Wall clock time and date at job start Tue Mar 31 2020 22:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47034 * 2 1 4 4 C 1.52998 * 109.47601 * 240.00100 * 2 1 3 5 5 O 1.45207 * 109.47143 * 119.99659 * 2 1 3 6 6 C 1.34638 * 116.99540 * 60.00426 * 5 2 1 7 7 O 1.21508 * 119.99934 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99831 * 180.02562 * 6 5 2 9 9 C 1.47805 * 134.36609 * 179.97438 * 8 6 5 10 10 C 1.52848 * 85.72535 * 156.20857 * 9 8 6 11 11 C 1.52862 * 121.45521 * 148.80152 * 10 9 8 12 12 C 1.54156 * 86.00388 * 102.97436 * 11 10 9 13 13 N 1.46663 * 121.57246 * 256.88681 * 10 9 8 14 14 C 1.34782 * 134.66534 * 78.17456 * 13 10 9 15 15 O 1.21587 * 119.99406 * 359.90253 * 14 13 10 16 16 N 1.34777 * 120.00413 * 179.90290 * 14 13 10 17 17 C 1.46496 * 119.99847 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47056 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47456 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99609 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00291 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99695 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46874 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46892 * 119.99568 * 23 21 19 26 26 H 1.48497 * 109.46937 * 239.99735 * 23 21 19 27 27 C 1.47812 * 134.36381 * 359.97438 * 8 6 5 28 28 H 1.08998 * 109.47355 * 299.99980 * 1 2 3 29 29 H 1.09000 * 109.47036 * 60.00162 * 1 2 3 30 30 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47319 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47077 * 299.99813 * 3 2 1 33 33 H 1.08998 * 109.47033 * 59.99823 * 3 2 1 34 34 H 1.09002 * 109.46860 * 300.00113 * 4 2 1 35 35 H 1.09000 * 109.47139 * 59.99801 * 4 2 1 36 36 H 1.08993 * 109.47669 * 180.02562 * 4 2 1 37 37 H 1.09000 * 113.82690 * 42.01365 * 9 8 6 38 38 H 1.09000 * 113.94911 * 270.42275 * 9 8 6 39 39 H 1.09002 * 113.80860 * 348.67508 * 11 10 9 40 40 H 1.09001 * 113.81153 * 217.27001 * 11 10 9 41 41 H 1.08995 * 113.72796 * 137.05492 * 12 11 10 42 42 H 1.08999 * 113.72060 * 268.31455 * 12 11 10 43 43 H 0.96998 * 119.99874 * 359.97438 * 16 14 13 44 44 H 1.09004 * 109.47102 * 299.99632 * 17 16 14 45 45 H 1.08999 * 109.47441 * 60.00221 * 17 16 14 46 46 H 1.09004 * 109.46840 * 299.99762 * 18 17 16 47 47 H 1.09004 * 109.47275 * 59.99651 * 18 17 16 48 48 H 0.97002 * 119.99898 * 180.02562 * 22 21 19 49 49 H 1.08997 * 113.83278 * 89.58754 * 27 8 6 50 50 H 1.09002 * 113.82789 * 317.99158 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4172 9 6 1.8693 -4.0500 2.8948 10 6 3.1699 -3.8463 3.6715 11 6 3.4182 -4.5444 5.0086 12 6 4.3233 -5.5073 4.2149 13 7 4.4368 -4.4260 3.2134 14 6 5.3387 -4.1028 2.2654 15 8 5.1620 -3.1232 1.5671 16 7 6.4363 -4.8653 2.0914 17 6 7.4168 -4.5136 1.0614 18 6 8.5569 -5.5338 1.0729 19 6 9.5659 -5.1717 0.0138 20 1 9.4093 -4.3012 -0.6059 21 6 10.6883 -5.9523 -0.1648 22 7 10.8786 -7.0126 0.5896 23 14 11.9386 -5.5038 -1.4782 24 1 11.4945 -4.2759 -2.1856 25 1 13.2583 -5.2596 -0.8425 26 1 12.0566 -6.6197 -2.4509 27 6 2.9014 -2.3436 3.5942 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.9393 -4.8014 2.1082 38 1 0.9926 -4.1781 3.5297 39 1 2.5314 -5.0194 5.4283 40 1 3.9555 -3.9312 5.7321 41 1 5.2623 -5.7405 4.7168 42 1 3.8054 -6.3931 3.8472 43 1 6.5774 -5.6465 2.6488 44 1 6.9346 -4.5192 0.0838 45 1 7.8160 -3.5197 1.2639 46 1 9.0392 -5.5286 2.0505 47 1 8.1574 -6.5275 0.8702 48 1 11.6684 -7.5616 0.4642 49 1 2.3367 -1.9528 4.4407 50 1 3.7847 -1.7499 3.3588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520929703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:45 Heat of formation + Delta-G solvation = -37.625004 kcal Electronic energy + Delta-G solvation = -30538.937692 eV Core-core repulsion = 26376.229459 eV Total energy + Delta-G solvation = -4162.708234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49054 -40.35243 -38.64195 -37.12060 -35.93168 -34.74468 -34.00779 -32.80440 -30.46325 -28.85381 -28.51603 -27.52438 -27.41582 -26.70506 -24.71055 -23.75522 -22.06910 -21.56986 -20.74968 -19.41615 -18.73812 -17.96314 -17.19734 -16.80143 -16.38980 -16.37095 -16.03514 -15.77657 -15.06855 -14.91203 -14.55992 -14.50190 -14.22643 -14.08438 -13.73919 -13.34897 -13.25703 -13.01473 -12.74591 -12.59573 -12.42441 -12.29171 -12.21395 -12.10135 -11.97198 -11.90727 -11.57623 -11.49725 -11.31620 -11.18244 -11.04821 -11.03968 -10.61307 -10.38077 -10.32948 -9.98641 -9.82592 -9.54393 -9.24259 -8.94511 -8.78229 -8.48097 -8.23667 -6.09530 -4.11918 1.91261 2.47924 2.91764 3.28592 3.36115 3.41669 3.42564 3.61711 3.96880 4.19766 4.27288 4.41280 4.45651 4.63725 4.67780 4.80287 4.82464 4.92758 5.01377 5.15428 5.19841 5.26820 5.27798 5.32150 5.34288 5.42801 5.45571 5.49804 5.55306 5.67407 5.73589 5.80486 5.83227 5.88352 5.90164 6.16809 6.32094 6.35502 6.39212 6.49844 6.76530 7.00347 7.38796 7.56377 7.59430 7.62743 7.89818 8.25686 8.35750 8.38880 8.92842 9.00001 9.52895 11.02239 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.002762 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.469673 B =10134.833734 C =12167.122396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.357 6.357 6 C 0.685 3.315 7 O -0.573 6.573 8 N -0.623 5.623 9 C 0.134 3.866 10 C 0.146 3.854 11 C -0.129 4.129 12 C 0.101 3.899 13 N -0.644 5.644 14 C 0.720 3.280 15 O -0.582 6.582 16 N -0.734 5.734 17 C 0.142 3.858 18 C 0.014 3.986 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.111 3.889 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.261 0.739 49 H 0.099 0.901 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.000 8.678 11.064 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.272 6.272 6 C 0.442 3.558 7 O -0.463 6.463 8 N -0.365 5.365 9 C 0.011 3.989 10 C 0.057 3.943 11 C -0.167 4.167 12 C -0.022 4.022 13 N -0.384 5.384 14 C 0.423 3.577 15 O -0.459 6.459 16 N -0.387 5.387 17 C 0.019 3.981 18 C -0.023 4.023 19 C -0.558 4.558 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.013 4.013 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.040 0.960 47 H 0.040 0.960 48 H 0.071 0.929 49 H 0.117 0.883 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.064 9.361 9.837 25.908 hybrid contribution 0.850 -0.275 -0.675 1.119 sum -21.214 9.086 9.162 24.831 Atomic orbital electron populations 1.22506 0.94263 1.04857 1.02209 1.22053 0.94000 0.91569 0.82452 1.21847 1.02616 0.92465 1.02770 1.22502 1.02187 1.03257 0.96103 1.86318 1.71560 1.23304 1.46002 1.17296 0.77519 0.80187 0.80840 1.90874 1.42013 1.70575 1.42876 1.48292 1.53883 1.13655 1.20664 1.23315 0.96497 0.82584 0.96539 1.22536 0.85146 0.94872 0.91737 1.23298 1.00740 0.97820 0.94873 1.23169 1.00278 0.91684 0.87086 1.48952 1.21194 1.30553 1.37704 1.15650 0.79767 0.83290 0.78965 1.90929 1.77897 1.29195 1.47901 1.45493 1.22566 1.30275 1.40368 1.21599 0.88296 0.99953 0.88254 1.19319 0.91429 0.93613 0.97987 1.21088 1.05342 1.11452 1.17949 0.92191 1.24993 0.98092 0.94895 0.96322 1.69964 1.28155 1.15921 1.39325 0.86458 0.81056 0.78553 0.81521 1.19560 1.20918 1.20933 1.23308 0.94805 0.96288 0.86894 0.92394 0.91223 0.89525 0.91253 0.90222 0.91677 0.89536 0.91357 0.91747 0.89252 0.87887 0.88941 0.87936 0.89585 0.89693 0.77487 0.92890 0.92809 0.95988 0.96015 0.92917 0.88332 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.37 37.15 0.31 -1.70 16 2 C 0.14 1.73 1.13 -90.62 -0.10 1.63 16 3 C -0.14 -1.37 8.85 37.16 0.33 -1.05 16 4 C -0.18 -2.50 8.37 37.16 0.31 -2.19 16 5 O -0.36 -5.53 9.87 -40.32 -0.40 -5.93 16 6 C 0.68 11.16 8.22 54.05 0.44 11.60 16 7 O -0.57 -10.27 12.61 -19.28 -0.24 -10.51 16 8 N -0.62 -8.48 3.61 -190.34 -0.69 -9.17 16 9 C 0.13 1.34 8.73 -3.41 -0.03 1.31 16 10 C 0.15 1.41 1.73 -137.65 -0.24 1.17 16 11 C -0.13 -0.70 8.06 -26.22 -0.21 -0.91 16 12 C 0.10 0.78 8.47 -2.87 -0.02 0.75 16 13 N -0.64 -8.25 3.62 -173.27 -0.63 -8.88 16 14 C 0.72 13.12 8.76 -86.91 -0.76 12.36 16 15 O -0.58 -13.00 16.47 5.29 0.09 -12.91 16 16 N -0.73 -13.48 5.56 -65.22 -0.36 -13.84 16 17 C 0.14 3.13 5.61 -4.04 -0.02 3.11 16 18 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 19 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 20 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 23 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.11 1.18 8.43 -3.40 -0.03 1.16 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.39 6.26 8.10 -40.82 -0.33 5.93 16 44 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.10 1.32 7.85 -51.93 -0.41 0.91 16 LS Contribution 410.61 15.07 6.19 6.19 Total: -1.00 -37.19 410.61 -9.40 -46.60 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.50 Total: 3.31 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -0.58 Total: 14.09 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.94 Total: -57.40 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.55 Total: -29.35 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.19 -9.40 -46.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520929703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.971 kcal (2) G-P(sol) polarization free energy of solvation -37.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds