Wall clock time and date at job start Tue Mar 31 2020 23:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 H 1.08999 * 115.55507 * 29.32505 * 3 2 1 5 5 C 1.53010 * 117.49579 * 243.62119 * 3 2 1 6 6 C 1.53003 * 59.99979 * 252.50806 * 5 3 2 7 7 H 1.09000 * 117.51443 * 107.47675 * 6 5 3 8 8 C 1.50690 * 117.50022 * 252.51093 * 6 5 3 9 9 O 1.21283 * 120.00310 * 68.62358 * 8 6 5 10 10 N 1.34784 * 120.00133 * 248.62109 * 8 6 5 11 11 C 1.47148 * 120.97744 * 359.97438 * 10 8 6 12 12 C 1.53300 * 108.38206 * 129.48767 * 11 10 8 13 13 O 1.42955 * 109.22459 * 52.30018 * 12 11 10 14 14 C 1.42973 * 114.20296 * 297.43733 * 13 12 11 15 15 H 1.09005 * 109.48325 * 302.62216 * 14 13 12 16 16 C 1.52997 * 109.54978 * 182.46460 * 14 13 12 17 17 N 1.46894 * 109.47202 * 65.24022 * 16 14 13 18 18 C 1.46905 * 111.00083 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46985 * 179.97438 * 18 17 16 20 20 O 1.21290 * 120.00043 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99829 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00295 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99609 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00168 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00114 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99925 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47215 * 89.99618 * 26 24 22 28 28 H 1.48499 * 109.47095 * 210.00122 * 26 24 22 29 29 H 1.48504 * 109.46965 * 329.99781 * 26 24 22 30 30 C 1.47148 * 120.98330 * 180.02562 * 10 8 6 31 31 H 1.09001 * 109.46952 * 59.99564 * 1 2 3 32 32 H 1.08995 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47112 * 300.00751 * 1 2 3 34 34 H 1.08997 * 109.46816 * 239.99489 * 2 1 3 35 35 H 1.08995 * 109.46977 * 119.99718 * 2 1 3 36 36 H 1.08999 * 117.49848 * 145.01968 * 5 3 2 37 37 H 1.09000 * 117.49660 * 359.97438 * 5 3 2 38 38 H 1.09002 * 109.68553 * 249.20548 * 11 10 8 39 39 H 1.09004 * 109.68438 * 9.76490 * 11 10 8 40 40 H 1.09005 * 109.51071 * 172.22485 * 12 11 10 41 41 H 1.08999 * 109.50922 * 292.37543 * 12 11 10 42 42 H 1.09005 * 109.47326 * 185.24102 * 16 14 13 43 43 H 1.08999 * 109.47242 * 305.23816 * 16 14 13 44 44 H 1.00900 * 111.00102 * 303.95175 * 17 16 14 45 45 H 1.09000 * 109.46807 * 300.00166 * 18 17 16 46 46 H 1.08999 * 109.46808 * 59.99755 * 18 17 16 47 47 H 0.97006 * 119.99477 * 0.02562 * 21 19 18 48 48 H 0.97004 * 120.00444 * 180.02562 * 25 24 22 49 49 H 1.09002 * 109.68336 * 350.23812 * 30 10 8 50 50 H 1.08999 * 109.68144 * 110.75482 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3885 2.1715 0.4816 5 6 2.8441 1.9074 -1.2159 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7718 0.1965 8 6 4.0229 2.8619 0.8913 9 8 3.2159 3.6166 1.3913 10 7 5.3425 3.1001 1.0271 11 6 6.3403 2.1984 0.4299 12 6 7.3349 3.0430 -0.3748 13 8 7.8421 4.0908 0.4550 14 6 6.8480 5.0132 0.9076 15 1 6.3417 5.4529 0.0482 16 6 7.5122 6.1184 1.7312 17 7 8.4004 6.9067 0.8668 18 6 9.0575 7.9793 1.6255 19 6 9.9591 8.7642 0.7077 20 8 10.0460 8.4596 -0.4631 21 7 10.6687 9.8045 1.1879 22 6 11.4892 10.5183 0.3532 23 1 11.5673 10.2466 -0.6892 24 6 12.2212 11.5905 0.8484 25 7 12.1274 11.9201 2.1170 26 14 13.3387 12.5633 -0.2892 27 1 12.5750 13.6844 -0.8935 28 1 14.4835 13.1052 0.4860 29 1 13.8460 11.6736 -1.3646 30 6 5.8280 4.2689 1.7778 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.7214 2.9426 -1.5345 37 1 3.0099 1.1855 -2.0156 38 1 6.8682 1.6615 1.2180 39 1 5.8439 1.4873 -0.2305 40 1 8.1589 2.4134 -0.7107 41 1 6.8301 3.4749 -1.2389 42 1 6.7452 6.7681 2.1530 43 1 8.0931 5.6711 2.5378 44 1 9.0811 6.3159 0.4130 45 1 8.3015 8.6419 2.0468 46 1 9.6493 7.5446 2.4310 47 1 10.5994 10.0478 2.1244 48 1 12.6381 12.6688 2.4627 49 1 4.9923 4.9291 2.0100 50 1 6.3037 3.9401 2.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502077041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:35 Heat of formation + Delta-G solvation = -91.842928 kcal Electronic energy + Delta-G solvation = -28915.157689 eV Core-core repulsion = 24750.098390 eV Total energy + Delta-G solvation = -4165.059299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86025 -39.18657 -38.19202 -37.33065 -35.63636 -34.87448 -33.83043 -32.60359 -31.93371 -31.15713 -28.80960 -27.58657 -25.57067 -24.45759 -23.95764 -23.81843 -22.64580 -21.34217 -20.90340 -19.27010 -19.20568 -17.90535 -17.77548 -16.95289 -16.54679 -16.11383 -15.80121 -15.52366 -15.33684 -15.08359 -14.90632 -14.69501 -14.50814 -14.29498 -14.15977 -13.66809 -13.44549 -13.35342 -13.01373 -12.92798 -12.76733 -12.56904 -12.41726 -11.97913 -11.77474 -11.74491 -11.62449 -11.49402 -11.45972 -11.36803 -11.02186 -10.92172 -10.74986 -10.47340 -10.37093 -10.34528 -10.19005 -10.05872 -9.47868 -8.88624 -8.42148 -8.02654 -7.92439 -6.38662 -3.79336 2.11175 2.43573 3.20249 3.28502 3.34502 3.35621 3.47603 3.92203 3.94767 4.06157 4.25551 4.26130 4.29039 4.47169 4.55937 4.64090 4.72164 4.76154 4.83255 4.88263 4.95888 5.00920 5.03057 5.17528 5.20503 5.27940 5.29280 5.30790 5.36967 5.40908 5.45033 5.51874 5.52945 5.62778 5.68820 5.69423 5.79433 5.88918 5.91792 6.01643 6.02189 6.30119 6.93596 6.96043 7.22996 7.58134 7.73839 7.79956 8.09747 8.64949 9.21154 9.57868 10.09661 10.79170 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.001589 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.369743 B =17618.580187 C =17755.436802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.194 4.194 7 H 0.124 0.876 8 C 0.547 3.453 9 O -0.538 6.538 10 N -0.612 5.612 11 C 0.072 3.928 12 C 0.050 3.950 13 O -0.372 6.372 14 C 0.082 3.918 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.666 5.666 18 C 0.050 3.950 19 C 0.442 3.558 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 C 0.084 3.916 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.038 0.962 44 H 0.357 0.643 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.103 0.897 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.152 -25.780 -0.693 31.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.135 4.135 4 H 0.136 0.864 5 C -0.184 4.184 6 C -0.215 4.215 7 H 0.142 0.858 8 C 0.336 3.664 9 O -0.415 6.415 10 N -0.346 5.346 11 C -0.051 4.051 12 C -0.028 4.028 13 O -0.290 6.290 14 C 0.023 3.977 15 H 0.093 0.907 16 C -0.061 4.061 17 N -0.300 5.300 18 C -0.083 4.083 19 C 0.227 3.773 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.194 1.194 30 C -0.039 4.039 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.177 0.823 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.121 0.879 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.724 -24.996 -1.288 31.258 hybrid contribution 1.132 0.117 0.624 1.298 sum -17.592 -24.879 -0.664 30.477 Atomic orbital electron populations 1.21742 0.95040 1.01724 1.02261 1.21157 0.96428 0.93475 1.02149 1.22512 0.91129 0.98866 1.01004 0.86365 1.23134 1.01700 1.03413 0.90161 1.22305 0.97861 0.98831 1.02519 0.85804 1.19702 0.81441 0.85650 0.79644 1.90701 1.53252 1.48727 1.48786 1.48026 1.05439 1.26846 1.54240 1.22533 0.90931 0.93121 0.98527 1.22931 0.97655 0.89598 0.92615 1.87987 1.33772 1.39267 1.68000 1.22568 0.88923 0.88985 0.97230 0.90657 1.21890 0.97313 0.92927 0.93928 1.60073 1.25465 1.14356 1.30064 1.21678 0.97134 0.94421 0.95018 1.19802 0.84570 0.83935 0.88968 1.90522 1.68443 1.70182 1.17491 1.41858 1.39061 1.27069 1.12136 1.19709 1.19222 1.09477 0.94456 0.87935 1.25250 0.98564 0.97692 0.96426 1.69612 1.42529 1.29221 1.13019 0.85858 0.79225 0.79598 0.79603 1.20413 1.20960 1.19441 1.22315 0.98785 0.88003 0.94770 0.92436 0.92551 0.92452 0.91593 0.91423 0.88141 0.87612 0.90379 0.88615 0.87477 0.92366 0.89453 0.94386 0.82264 0.89586 0.93782 0.77457 0.91912 0.87863 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.87 37.16 0.37 -0.37 16 2 C -0.09 -0.48 6.22 -26.73 -0.17 -0.65 16 3 C -0.12 -0.82 5.25 -90.61 -0.48 -1.29 16 4 H 0.12 1.06 7.60 -51.93 -0.39 0.67 16 5 C -0.15 -0.93 9.88 -26.72 -0.26 -1.19 16 6 C -0.19 -1.41 4.67 -91.77 -0.43 -1.84 16 7 H 0.12 0.63 6.91 -51.93 -0.36 0.27 16 8 C 0.55 5.86 7.49 -10.99 -0.08 5.78 16 9 O -0.54 -7.74 15.73 5.56 0.09 -7.66 16 10 N -0.61 -5.87 3.02 -172.25 -0.52 -6.39 16 11 C 0.07 0.49 6.48 -3.53 -0.02 0.47 16 12 C 0.05 0.41 6.99 37.31 0.26 0.67 16 13 O -0.37 -4.42 9.92 -35.23 -0.35 -4.77 16 14 C 0.08 0.96 3.02 -26.55 -0.08 0.88 16 15 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 16 C 0.07 0.89 5.39 -3.83 -0.02 0.87 16 17 N -0.67 -11.30 6.13 -115.06 -0.70 -12.01 16 18 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 19 C 0.44 10.70 7.82 -10.98 -0.09 10.62 16 20 O -0.58 -16.23 15.78 5.55 0.09 -16.14 16 21 N -0.56 -14.58 5.29 -10.96 -0.06 -14.63 16 22 C -0.30 -8.48 9.68 -14.94 -0.14 -8.62 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.81 13.05 55.50 0.72 -24.09 16 26 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 30 C 0.08 0.88 5.93 -3.51 -0.02 0.86 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.27 7.87 -51.93 -0.41 -0.14 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.11 0.46 8.03 -51.93 -0.42 0.04 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.43 5.83 -51.93 -0.30 0.12 16 40 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.36 6.50 8.00 -39.29 -0.31 6.19 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.10 1.17 7.08 -51.93 -0.37 0.80 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 408.80 15.07 6.16 6.16 Total: -1.00 -34.45 408.80 -9.20 -43.65 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -8.32 Total: 12.05 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.29 Total: 7.56 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.56 Total: -57.12 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.17 Total: -28.56 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.45 -9.20 -43.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502077041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.192 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds