Wall clock time and date at job start Tue Mar 31 2020 23:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 119.99777 * 2 1 4 4 O 1.21281 * 120.00250 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00209 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47476 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47582 * 59.99570 * 6 5 3 8 8 O 1.42904 * 109.46698 * 299.99500 * 6 5 3 9 9 C 1.53005 * 109.47338 * 180.02562 * 6 5 3 10 10 C 1.52997 * 117.49415 * 253.62005 * 9 6 5 11 11 C 1.52999 * 60.00119 * 252.50736 * 10 9 6 12 12 C 1.46499 * 120.00429 * 180.02562 * 2 1 3 13 13 C 1.53935 * 113.73257 * 321.23094 * 12 2 1 14 14 N 1.48193 * 86.10337 * 90.77914 * 13 12 2 15 15 C 1.46894 * 111.06841 * 137.52059 * 14 13 12 16 16 C 1.50700 * 109.47159 * 70.57068 * 15 14 13 17 17 O 1.21293 * 120.00121 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99788 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99947 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99748 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00139 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99879 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00004 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47154 * 60.00217 * 23 21 19 25 25 H 1.48502 * 109.47214 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47100 * 300.00320 * 23 21 19 27 27 C 1.47967 * 90.79407 * 24.60047 * 14 13 12 28 28 H 1.09005 * 109.47138 * 269.99436 * 1 2 3 29 29 H 1.08993 * 109.47587 * 29.99946 * 1 2 3 30 30 H 1.08999 * 109.47189 * 150.00247 * 1 2 3 31 31 H 1.09006 * 109.47064 * 299.99915 * 5 3 2 32 32 H 1.09001 * 109.47474 * 59.99912 * 5 3 2 33 33 H 1.09005 * 109.46977 * 59.99875 * 7 6 5 34 34 H 1.08999 * 109.47764 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.47404 * 300.00680 * 7 6 5 36 36 H 0.96695 * 114.00143 * 299.99771 * 8 6 5 37 37 H 1.08994 * 115.55227 * 39.32254 * 9 6 5 38 38 H 1.08999 * 117.50308 * 359.97438 * 10 9 6 39 39 H 1.09005 * 117.49832 * 145.01712 * 10 9 6 40 40 H 1.08999 * 117.49799 * 252.51535 * 11 10 9 41 41 H 1.08994 * 117.49779 * 107.48843 * 11 10 9 42 42 H 1.09002 * 112.93874 * 189.66421 * 12 2 1 43 43 H 1.09000 * 113.76137 * 205.06289 * 13 12 2 44 44 H 1.09002 * 113.75885 * 336.42988 * 13 12 2 45 45 H 1.08999 * 109.46814 * 190.56779 * 15 14 13 46 46 H 1.08996 * 109.47288 * 310.56415 * 15 14 13 47 47 H 0.96997 * 120.00477 * 359.97438 * 18 16 15 48 48 H 0.97005 * 119.99760 * 179.97438 * 22 21 19 49 49 H 1.09001 * 113.75575 * 221.08036 * 27 14 13 50 50 H 1.08993 * 113.75515 * 89.72269 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3794 3.6353 -0.0002 7 6 3.2582 3.5543 -1.2500 8 8 3.2018 3.5596 1.1661 9 6 1.6144 4.9603 0.0011 10 6 1.5912 5.7637 -1.3008 11 6 2.4318 6.2482 -0.1177 12 6 2.1975 -1.2687 -0.0006 13 6 1.5559 -2.3550 0.8813 14 7 0.8109 -2.7591 -0.3343 15 6 0.7705 -4.2215 -0.4671 16 6 -0.1309 -4.7976 0.5943 17 8 -0.6848 -4.0623 1.3841 18 7 -0.3215 -6.1299 0.6660 19 6 -1.1412 -6.6541 1.6320 20 1 -1.6343 -5.9994 2.3352 21 6 -1.3382 -8.0276 1.7056 22 7 -0.7385 -8.8241 0.8496 23 14 -2.4554 -8.7417 3.0213 24 1 -3.8251 -8.1910 2.8599 25 1 -2.4968 -10.2200 2.8866 26 1 -1.9322 -8.3818 4.3637 27 6 1.8625 -2.1771 -1.1973 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7583 2.5302 -0.8892 32 1 0.7589 2.5299 0.8908 33 1 2.6309 3.6120 -2.1396 34 1 3.9668 4.3826 -1.2503 35 1 3.8032 2.6104 -1.2505 36 1 2.7103 3.6050 1.9975 37 1 0.7212 4.9869 0.6252 38 1 2.1213 5.3486 -2.1580 39 1 0.6825 6.3190 -1.5334 40 1 2.0761 7.1221 0.4280 41 1 3.5146 6.1515 -0.1967 42 1 3.2669 -1.1418 0.1680 43 1 2.2612 -3.1072 1.2345 44 1 0.9221 -1.9588 1.6747 45 1 0.3869 -4.4863 -1.4524 46 1 1.7760 -4.6250 -0.3482 47 1 0.1211 -6.7179 0.0342 48 1 -0.8757 -9.7830 0.9012 49 1 1.4732 -1.6391 -2.0616 50 1 2.6576 -2.8772 -1.4534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499654584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:27 Heat of formation + Delta-G solvation = -65.173691 kcal Electronic energy + Delta-G solvation = -30010.134205 eV Core-core repulsion = 25846.231370 eV Total energy + Delta-G solvation = -4163.902834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.90411 -40.83349 -39.74182 -38.95342 -36.34001 -36.02169 -35.67983 -33.30003 -32.71802 -31.29118 -28.92321 -28.03161 -27.24565 -26.90365 -25.39844 -24.45856 -23.20905 -21.61619 -21.06330 -20.51522 -19.92042 -19.53586 -18.34414 -17.88387 -17.74054 -17.10495 -16.82898 -16.75486 -16.54685 -16.29943 -16.10298 -15.61907 -15.45091 -15.04383 -14.84046 -14.74262 -14.22921 -13.97174 -13.89252 -13.68556 -13.47214 -13.30790 -13.20658 -13.09154 -12.99992 -12.75798 -12.67634 -12.60846 -12.44019 -12.15516 -12.12718 -12.02820 -11.88522 -11.76136 -11.48827 -11.38722 -11.06059 -10.89721 -10.47928 -10.30684 -10.01212 -9.71628 -9.55457 -8.46549 -5.95127 1.39188 1.41142 1.51847 1.66909 1.95847 2.05848 2.28327 2.78857 2.82250 3.20093 3.26672 3.42382 3.54785 3.61023 3.66562 3.79344 3.99653 4.02066 4.17702 4.20587 4.25126 4.28160 4.35991 4.42575 4.45698 4.48302 4.54967 4.61333 4.64290 4.73659 4.79269 4.81558 4.87183 4.91625 4.97167 5.03449 5.06468 5.19555 5.29038 5.31100 5.31195 5.40696 5.47389 5.63481 5.84414 6.04805 6.49930 6.60101 6.95126 7.12729 7.26317 7.56568 8.11907 8.70543 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031240 B = 0.001892 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.063184 B =14798.336906 C =15137.689760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.593 5.593 3 C 0.511 3.489 4 O -0.559 6.559 5 C -0.157 4.157 6 C 0.180 3.820 7 C -0.153 4.153 8 O -0.564 6.564 9 C -0.188 4.188 10 C -0.171 4.171 11 C -0.173 4.173 12 C 0.120 3.880 13 C 0.011 3.989 14 N -0.464 5.464 15 C 0.020 3.980 16 C 0.442 3.558 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.001 3.999 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.380 0.620 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.077 0.923 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.102 0.898 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 25.096 -6.941 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.325 5.325 3 C 0.301 3.699 4 O -0.438 6.438 5 C -0.196 4.196 6 C 0.139 3.861 7 C -0.210 4.210 8 O -0.370 6.370 9 C -0.206 4.206 10 C -0.208 4.208 11 C -0.210 4.210 12 C 0.014 3.986 13 C -0.119 4.119 14 N -0.187 5.187 15 C -0.111 4.111 16 C 0.230 3.770 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.128 4.128 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.228 0.772 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.128 0.872 46 H 0.094 0.906 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.121 0.879 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.685 25.506 -6.983 26.856 hybrid contribution -0.026 -1.586 1.024 1.888 sum 4.658 23.919 -5.959 25.087 Atomic orbital electron populations 1.21984 0.77611 1.04846 1.02235 1.47612 1.07855 1.04352 1.72635 1.21094 0.87838 0.85840 0.75108 1.90662 1.15369 1.87396 1.50363 1.22463 0.99531 0.90694 1.06956 1.20334 0.88763 0.90233 0.86804 1.22071 1.00185 1.03060 0.95675 1.86675 1.37843 1.96385 1.16145 1.22993 1.02166 0.92037 1.03411 1.23199 1.02800 1.02851 0.91945 1.22880 0.98222 0.97105 1.02748 1.22295 0.96858 0.83603 0.95875 1.24127 0.95884 0.96688 0.95160 1.68463 1.37823 1.08097 1.04355 1.22375 0.98821 0.91013 0.98897 1.20708 0.86070 0.82267 0.88001 1.90485 1.54099 1.59675 1.45908 1.41949 1.42924 1.05994 1.30409 1.19605 1.24405 0.91453 1.10686 0.90315 1.26029 0.99290 0.95828 1.00202 1.69669 1.43996 1.05092 1.37395 0.85003 0.78287 0.77211 0.77926 1.19672 1.19578 1.19798 1.24500 0.94104 0.96904 0.97340 0.93416 0.88620 0.89756 0.85790 0.86734 0.89919 0.92776 0.91891 0.77195 0.86120 0.88038 0.87374 0.87892 0.89811 0.88023 0.90897 0.90949 0.87184 0.90555 0.77087 0.91357 0.87937 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 9.23 127.77 1.18 2.69 16 2 N -0.59 -13.51 3.09 -826.84 -2.56 -16.06 16 3 C 0.51 11.70 7.23 87.66 0.63 12.33 16 4 O -0.56 -16.99 12.43 14.43 0.18 -16.81 16 5 C -0.16 -2.27 3.50 29.85 0.10 -2.17 16 6 C 0.18 2.93 0.80 -10.79 -0.01 2.92 16 7 C -0.15 -2.88 7.18 71.98 0.52 -2.37 16 8 O -0.56 -11.86 11.85 -131.52 -1.56 -13.42 16 9 C -0.19 -2.17 5.32 -10.79 -0.06 -2.23 16 10 C -0.17 -1.73 9.65 30.59 0.30 -1.43 16 11 C -0.17 -2.10 9.85 30.59 0.30 -1.80 16 12 C 0.12 3.01 4.51 46.55 0.21 3.22 16 13 C 0.01 0.34 6.02 86.36 0.52 0.86 16 14 N -0.46 -13.91 4.10 -912.14 -3.74 -17.65 16 15 C 0.02 0.67 5.31 85.56 0.45 1.13 16 16 C 0.44 20.51 7.59 87.66 0.67 21.18 16 17 O -0.62 -33.00 15.13 -3.07 -0.05 -33.05 16 18 N -0.58 -29.15 5.29 -306.98 -1.62 -30.77 16 19 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 22 N -0.92 -49.46 13.05 21.66 0.28 -49.17 16 23 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.00 0.02 7.39 86.41 0.64 0.66 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.10 1.23 6.44 -2.39 -0.02 1.21 16 30 H 0.08 2.07 6.07 -2.39 -0.01 2.06 16 31 H 0.12 1.26 7.40 -2.38 -0.02 1.24 16 32 H 0.11 1.24 8.11 -2.39 -0.02 1.22 16 33 H 0.08 1.18 6.75 -2.38 -0.02 1.17 16 34 H 0.05 1.03 6.96 -2.39 -0.02 1.01 16 35 H 0.06 1.61 5.51 -2.39 -0.01 1.59 16 36 H 0.38 5.38 9.04 -74.06 -0.67 4.71 16 37 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.05 5.89 -2.39 -0.01 1.03 16 39 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 1.27 7.29 -2.39 -0.02 1.25 16 42 H 0.10 2.72 7.22 -2.39 -0.02 2.70 16 43 H 0.07 2.24 7.79 -2.39 -0.02 2.22 16 44 H 0.07 2.56 7.84 -2.39 -0.02 2.54 16 45 H 0.11 3.23 8.14 -2.39 -0.02 3.22 16 46 H 0.08 2.22 7.70 -2.39 -0.02 2.20 16 47 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 48 H 0.28 14.00 8.31 -92.70 -0.77 13.22 16 49 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.10 1.85 7.79 -2.39 -0.02 1.83 16 Total: -1.00 -73.30 394.60 -0.72 -74.03 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.42 Total: 41.29 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 6.73 Total: 16.87 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -7.63 Total: -113.65 kcal Atomic # 8 Polarization: -61.85 SS G_CDS: -1.43 Total: -63.28 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -73.30 -0.72 -74.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499654584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.852 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds