Wall clock time and date at job start Wed Apr 1 2020 00:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47276 * 2 1 4 4 H 1.09005 * 109.46925 * 305.48398 * 3 2 1 5 5 O 1.42897 * 109.47585 * 65.48223 * 3 2 1 6 6 C 1.42901 * 114.00492 * 252.76265 * 5 3 2 7 7 C 1.50702 * 109.47173 * 185.48673 * 3 2 1 8 8 O 1.21277 * 119.99735 * 253.94951 * 7 3 2 9 9 N 1.34779 * 120.00026 * 73.67786 * 7 3 2 10 10 C 1.48316 * 128.20287 * 354.98531 * 9 7 3 11 11 C 1.53993 * 104.57674 * 221.86889 * 10 9 7 12 12 H 1.08997 * 112.89516 * 97.91033 * 11 10 9 13 13 C 1.55909 * 108.94809 * 224.42837 * 11 10 9 14 14 N 1.48727 * 104.36906 * 136.69516 * 13 11 10 15 15 C 1.46895 * 111.00291 * 198.75895 * 14 13 11 16 16 C 1.50699 * 109.47329 * 284.52637 * 15 14 13 17 17 O 1.21300 * 119.99423 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00605 * 179.97438 * 16 15 14 19 19 C 1.37090 * 120.00184 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00447 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99815 * 179.97438 * 19 18 16 22 22 N 1.31407 * 119.99802 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99922 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46710 * 90.00417 * 23 21 19 25 25 H 1.48498 * 109.46972 * 210.00575 * 23 21 19 26 26 H 1.48497 * 109.46888 * 330.00278 * 23 21 19 27 27 C 1.48734 * 103.49481 * 317.89539 * 14 13 11 28 28 C 1.54410 * 104.35011 * 41.79943 * 27 14 13 29 29 H 1.08998 * 112.56581 * 98.12560 * 28 27 14 30 30 C 1.48310 * 128.20098 * 175.30961 * 9 7 3 31 31 H 1.08996 * 109.47061 * 174.86411 * 1 2 3 32 32 H 1.09001 * 109.46767 * 294.85983 * 1 2 3 33 33 H 1.08996 * 109.46909 * 54.85761 * 1 2 3 34 34 H 1.08995 * 109.46946 * 239.99910 * 2 1 3 35 35 H 1.08998 * 109.47460 * 119.99733 * 2 1 3 36 36 H 1.09005 * 109.46853 * 305.08937 * 6 5 3 37 37 H 1.09003 * 109.46988 * 65.08457 * 6 5 3 38 38 H 1.08998 * 109.47088 * 185.08892 * 6 5 3 39 39 H 1.08992 * 110.45478 * 340.62844 * 10 9 7 40 40 H 1.09008 * 110.45104 * 103.18290 * 10 9 7 41 41 H 1.09001 * 110.70647 * 17.83975 * 13 11 10 42 42 H 1.09009 * 110.29594 * 255.34357 * 13 11 10 43 43 H 1.09008 * 109.47026 * 44.52370 * 15 14 13 44 44 H 1.08998 * 109.47185 * 164.52271 * 15 14 13 45 45 H 0.97000 * 119.99463 * 0.02562 * 18 16 15 46 46 H 0.97000 * 119.99669 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.45837 * 283.08539 * 27 14 13 48 48 H 1.09000 * 110.56693 * 160.57351 * 27 14 13 49 49 H 1.09004 * 110.45412 * 256.81412 * 30 9 7 50 50 H 1.09002 * 110.45896 * 19.24514 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5987 1.9839 -0.8369 5 8 1.6718 2.0780 1.2257 6 6 0.6245 3.0407 1.0897 7 6 3.5409 1.4446 -0.1359 8 8 4.2362 1.7035 0.8235 9 7 4.1106 1.1534 -1.3221 10 6 3.4489 0.7098 -2.5732 11 6 4.3651 -0.3984 -3.1243 12 1 4.0186 -1.4002 -2.8709 13 6 4.5513 -0.1854 -4.6576 14 7 6.0024 -0.4152 -4.8886 15 6 6.4304 0.1663 -6.1679 16 6 5.9553 -0.7068 -7.3006 17 8 5.3228 -1.7147 -7.0652 18 7 6.2332 -0.3679 -8.5751 19 6 5.8014 -1.1625 -9.6054 20 1 5.2382 -2.0599 -9.3959 21 6 6.0875 -0.8127 -10.9194 22 7 6.7723 0.2795 -11.1744 23 14 5.4997 -1.8958 -12.3234 24 1 4.1518 -1.4515 -12.7604 25 1 6.4487 -1.7901 -13.4607 26 1 5.4316 -3.3066 -11.8651 27 6 6.6504 0.2793 -3.7441 28 6 5.7672 -0.0791 -2.5293 29 1 6.1743 -0.9044 -1.9451 30 6 5.5484 1.1943 -1.6837 31 1 -0.3633 -1.0235 -0.0920 32 1 -0.3633 0.4320 0.9325 33 1 -0.3633 0.5915 -0.8403 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 0.9031 3.7763 0.3350 37 1 -0.2937 2.5381 0.7856 38 1 0.4654 3.5419 2.0444 39 1 2.4574 0.3111 -2.3590 40 1 3.3836 1.5348 -3.2827 41 1 4.2764 0.8304 -4.9418 42 1 3.9573 -0.9100 -5.2148 43 1 6.0038 1.1637 -6.2744 44 1 7.5181 0.2320 -6.1913 45 1 6.7393 0.4379 -8.7633 46 1 6.9723 0.5235 -12.0916 47 1 6.6559 1.3572 -3.9062 48 1 7.6661 -0.0884 -3.5984 49 1 5.7678 2.0849 -2.2726 50 1 6.1676 1.1695 -0.7871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501208655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:46 Heat of formation + Delta-G solvation = -94.002124 kcal Electronic energy + Delta-G solvation = -30098.317315 eV Core-core repulsion = 25933.164386 eV Total energy + Delta-G solvation = -4165.152929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.87018 -39.52188 -38.19315 -37.60967 -35.75671 -33.95370 -33.76943 -31.70862 -31.15911 -30.70646 -28.81928 -27.37548 -26.33160 -25.77883 -24.71976 -23.53321 -22.25023 -21.44267 -19.84658 -19.69745 -19.05600 -17.86364 -17.83129 -17.02422 -16.41959 -16.12249 -15.86911 -15.72859 -15.37610 -14.85651 -14.82336 -14.55309 -14.45314 -14.20691 -13.78557 -13.72890 -13.35675 -13.14338 -12.95646 -12.78252 -12.54620 -12.34978 -12.22041 -12.00230 -11.94772 -11.80738 -11.63557 -11.46256 -11.31865 -11.21572 -11.07886 -10.97907 -10.89020 -10.71683 -10.43836 -10.40784 -10.23229 -9.63886 -9.50886 -9.03194 -8.56841 -8.07004 -7.96897 -6.43165 -3.83889 2.31331 2.39971 3.16187 3.25054 3.30887 3.46564 3.88232 3.93509 4.03191 4.17583 4.27542 4.40039 4.44636 4.49005 4.68697 4.77503 4.84329 4.88947 4.94358 4.99627 5.04457 5.06507 5.10953 5.21409 5.23032 5.25159 5.28575 5.33260 5.50353 5.53447 5.55773 5.57190 5.65230 5.69368 5.75163 5.79773 5.82629 5.85944 6.01943 6.13525 6.24712 6.27923 6.63650 6.98997 7.13804 7.25008 7.53702 7.89499 8.04724 8.60524 9.16961 9.53239 10.05189 10.74646 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.002068 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.367236 B =13536.511233 C =14212.692382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C 0.078 3.922 4 H 0.086 0.914 5 O -0.357 6.357 6 C 0.026 3.974 7 C 0.530 3.470 8 O -0.522 6.522 9 N -0.624 5.624 10 C 0.097 3.903 11 C -0.100 4.100 12 H 0.101 0.899 13 C 0.043 3.957 14 N -0.479 5.479 15 C 0.033 3.967 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.034 3.966 28 C -0.100 4.100 29 H 0.098 0.902 30 C 0.109 3.891 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.391 0.609 46 H 0.271 0.729 47 H 0.046 0.954 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 6.056 19.871 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.176 4.176 3 C 0.017 3.983 4 H 0.104 0.896 5 O -0.275 6.275 6 C -0.071 4.071 7 C 0.318 3.682 8 O -0.397 6.397 9 N -0.361 5.361 10 C -0.026 4.026 11 C -0.120 4.120 12 H 0.119 0.881 13 C -0.085 4.085 14 N -0.203 5.203 15 C -0.099 4.099 16 C 0.230 3.770 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.095 4.095 28 C -0.120 4.120 29 H 0.116 0.884 30 C -0.014 4.014 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.116 0.884 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.184 5.030 20.634 23.139 hybrid contribution -0.188 1.098 -1.342 1.744 sum -9.373 6.128 19.292 22.306 Atomic orbital electron populations 1.21794 0.94492 1.02534 1.02092 1.21968 0.97278 0.94330 1.03981 1.22009 0.91472 0.95843 0.88986 0.89583 1.88030 1.54945 1.56005 1.28490 1.22995 0.89866 0.91315 1.02923 1.20326 0.90114 0.76707 0.81079 1.90719 1.64255 1.47915 1.36824 1.49147 1.09005 1.67522 1.10378 1.22753 0.97200 0.97200 0.85439 1.23162 0.94383 0.98980 0.95452 0.88110 1.23581 0.90871 1.00403 0.93670 1.65433 1.04087 1.50659 1.00089 1.22062 1.01386 0.96163 0.90249 1.19692 0.85745 0.88097 0.83444 1.90513 1.43979 1.27754 1.83791 1.41865 1.49463 1.24703 1.04263 1.19684 1.32243 1.06375 0.84422 0.87936 1.25260 0.97075 0.96985 0.98696 1.69609 1.39492 1.24078 1.21215 0.85865 0.78263 0.80174 0.80034 1.20453 1.20945 1.19407 1.23331 0.98938 0.96849 0.90343 1.22939 0.95624 0.97414 0.96001 0.88383 1.22622 0.81729 0.97496 0.99509 0.91796 0.92062 0.92603 0.89962 0.90196 0.93844 0.93479 0.89155 0.89804 0.90346 0.93887 0.88363 0.93133 0.89245 0.77543 0.91898 0.93565 0.89766 0.90694 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.07 37.16 0.34 -0.58 16 2 C -0.14 -1.07 5.41 -26.73 -0.14 -1.21 16 3 C 0.08 0.73 1.96 -27.88 -0.05 0.68 16 4 H 0.09 0.62 7.53 -51.93 -0.39 0.23 16 5 O -0.36 -3.84 9.61 -54.74 -0.53 -4.37 16 6 C 0.03 0.17 10.50 101.05 1.06 1.23 16 7 C 0.53 6.47 7.22 -10.98 -0.08 6.40 16 8 O -0.52 -8.58 16.83 -13.95 -0.23 -8.82 16 9 N -0.62 -6.46 3.31 -169.26 -0.56 -7.02 16 10 C 0.10 0.83 6.16 -2.52 -0.02 0.81 16 11 C -0.10 -1.04 4.23 -87.15 -0.37 -1.41 16 12 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 13 C 0.04 0.58 5.50 -1.26 -0.01 0.58 16 14 N -0.48 -7.34 4.99 -230.07 -1.15 -8.49 16 15 C 0.03 0.56 5.34 -4.98 -0.03 0.53 16 16 C 0.45 10.15 7.64 -10.99 -0.08 10.07 16 17 O -0.58 -15.12 14.85 5.54 0.08 -15.03 16 18 N -0.57 -13.99 5.29 -10.96 -0.06 -14.05 16 19 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 23 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 C 0.03 0.39 5.95 -2.07 -0.01 0.37 16 28 C -0.10 -1.02 4.13 -87.75 -0.36 -1.38 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 C 0.11 1.09 6.60 -2.30 -0.02 1.07 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 7.04 -51.93 -0.37 0.02 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.57 5.92 -51.93 -0.31 0.27 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.26 8.05 -51.93 -0.42 -0.15 16 37 H 0.05 0.24 6.72 -51.93 -0.35 -0.11 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.57 5.49 -51.93 -0.29 0.28 16 40 H 0.08 0.63 7.19 -51.92 -0.37 0.26 16 41 H 0.04 0.54 6.86 -51.93 -0.36 0.18 16 42 H 0.10 1.61 7.25 -51.92 -0.38 1.24 16 43 H 0.05 0.76 7.77 -51.92 -0.40 0.36 16 44 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 45 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.05 0.47 7.06 -51.93 -0.37 0.11 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.07 0.69 7.18 -51.93 -0.37 0.32 16 50 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -34.23 394.02 -8.80 -43.04 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.98 Total: 7.23 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.01 Total: 9.34 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -1.04 Total: -53.04 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.68 Total: -28.22 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.23 -8.80 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501208655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.964 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds