Wall clock time and date at job start Wed Apr 1 2020 00:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47276 * 2 1 4 4 H 1.09005 * 109.46925 * 305.48398 * 3 2 1 5 5 O 1.42897 * 109.47585 * 65.48223 * 3 2 1 6 6 C 1.42901 * 114.00492 * 252.76265 * 5 3 2 7 7 C 1.50702 * 109.47173 * 185.48673 * 3 2 1 8 8 O 1.21277 * 119.99735 * 253.94951 * 7 3 2 9 9 N 1.34779 * 120.00026 * 73.67786 * 7 3 2 10 10 C 1.48316 * 128.20287 * 354.98531 * 9 7 3 11 11 C 1.53993 * 104.57674 * 221.86889 * 10 9 7 12 12 H 1.08997 * 112.89516 * 97.91033 * 11 10 9 13 13 C 1.55909 * 108.94809 * 224.42837 * 11 10 9 14 14 N 1.48727 * 104.36906 * 136.69516 * 13 11 10 15 15 C 1.46895 * 111.00291 * 198.75895 * 14 13 11 16 16 C 1.50699 * 109.47329 * 284.52637 * 15 14 13 17 17 O 1.21300 * 119.99423 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00605 * 179.97438 * 16 15 14 19 19 C 1.37090 * 120.00184 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00447 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99815 * 179.97438 * 19 18 16 22 22 N 1.31407 * 119.99802 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99922 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46710 * 90.00417 * 23 21 19 25 25 H 1.48498 * 109.46972 * 210.00575 * 23 21 19 26 26 H 1.48497 * 109.46888 * 330.00278 * 23 21 19 27 27 C 1.48734 * 103.49481 * 317.89539 * 14 13 11 28 28 C 1.54410 * 104.35011 * 41.79943 * 27 14 13 29 29 H 1.08998 * 112.56581 * 98.12560 * 28 27 14 30 30 C 1.48310 * 128.20098 * 175.30961 * 9 7 3 31 31 H 1.08996 * 109.47061 * 174.86411 * 1 2 3 32 32 H 1.09001 * 109.46767 * 294.85983 * 1 2 3 33 33 H 1.08996 * 109.46909 * 54.85761 * 1 2 3 34 34 H 1.08995 * 109.46946 * 239.99910 * 2 1 3 35 35 H 1.08998 * 109.47460 * 119.99733 * 2 1 3 36 36 H 1.09005 * 109.46853 * 305.08937 * 6 5 3 37 37 H 1.09003 * 109.46988 * 65.08457 * 6 5 3 38 38 H 1.08998 * 109.47088 * 185.08892 * 6 5 3 39 39 H 1.08992 * 110.45478 * 340.62844 * 10 9 7 40 40 H 1.09008 * 110.45104 * 103.18290 * 10 9 7 41 41 H 1.09001 * 110.70647 * 17.83975 * 13 11 10 42 42 H 1.09009 * 110.29594 * 255.34357 * 13 11 10 43 43 H 1.09008 * 109.47026 * 44.52370 * 15 14 13 44 44 H 1.08998 * 109.47185 * 164.52271 * 15 14 13 45 45 H 0.97000 * 119.99463 * 0.02562 * 18 16 15 46 46 H 0.97000 * 119.99669 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.45837 * 283.08539 * 27 14 13 48 48 H 1.09000 * 110.56693 * 160.57351 * 27 14 13 49 49 H 1.09004 * 110.45412 * 256.81412 * 30 9 7 50 50 H 1.09002 * 110.45896 * 19.24514 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5987 1.9839 -0.8369 5 8 1.6718 2.0780 1.2257 6 6 0.6245 3.0407 1.0897 7 6 3.5409 1.4446 -0.1359 8 8 4.2362 1.7035 0.8235 9 7 4.1106 1.1534 -1.3221 10 6 3.4489 0.7098 -2.5732 11 6 4.3651 -0.3984 -3.1243 12 1 4.0186 -1.4002 -2.8709 13 6 4.5513 -0.1854 -4.6576 14 7 6.0024 -0.4152 -4.8886 15 6 6.4304 0.1663 -6.1679 16 6 5.9553 -0.7068 -7.3006 17 8 5.3228 -1.7147 -7.0652 18 7 6.2332 -0.3679 -8.5751 19 6 5.8014 -1.1625 -9.6054 20 1 5.2382 -2.0599 -9.3959 21 6 6.0875 -0.8127 -10.9194 22 7 6.7723 0.2795 -11.1744 23 14 5.4997 -1.8958 -12.3234 24 1 4.1518 -1.4515 -12.7604 25 1 6.4487 -1.7901 -13.4607 26 1 5.4316 -3.3066 -11.8651 27 6 6.6504 0.2793 -3.7441 28 6 5.7672 -0.0791 -2.5293 29 1 6.1743 -0.9044 -1.9451 30 6 5.5484 1.1943 -1.6837 31 1 -0.3633 -1.0235 -0.0920 32 1 -0.3633 0.4320 0.9325 33 1 -0.3633 0.5915 -0.8403 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 0.9031 3.7763 0.3350 37 1 -0.2937 2.5381 0.7856 38 1 0.4654 3.5419 2.0444 39 1 2.4574 0.3111 -2.3590 40 1 3.3836 1.5348 -3.2827 41 1 4.2764 0.8304 -4.9418 42 1 3.9573 -0.9100 -5.2148 43 1 6.0038 1.1637 -6.2744 44 1 7.5181 0.2320 -6.1913 45 1 6.7393 0.4379 -8.7633 46 1 6.9723 0.5235 -12.0916 47 1 6.6559 1.3572 -3.9062 48 1 7.6661 -0.0884 -3.5984 49 1 5.7678 2.0849 -2.2726 50 1 6.1676 1.1695 -0.7871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501208655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:45 Heat of formation + Delta-G solvation = -118.996136 kcal Electronic energy + Delta-G solvation = -30099.401137 eV Core-core repulsion = 25933.164386 eV Total energy + Delta-G solvation = -4166.236751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75674 -40.55289 -39.70828 -38.55034 -36.87538 -35.83304 -34.47238 -33.28110 -32.59702 -31.57162 -29.58537 -28.53749 -27.15662 -26.77124 -26.14004 -24.57802 -22.87172 -22.50589 -21.09595 -20.54991 -20.45542 -19.79388 -18.61856 -17.80604 -17.66497 -17.20462 -16.81847 -16.65845 -16.48641 -16.31217 -16.01137 -15.79453 -15.48478 -15.30994 -15.09889 -14.64496 -14.38637 -14.24121 -14.00179 -13.66069 -13.48324 -13.36223 -13.24403 -13.16269 -12.94151 -12.93979 -12.60726 -12.55000 -12.38485 -12.35573 -12.33755 -12.11954 -11.92850 -11.86668 -11.72887 -11.60567 -11.45252 -11.18745 -10.43214 -10.29642 -9.97531 -9.89126 -9.32759 -8.44050 -5.92103 1.39324 1.42096 1.43142 1.55517 1.62243 2.09953 2.30357 2.81570 2.85065 3.20738 3.24778 3.32945 3.55693 3.62087 3.79645 3.81197 3.90392 4.03806 4.18488 4.23194 4.24534 4.30722 4.35182 4.39367 4.43648 4.47701 4.53893 4.55194 4.58603 4.69363 4.70786 4.76058 4.80667 4.83326 4.84775 4.98201 5.07063 5.12424 5.13839 5.18147 5.29941 5.35729 5.43568 5.88550 5.92865 6.03412 6.11421 6.41881 6.64245 7.01175 7.16570 7.60829 8.16943 8.73371 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.002068 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.367236 B =13536.511233 C =14212.692382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.081 3.919 4 H 0.112 0.888 5 O -0.389 6.389 6 C 0.019 3.981 7 C 0.524 3.476 8 O -0.575 6.575 9 N -0.621 5.621 10 C 0.102 3.898 11 C -0.092 4.092 12 H 0.100 0.900 13 C 0.045 3.955 14 N -0.508 5.508 15 C 0.047 3.953 16 C 0.443 3.557 17 O -0.615 6.615 18 N -0.577 5.577 19 C -0.329 4.329 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.274 1.274 27 C 0.039 3.961 28 C -0.093 4.093 29 H 0.096 0.904 30 C 0.110 3.890 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.395 0.605 46 H 0.276 0.724 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 7.016 19.653 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.020 3.980 4 H 0.130 0.870 5 O -0.307 6.307 6 C -0.077 4.077 7 C 0.314 3.686 8 O -0.453 6.453 9 N -0.355 5.355 10 C -0.020 4.020 11 C -0.112 4.112 12 H 0.118 0.882 13 C -0.083 4.083 14 N -0.232 5.232 15 C -0.085 4.085 16 C 0.230 3.770 17 O -0.501 6.501 18 N -0.215 5.215 19 C -0.459 4.459 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.089 4.089 28 C -0.113 4.113 29 H 0.115 0.885 30 C -0.013 4.013 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.126 0.874 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.099 6.007 20.402 23.544 hybrid contribution 0.110 0.782 -1.232 1.463 sum -9.989 6.788 19.170 22.657 Atomic orbital electron populations 1.21778 0.92940 1.03238 1.02588 1.21954 0.98546 0.93230 1.03474 1.22117 0.89425 0.96961 0.89533 0.87004 1.87995 1.56198 1.56938 1.29549 1.23196 0.89676 0.91084 1.03724 1.20960 0.91304 0.75701 0.80656 1.90688 1.65586 1.50502 1.38552 1.49189 1.09350 1.66529 1.10469 1.22824 0.97537 0.96993 0.84656 1.23069 0.95059 0.99778 0.93318 0.88204 1.23505 0.89607 1.00006 0.95228 1.65352 1.05389 1.52097 1.00383 1.21900 1.02342 0.95543 0.88708 1.20787 0.84049 0.87997 0.84127 1.90487 1.45349 1.29721 1.84505 1.41943 1.50066 1.24765 1.04709 1.19628 1.33600 1.06647 0.85979 0.90358 1.26011 0.96844 0.98163 1.00400 1.69669 1.39724 1.24877 1.22008 0.84955 0.78243 0.78133 0.77186 1.19575 1.19764 1.19866 1.23368 0.99004 0.97654 0.88871 1.22860 0.95307 0.97553 0.95582 0.88523 1.22639 0.81661 0.97804 0.99153 0.91210 0.92398 0.91063 0.89087 0.92106 0.93090 0.91617 0.88568 0.87647 0.88936 0.92507 0.91939 0.90772 0.87447 0.77081 0.91414 0.91658 0.89194 0.89268 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.07 71.98 0.65 -0.80 16 2 C -0.13 -1.87 5.41 30.59 0.17 -1.70 16 3 C 0.08 1.37 1.96 29.85 0.06 1.43 16 4 H 0.11 1.26 7.53 -2.38 -0.02 1.25 16 5 O -0.39 -8.00 9.61 -130.32 -1.25 -9.25 16 6 C 0.02 0.22 10.50 113.37 1.19 1.41 16 7 C 0.52 12.32 7.22 87.66 0.63 12.95 16 8 O -0.57 -19.07 16.83 15.64 0.26 -18.81 16 9 N -0.62 -11.68 3.31 -807.79 -2.68 -14.36 16 10 C 0.10 1.46 6.16 86.37 0.53 1.99 16 11 C -0.09 -1.75 4.23 -8.55 -0.04 -1.79 16 12 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 13 C 0.04 1.15 5.50 86.96 0.48 1.63 16 14 N -0.51 -14.85 4.99 -881.81 -4.40 -19.25 16 15 C 0.05 1.50 5.34 85.56 0.46 1.96 16 16 C 0.44 20.32 7.64 87.66 0.67 20.99 16 17 O -0.62 -32.99 14.85 -3.09 -0.05 -33.04 16 18 N -0.58 -28.85 5.29 -306.98 -1.62 -30.47 16 19 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 22 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 23 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 C 0.04 0.79 5.95 86.43 0.51 1.30 16 28 C -0.09 -1.74 4.13 -8.93 -0.04 -1.77 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 C 0.11 1.99 6.60 86.51 0.57 2.56 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.61 7.04 -2.39 -0.02 0.60 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 1.07 5.92 -2.39 -0.01 1.05 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 0.51 8.05 -2.38 -0.02 0.49 16 37 H 0.07 0.51 6.72 -2.39 -0.02 0.50 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 1.08 5.49 -2.39 -0.01 1.07 16 40 H 0.09 1.15 7.19 -2.38 -0.02 1.13 16 41 H 0.06 1.29 6.86 -2.39 -0.02 1.27 16 42 H 0.06 2.07 7.25 -2.38 -0.02 2.05 16 43 H 0.07 2.05 7.77 -2.38 -0.02 2.03 16 44 H 0.11 3.07 8.08 -2.39 -0.02 3.05 16 45 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 46 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 47 H 0.07 1.11 7.06 -2.38 -0.02 1.09 16 48 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.09 1.39 7.18 -2.38 -0.02 1.38 16 50 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 Total: -1.00 -76.31 394.02 -0.07 -76.38 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.22 Total: 30.84 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 7.13 Total: 22.34 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -8.42 Total: -112.83 kcal Atomic # 8 Polarization: -60.06 SS G_CDS: -1.04 Total: -61.10 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -76.31 -0.07 -76.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501208655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.617 kcal (2) G-P(sol) polarization free energy of solvation -76.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds