -7.1901 -1.3641 25 14 3.0604 -9.3836 -0.6037 26 1 1.7111 -9.5899 -1.1883 27 1 4.0567 -10.1776 -1.3668 28 1 3.0579 -9.8231 0.8147 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1289 1.4428 -0.0493 34 1 1.6370 1.9703 -0.8643 35 1 1.7175 1.9418 0.9136 36 1 0.3434 -0.0736 2.4081 37 1 1.7896 0.9486 2.5870 38 1 2.3879 -1.6227 3.5903 39 1 0.7143 0.0851 7.2976 40 1 2.6116 -3.0703 9.2505 41 1 1.3970 -3.4556 8.0041 42 1 3.7367 -3.7659 7.1561 43 1 4.0591 -2.0423 7.4788 44 1 2.0548 -3.2374 5.5173 45 1 3.4406 -2.1816 5.1530 46 1 0.7276 -2.2421 0.7984 47 1 2.6374 -2.5993 -0.6061 48 1 3.6273 -2.7708 0.8632 49 1 3.8284 -5.0169 -0.6120 50 1 5.1238 -7.8489 -1.8130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496536253.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:30 Heat of formation + Delta-G solvation = -107.952162 kcal Electronic energy + Delta-G solvation = -30149.589394 eV Core-core repulsion = 25983.831546 eV Total energy + Delta-G solvation = -4165.757848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.68306 -39.41033 -38.56627 -37.64595 -34.56585 -34.07692 -33.76519 -33.08677 -31.75118 -31.23386 -28.59652 -27.43711 -26.24831 -25.89445 -24.55764 -23.69069 -22.93496 -21.23318 -19.70318 -19.32191 -18.79132 -17.98623 -17.82900 -16.86149 -16.06119 -15.97303 -15.82392 -15.29853 -15.25250 -15.05931 -14.54535 -14.52029 -14.21103 -14.03414 -13.91174 -13.84970 -13.42323 -13.39809 -13.17431 -12.94173 -12.73293 -12.38439 -12.27843 -12.00518 -11.83696 -11.58334 -11.53149 -11.49894 -11.18879 -11.12050 -11.01355 -10.88412 -10.84657 -10.55655 -10.47305 -10.24500 -9.76311 -9.53060 -8.89951 -8.53480 -8.50361 -8.07474 -7.99101 -6.45105 -3.85957 1.36543 3.00785 3.17039 3.23136 3.27249 3.46763 3.54477 3.87490 4.04146 4.28094 4.44749 4.52438 4.66066 4.68390 4.73515 4.90847 4.98391 5.03493 5.12143 5.15621 5.22264 5.24281 5.27423 5.33202 5.44452 5.46128 5.54469 5.67894 5.71807 5.75660 5.76974 5.81358 5.87700 5.89453 5.94542 5.97167 5.98652 6.11369 6.14073 6.23477 6.25213 6.66695 7.06187 7.14003 7.51608 7.58765 7.78452 8.02679 8.44551 8.58035 9.14711 9.51039 10.02687 10.72518 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008045 B = 0.003199 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.667772 B = 8751.090223 C =11650.163182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.147 4.147 4 C 0.076 3.924 5 H 0.083 0.917 6 C 0.131 3.869 7 N -0.709 5.709 8 C 0.570 3.430 9 O -0.574 6.574 10 C -0.309 4.309 11 C 0.151 3.849 12 O -0.314 6.314 13 C 0.052 3.948 14 C -0.156 4.156 15 C -0.076 4.076 16 N -0.662 5.662 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.581 6.581 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.408 0.592 39 H 0.178 0.822 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.352 0.648 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 14.158 10.299 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.205 4.205 4 C -0.035 4.035 5 H 0.101 0.899 6 C 0.007 3.993 7 N -0.361 5.361 8 C 0.361 3.639 9 O -0.457 6.457 10 C -0.313 4.313 11 C 0.083 3.917 12 O -0.225 6.225 13 C -0.022 4.022 14 C -0.194 4.194 15 C -0.113 4.113 16 N -0.294 5.294 17 C -0.084 4.084 18 C 0.226 3.774 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.245 0.755 39 H 0.195 0.805 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.174 0.826 47 H 0.062 0.938 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.164 14.341 11.488 18.411 hybrid contribution 0.566 -1.098 -1.725 2.121 sum -0.598 13.243 9.763 16.463 Atomic orbital electron populations 1.21962 0.94851 1.02253 1.02174 1.21754 0.96729 0.97121 0.98807 1.21859 1.00935 0.95630 1.02075 1.21921 0.99999 0.88334 0.93221 0.89894 1.21415 1.00309 0.94202 0.83415 1.45735 1.53011 1.31785 1.05524 1.16559 0.79839 0.84040 0.83499 1.90768 1.39522 1.28416 1.87002 1.20086 1.11665 1.05084 0.94501 1.22916 0.90521 0.94232 0.84025 1.86250 1.76856 1.29738 1.29621 1.23559 0.96662 0.80986 1.00984 1.22177 0.98199 1.03689 0.95296 1.20290 0.98053 0.95543 0.97423 1.60177 1.06070 1.05767 1.57434 1.21727 0.96526 0.93670 0.96452 1.19807 0.86227 0.86668 0.84717 1.90535 1.29063 1.81082 1.45818 1.41859 1.25616 1.06438 1.46144 1.19642 1.11053 0.81381 1.30867 0.88012 1.25249 0.95582 1.00574 0.96460 1.69602 1.15535 1.35504 1.33697 0.85933 0.78168 0.81738 0.78480 1.19922 1.20974 1.19891 0.91819 0.92525 0.92228 0.90713 0.92630 0.92663 0.92183 0.91175 0.91448 0.75470 0.80514 0.87453 0.90660 0.89333 0.90510 0.90005 0.90245 0.82606 0.93773 0.89726 0.77526 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.52 37.16 0.32 -1.26 16 2 C -0.12 -1.24 2.79 -90.63 -0.25 -1.49 16 3 C -0.15 -1.27 9.01 37.16 0.33 -0.94 16 4 C 0.08 0.87 1.97 -67.71 -0.13 0.73 16 5 H 0.08 0.90 7.70 -51.93 -0.40 0.50 16 6 C 0.13 1.60 4.67 -4.04 -0.02 1.59 16 7 N -0.71 -9.37 5.30 -63.18 -0.33 -9.71 16 8 C 0.57 8.23 7.53 -14.90 -0.11 8.12 16 9 O -0.57 -9.80 15.92 5.16 0.08 -9.72 16 10 C -0.31 -3.80 5.70 -105.08 -0.60 -4.40 16 11 C 0.15 1.72 10.46 29.06 0.30 2.02 16 12 O -0.31 -3.27 10.48 -14.89 -0.16 -3.43 16 13 C 0.05 0.42 7.15 37.38 0.27 0.69 16 14 C -0.16 -1.31 6.23 -26.39 -0.16 -1.47 16 15 C -0.08 -0.81 5.09 -27.90 -0.14 -0.95 16 16 N -0.66 -9.63 5.23 -108.00 -0.56 -10.19 16 17 C 0.05 0.79 5.99 -4.98 -0.03 0.76 16 18 C 0.44 9.86 7.83 -10.99 -0.09 9.77 16 19 O -0.58 -15.13 15.89 5.54 0.09 -15.04 16 20 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 21 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 22 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 25 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 29 H 0.06 0.65 6.23 -51.93 -0.32 0.32 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 32 H 0.07 0.80 7.50 -51.93 -0.39 0.41 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 36 H 0.07 0.94 6.06 -51.93 -0.31 0.62 16 37 H 0.07 0.79 6.75 -51.93 -0.35 0.44 16 38 H 0.41 5.31 6.25 -40.82 -0.26 5.05 16 39 H 0.18 1.96 7.21 -52.48 -0.38 1.58 16 40 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.08 0.82 7.15 -51.93 -0.37 0.45 16 46 H 0.35 5.50 6.45 -39.29 -0.25 5.25 16 47 H 0.04 0.65 7.54 -51.93 -0.39 0.26 16 48 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 49 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 50 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -32.13 398.39 -7.52 -39.65 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -7.73 Total: 18.53 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.56 Total: 5.38 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.23 Total: -57.02 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: 0.01 Total: -28.18 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.13 -7.52 -39.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496536253.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.304 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds