Wall clock time and date at job start Tue Mar 31 2020 23:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 H 1.08999 * 115.55507 * 29.32505 * 3 2 1 5 5 C 1.53010 * 117.49579 * 243.62119 * 3 2 1 6 6 C 1.53003 * 59.99979 * 252.50806 * 5 3 2 7 7 H 1.09000 * 117.51443 * 107.47675 * 6 5 3 8 8 C 1.50690 * 117.50022 * 252.51093 * 6 5 3 9 9 O 1.21283 * 120.00310 * 68.62358 * 8 6 5 10 10 N 1.34784 * 120.00133 * 248.62109 * 8 6 5 11 11 C 1.47148 * 120.97744 * 359.97438 * 10 8 6 12 12 C 1.53300 * 108.38206 * 129.48767 * 11 10 8 13 13 O 1.42955 * 109.22459 * 52.30018 * 12 11 10 14 14 C 1.42973 * 114.20296 * 297.43733 * 13 12 11 15 15 H 1.09005 * 109.48325 * 302.62216 * 14 13 12 16 16 C 1.52997 * 109.54978 * 182.46460 * 14 13 12 17 17 N 1.46894 * 109.47202 * 65.24022 * 16 14 13 18 18 C 1.46905 * 111.00083 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46985 * 179.97438 * 18 17 16 20 20 O 1.21290 * 120.00043 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99829 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00295 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99609 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00168 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00114 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99925 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47215 * 89.99618 * 26 24 22 28 28 H 1.48499 * 109.47095 * 210.00122 * 26 24 22 29 29 H 1.48504 * 109.46965 * 329.99781 * 26 24 22 30 30 C 1.47148 * 120.98330 * 180.02562 * 10 8 6 31 31 H 1.09001 * 109.46952 * 59.99564 * 1 2 3 32 32 H 1.08995 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47112 * 300.00751 * 1 2 3 34 34 H 1.08997 * 109.46816 * 239.99489 * 2 1 3 35 35 H 1.08995 * 109.46977 * 119.99718 * 2 1 3 36 36 H 1.08999 * 117.49848 * 145.01968 * 5 3 2 37 37 H 1.09000 * 117.49660 * 359.97438 * 5 3 2 38 38 H 1.09002 * 109.68553 * 249.20548 * 11 10 8 39 39 H 1.09004 * 109.68438 * 9.76490 * 11 10 8 40 40 H 1.09005 * 109.51071 * 172.22485 * 12 11 10 41 41 H 1.08999 * 109.50922 * 292.37543 * 12 11 10 42 42 H 1.09005 * 109.47326 * 185.24102 * 16 14 13 43 43 H 1.08999 * 109.47242 * 305.23816 * 16 14 13 44 44 H 1.00900 * 111.00102 * 303.95175 * 17 16 14 45 45 H 1.09000 * 109.46807 * 300.00166 * 18 17 16 46 46 H 1.08999 * 109.46808 * 59.99755 * 18 17 16 47 47 H 0.97006 * 119.99477 * 0.02562 * 21 19 18 48 48 H 0.97004 * 120.00444 * 180.02562 * 25 24 22 49 49 H 1.09002 * 109.68336 * 350.23812 * 30 10 8 50 50 H 1.08999 * 109.68144 * 110.75482 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3885 2.1715 0.4816 5 6 2.8441 1.9074 -1.2159 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7718 0.1965 8 6 4.0229 2.8619 0.8913 9 8 3.2159 3.6166 1.3913 10 7 5.3425 3.1001 1.0271 11 6 6.3403 2.1984 0.4299 12 6 7.3349 3.0430 -0.3748 13 8 7.8421 4.0908 0.4550 14 6 6.8480 5.0132 0.9076 15 1 6.3417 5.4529 0.0482 16 6 7.5122 6.1184 1.7312 17 7 8.4004 6.9067 0.8668 18 6 9.0575 7.9793 1.6255 19 6 9.9591 8.7642 0.7077 20 8 10.0460 8.4596 -0.4631 21 7 10.6687 9.8045 1.1879 22 6 11.4892 10.5183 0.3532 23 1 11.5673 10.2466 -0.6892 24 6 12.2212 11.5905 0.8484 25 7 12.1274 11.9201 2.1170 26 14 13.3387 12.5633 -0.2892 27 1 12.5750 13.6844 -0.8935 28 1 14.4835 13.1052 0.4860 29 1 13.8460 11.6736 -1.3646 30 6 5.8280 4.2689 1.7778 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.7214 2.9426 -1.5345 37 1 3.0099 1.1855 -2.0156 38 1 6.8682 1.6615 1.2180 39 1 5.8439 1.4873 -0.2305 40 1 8.1589 2.4134 -0.7107 41 1 6.8301 3.4749 -1.2389 42 1 6.7452 6.7681 2.1530 43 1 8.0931 5.6711 2.5378 44 1 9.0811 6.3159 0.4130 45 1 8.3015 8.6419 2.0468 46 1 9.6493 7.5446 2.4310 47 1 10.5994 10.0478 2.1244 48 1 12.6381 12.6688 2.4627 49 1 4.9923 4.9291 2.0100 50 1 6.3037 3.9401 2.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502077041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:34 Heat of formation + Delta-G solvation = -117.252031 kcal Electronic energy + Delta-G solvation = -28916.259511 eV Core-core repulsion = 24750.098390 eV Total energy + Delta-G solvation = -4166.161121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.63177 -40.23314 -39.83925 -37.99260 -36.87859 -35.93301 -35.69461 -33.35995 -33.13415 -32.68535 -29.70934 -28.78824 -27.03135 -25.51038 -24.82100 -24.49662 -23.62457 -22.21821 -21.42292 -21.07283 -19.98403 -19.91288 -18.55477 -17.92067 -17.81810 -17.23079 -16.87561 -16.60938 -16.38531 -16.26469 -15.88871 -15.78655 -15.61563 -15.30083 -15.17349 -14.96225 -14.70309 -14.41600 -14.29651 -13.62989 -13.57973 -13.43937 -13.25881 -13.14623 -13.07082 -12.98999 -12.81695 -12.63153 -12.41820 -12.27426 -12.19263 -12.11602 -11.94174 -11.76834 -11.51194 -11.30804 -11.20626 -10.97463 -10.81430 -10.36412 -10.01911 -9.67405 -9.36349 -8.46683 -5.95662 1.34601 1.38282 1.41904 1.54846 1.71466 2.04666 2.29329 2.68201 2.79901 2.87611 3.20483 3.32778 3.46176 3.70246 3.77138 3.81331 3.89000 3.90940 4.02555 4.11011 4.22384 4.25322 4.30827 4.33436 4.41407 4.48068 4.48688 4.54362 4.55747 4.61917 4.65427 4.76576 4.78142 4.82964 4.92562 4.93779 4.96001 5.15119 5.21212 5.25831 5.30533 5.40727 5.48877 5.85167 6.06764 6.13984 6.22681 6.36502 6.60012 7.00889 7.12294 7.55604 8.11152 8.70716 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.001589 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.369743 B =17618.580187 C =17755.436802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.123 4.123 4 H 0.090 0.910 5 C -0.137 4.137 6 C -0.193 4.193 7 H 0.155 0.845 8 C 0.538 3.462 9 O -0.586 6.586 10 N -0.612 5.612 11 C 0.074 3.926 12 C 0.042 3.958 13 O -0.391 6.391 14 C 0.092 3.908 15 H 0.054 0.946 16 C 0.071 3.929 17 N -0.682 5.682 18 C 0.065 3.935 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.273 1.273 30 C 0.089 3.911 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.051 0.949 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.348 0.652 45 H 0.107 0.893 46 H 0.068 0.932 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.089 0.911 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.836 -27.697 -0.704 32.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.142 4.142 4 H 0.108 0.892 5 C -0.174 4.174 6 C -0.214 4.214 7 H 0.173 0.827 8 C 0.328 3.672 9 O -0.466 6.466 10 N -0.345 5.345 11 C -0.048 4.048 12 C -0.035 4.035 13 O -0.310 6.310 14 C 0.033 3.967 15 H 0.072 0.928 16 C -0.058 4.058 17 N -0.314 5.314 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.466 4.466 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.198 1.198 30 C -0.035 4.035 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.153 0.847 38 H 0.110 0.890 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.070 0.930 44 H 0.167 0.833 45 H 0.125 0.875 46 H 0.086 0.914 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.405 -26.933 -1.274 32.646 hybrid contribution 1.008 0.691 0.619 1.370 sum -17.397 -26.242 -0.655 31.492 Atomic orbital electron populations 1.21757 0.95240 1.02253 1.01685 1.21150 0.96230 0.92021 1.03174 1.22497 0.90708 0.99579 1.01374 0.89218 1.23210 1.00576 1.03214 0.90404 1.22379 0.98307 0.98201 1.02509 0.82742 1.20378 0.81334 0.86173 0.79268 1.90676 1.54498 1.50589 1.50873 1.48168 1.05802 1.26763 1.53757 1.22728 0.90155 0.92699 0.99172 1.23192 0.98922 0.89177 0.92167 1.87955 1.34356 1.40093 1.68643 1.22340 0.88899 0.88991 0.96475 0.92829 1.21979 0.96911 0.93117 0.93798 1.60061 1.25375 1.14738 1.31266 1.21549 0.96763 0.94529 0.93939 1.20868 0.84119 0.83308 0.89260 1.90488 1.69684 1.71136 1.19743 1.41920 1.39322 1.27597 1.12094 1.19682 1.21479 1.11321 0.94094 0.90365 1.26039 0.99254 0.97886 0.97972 1.69671 1.42825 1.29525 1.14041 0.84921 0.77622 0.78014 0.77725 1.19686 1.19413 1.19754 1.22167 0.97873 0.88348 0.95073 0.92589 0.91408 0.93554 0.89732 0.91088 0.89933 0.84678 0.88987 0.85658 0.85173 0.93095 0.88282 0.92958 0.83312 0.87548 0.91377 0.76917 0.91269 0.89297 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.87 71.98 0.71 -0.62 16 2 C -0.09 -0.72 6.22 30.59 0.19 -0.53 16 3 C -0.12 -1.62 5.25 -10.79 -0.06 -1.68 16 4 H 0.09 1.72 7.60 -2.39 -0.02 1.70 16 5 C -0.14 -1.50 9.88 30.60 0.30 -1.20 16 6 C -0.19 -2.45 4.67 -11.54 -0.05 -2.51 16 7 H 0.16 0.98 6.91 -2.39 -0.02 0.96 16 8 C 0.54 11.32 7.49 87.65 0.66 11.98 16 9 O -0.59 -17.56 15.73 -3.04 -0.05 -17.61 16 10 N -0.61 -11.09 3.02 -817.25 -2.47 -13.56 16 11 C 0.07 0.81 6.48 86.36 0.56 1.37 16 12 C 0.04 0.63 6.99 72.08 0.50 1.13 16 13 O -0.39 -8.93 9.92 -148.98 -1.48 -10.41 16 14 C 0.09 2.13 3.02 30.71 0.09 2.22 16 15 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 16 C 0.07 1.75 5.39 86.30 0.47 2.21 16 17 N -0.68 -22.88 6.13 -517.94 -3.17 -26.06 16 18 C 0.06 2.29 6.17 85.56 0.53 2.81 16 19 C 0.44 21.45 7.82 87.66 0.69 22.14 16 20 O -0.62 -35.75 15.78 -3.06 -0.05 -35.79 16 21 N -0.57 -29.99 5.29 -306.98 -1.62 -31.62 16 22 C -0.34 -19.46 9.68 84.04 0.81 -18.65 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 25 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 26 Si 0.99 43.40 29.55 68.60 2.03 45.42 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 30 C 0.09 1.81 5.93 86.37 0.51 2.33 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.08 0.40 7.87 -2.39 -0.02 0.38 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.14 0.70 8.03 -2.39 -0.02 0.68 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.13 0.63 5.83 -2.38 -0.01 0.62 16 40 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.35 12.73 8.00 -89.69 -0.72 12.01 16 45 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.40 19.66 7.90 -92.70 -0.73 18.93 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 49 H 0.09 2.08 7.08 -2.39 -0.02 2.06 16 50 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -77.12 408.80 -0.65 -77.77 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -0.50 Total: 40.82 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 6.38 Total: 20.85 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.98 Total: -121.05 kcal Atomic # 8 Polarization: -62.24 SS G_CDS: -1.57 Total: -63.82 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -77.12 -0.65 -77.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502077041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.485 kcal (2) G-P(sol) polarization free energy of solvation -77.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds