Wall clock time and date at job start Tue Mar 31 2020 23:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 119.99777 * 2 1 4 4 O 1.21281 * 120.00250 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00209 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47476 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47582 * 59.99570 * 6 5 3 8 8 O 1.42904 * 109.46698 * 299.99500 * 6 5 3 9 9 C 1.53005 * 109.47338 * 180.02562 * 6 5 3 10 10 C 1.52997 * 117.49415 * 253.62005 * 9 6 5 11 11 C 1.52999 * 60.00119 * 252.50736 * 10 9 6 12 12 C 1.46499 * 120.00429 * 180.02562 * 2 1 3 13 13 C 1.53935 * 113.73257 * 321.23094 * 12 2 1 14 14 N 1.48193 * 86.10337 * 90.77914 * 13 12 2 15 15 C 1.46894 * 111.06841 * 137.52059 * 14 13 12 16 16 C 1.50700 * 109.47159 * 70.57068 * 15 14 13 17 17 O 1.21293 * 120.00121 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99788 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99947 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99748 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00139 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99879 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00004 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47154 * 60.00217 * 23 21 19 25 25 H 1.48502 * 109.47214 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47100 * 300.00320 * 23 21 19 27 27 C 1.47967 * 90.79407 * 24.60047 * 14 13 12 28 28 H 1.09005 * 109.47138 * 269.99436 * 1 2 3 29 29 H 1.08993 * 109.47587 * 29.99946 * 1 2 3 30 30 H 1.08999 * 109.47189 * 150.00247 * 1 2 3 31 31 H 1.09006 * 109.47064 * 299.99915 * 5 3 2 32 32 H 1.09001 * 109.47474 * 59.99912 * 5 3 2 33 33 H 1.09005 * 109.46977 * 59.99875 * 7 6 5 34 34 H 1.08999 * 109.47764 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.47404 * 300.00680 * 7 6 5 36 36 H 0.96695 * 114.00143 * 299.99771 * 8 6 5 37 37 H 1.08994 * 115.55227 * 39.32254 * 9 6 5 38 38 H 1.08999 * 117.50308 * 359.97438 * 10 9 6 39 39 H 1.09005 * 117.49832 * 145.01712 * 10 9 6 40 40 H 1.08999 * 117.49799 * 252.51535 * 11 10 9 41 41 H 1.08994 * 117.49779 * 107.48843 * 11 10 9 42 42 H 1.09002 * 112.93874 * 189.66421 * 12 2 1 43 43 H 1.09000 * 113.76137 * 205.06289 * 13 12 2 44 44 H 1.09002 * 113.75885 * 336.42988 * 13 12 2 45 45 H 1.08999 * 109.46814 * 190.56779 * 15 14 13 46 46 H 1.08996 * 109.47288 * 310.56415 * 15 14 13 47 47 H 0.96997 * 120.00477 * 359.97438 * 18 16 15 48 48 H 0.97005 * 119.99760 * 179.97438 * 22 21 19 49 49 H 1.09001 * 113.75575 * 221.08036 * 27 14 13 50 50 H 1.08993 * 113.75515 * 89.72269 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3794 3.6353 -0.0002 7 6 3.2582 3.5543 -1.2500 8 8 3.2018 3.5596 1.1661 9 6 1.6144 4.9603 0.0011 10 6 1.5912 5.7637 -1.3008 11 6 2.4318 6.2482 -0.1177 12 6 2.1975 -1.2687 -0.0006 13 6 1.5559 -2.3550 0.8813 14 7 0.8109 -2.7591 -0.3343 15 6 0.7705 -4.2215 -0.4671 16 6 -0.1309 -4.7976 0.5943 17 8 -0.6848 -4.0623 1.3841 18 7 -0.3215 -6.1299 0.6660 19 6 -1.1412 -6.6541 1.6320 20 1 -1.6343 -5.9994 2.3352 21 6 -1.3382 -8.0276 1.7056 22 7 -0.7385 -8.8241 0.8496 23 14 -2.4554 -8.7417 3.0213 24 1 -3.8251 -8.1910 2.8599 25 1 -2.4968 -10.2200 2.8866 26 1 -1.9322 -8.3818 4.3637 27 6 1.8625 -2.1771 -1.1973 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7583 2.5302 -0.8892 32 1 0.7589 2.5299 0.8908 33 1 2.6309 3.6120 -2.1396 34 1 3.9668 4.3826 -1.2503 35 1 3.8032 2.6104 -1.2505 36 1 2.7103 3.6050 1.9975 37 1 0.7212 4.9869 0.6252 38 1 2.1213 5.3486 -2.1580 39 1 0.6825 6.3190 -1.5334 40 1 2.0761 7.1221 0.4280 41 1 3.5146 6.1515 -0.1967 42 1 3.2669 -1.1418 0.1680 43 1 2.2612 -3.1072 1.2345 44 1 0.9221 -1.9588 1.6747 45 1 0.3869 -4.4863 -1.4524 46 1 1.7760 -4.6250 -0.3482 47 1 0.1211 -6.7179 0.0342 48 1 -0.8757 -9.7830 0.9012 49 1 1.4732 -1.6391 -2.0616 50 1 2.6576 -2.8772 -1.4534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499654584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:29 Heat of formation + Delta-G solvation = -40.834304 kcal Electronic energy + Delta-G solvation = -30009.078770 eV Core-core repulsion = 25846.231370 eV Total energy + Delta-G solvation = -4162.847399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87625 -39.86555 -38.47564 -37.61190 -35.66426 -34.78647 -33.89603 -31.95764 -31.29226 -30.02280 -28.09895 -26.97323 -26.03374 -25.37605 -24.42630 -23.25652 -22.70958 -20.67052 -19.83021 -19.29044 -18.56034 -17.94488 -17.48721 -16.92923 -16.27711 -16.18064 -15.91970 -15.68702 -15.33608 -14.81791 -14.69580 -14.58115 -14.23273 -13.76104 -13.60742 -13.36060 -13.28219 -13.22989 -12.75095 -12.60477 -12.32265 -12.26165 -12.06059 -11.98225 -11.82300 -11.56618 -11.50108 -11.44126 -11.11194 -11.08204 -10.91592 -10.84817 -10.73896 -10.51424 -10.46347 -10.23363 -10.18609 -9.57066 -9.51925 -8.70729 -8.56237 -8.25611 -7.98918 -6.43990 -3.85044 2.57934 2.86305 3.17899 3.23954 3.28028 3.35211 3.86506 3.97844 4.10099 4.19008 4.20046 4.34664 4.55073 4.59304 4.61718 4.73237 4.83786 4.91508 4.95847 5.01318 5.14264 5.20483 5.26331 5.34224 5.41411 5.44654 5.49600 5.53157 5.62320 5.63845 5.67768 5.70540 5.71926 5.77611 5.80260 5.85431 5.89777 6.11146 6.13130 6.22818 6.27025 6.54455 6.62527 7.12153 7.42054 7.52390 7.53827 8.02789 8.18292 8.58530 9.15217 9.51518 10.02910 10.73581 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031240 B = 0.001892 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.063184 B =14798.336906 C =15137.689760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.591 5.591 3 C 0.515 3.485 4 O -0.524 6.524 5 C -0.164 4.164 6 C 0.182 3.818 7 C -0.155 4.155 8 O -0.538 6.538 9 C -0.190 4.190 10 C -0.178 4.178 11 C -0.165 4.165 12 C 0.112 3.888 13 C 0.014 3.986 14 N -0.452 5.452 15 C 0.009 3.991 16 C 0.444 3.556 17 O -0.581 6.581 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.013 4.013 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.369 0.631 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.089 0.911 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 24.085 -5.998 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.324 5.324 3 C 0.303 3.697 4 O -0.400 6.400 5 C -0.204 4.204 6 C 0.140 3.860 7 C -0.211 4.211 8 O -0.342 6.342 9 C -0.209 4.209 10 C -0.215 4.215 11 C -0.202 4.202 12 C 0.007 3.993 13 C -0.115 4.115 14 N -0.175 5.175 15 C -0.123 4.123 16 C 0.229 3.771 17 O -0.465 6.465 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.143 4.143 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.215 0.785 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.107 0.893 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.516 24.489 -6.021 25.815 hybrid contribution -0.334 -1.337 0.734 1.561 sum 5.181 23.153 -5.288 24.307 Atomic orbital electron populations 1.21980 0.78479 1.04125 1.02515 1.47507 1.07384 1.04623 1.72839 1.20453 0.88073 0.84954 0.76229 1.90662 1.13635 1.86880 1.48809 1.22428 0.99712 0.93263 1.04984 1.20280 0.88890 0.88956 0.87857 1.22098 0.99918 1.05024 0.94103 1.86707 1.36338 1.96206 1.14961 1.23064 1.01999 0.93320 1.02489 1.23126 1.02539 1.03416 0.92401 1.22863 0.98882 0.96610 1.01812 1.22450 0.97245 0.83342 0.96295 1.24201 0.96213 0.95693 0.95435 1.68434 1.36157 1.09356 1.03538 1.22465 0.99293 0.90050 1.00507 1.19676 0.86604 0.83122 0.87708 1.90511 1.52723 1.58993 1.44235 1.41871 1.42640 1.05084 1.30454 1.19638 1.22770 0.90920 1.09589 0.88008 1.25263 0.98282 0.96023 0.98360 1.69607 1.43435 1.04736 1.36497 0.85918 0.80233 0.77479 0.80591 1.19898 1.20965 1.19932 1.24469 0.94759 0.97330 0.97737 0.92614 0.92055 0.87844 0.88065 0.88733 0.91754 0.92288 0.88873 0.78524 0.87715 0.87910 0.88842 0.88929 0.88337 0.87474 0.90555 0.88461 0.89178 0.92688 0.77501 0.91810 0.89267 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.23 59.84 0.55 1.33 16 2 N -0.59 -7.07 3.09 -175.27 -0.54 -7.62 16 3 C 0.51 6.18 7.23 -10.99 -0.08 6.10 16 4 O -0.52 -7.96 12.43 -12.71 -0.16 -8.12 16 5 C -0.16 -1.38 3.50 -27.88 -0.10 -1.48 16 6 C 0.18 1.62 0.80 -90.62 -0.07 1.54 16 7 C -0.15 -1.51 7.18 37.15 0.27 -1.25 16 8 O -0.54 -5.78 11.85 -53.50 -0.63 -6.42 16 9 C -0.19 -1.33 5.32 -90.62 -0.48 -1.81 16 10 C -0.18 -1.12 9.65 -26.73 -0.26 -1.38 16 11 C -0.16 -1.13 9.85 -26.73 -0.26 -1.40 16 12 C 0.11 1.45 4.51 -69.62 -0.31 1.14 16 13 C 0.01 0.21 6.02 -2.63 -0.02 0.20 16 14 N -0.45 -7.00 4.10 -239.66 -0.98 -7.98 16 15 C 0.01 0.15 5.31 -4.98 -0.03 0.12 16 16 C 0.44 10.20 7.59 -10.99 -0.08 10.12 16 17 O -0.58 -15.19 15.13 5.55 0.08 -15.10 16 18 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 19 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 23 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.01 -0.16 7.39 -2.76 -0.02 -0.18 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.49 6.44 -51.93 -0.33 0.16 16 30 H 0.10 1.33 6.07 -51.93 -0.32 1.02 16 31 H 0.10 0.71 7.40 -51.93 -0.38 0.32 16 32 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.06 0.51 6.75 -51.93 -0.35 0.16 16 34 H 0.06 0.56 6.96 -51.93 -0.36 0.20 16 35 H 0.09 1.18 5.51 -51.93 -0.29 0.89 16 36 H 0.37 2.74 9.04 45.56 0.41 3.15 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.64 5.89 -51.93 -0.31 0.34 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.76 7.29 -51.93 -0.38 0.39 16 42 H 0.11 1.44 7.22 -51.93 -0.37 1.07 16 43 H 0.08 1.16 7.79 -51.93 -0.40 0.75 16 44 H 0.10 1.65 7.84 -51.93 -0.41 1.25 16 45 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.06 0.85 7.70 -51.93 -0.40 0.45 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -33.09 394.60 -8.86 -41.96 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -7.09 Total: 14.07 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.13 Total: 5.15 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.86 Total: -53.36 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.71 Total: -29.64 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.09 -8.86 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499654584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.122 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds