Wall clock time and date at job start Tue Mar 31 2020 23:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47196 * 2 1 4 4 C 1.42904 * 114.00168 * 185.73916 * 3 2 1 5 5 C 1.52996 * 109.47301 * 210.00858 * 4 3 2 6 6 N 1.46499 * 109.47360 * 65.00267 * 5 4 3 7 7 C 1.34252 * 125.75844 * 124.99576 * 6 5 4 8 8 C 1.38044 * 107.41936 * 180.02562 * 7 6 5 9 9 C 1.47429 * 126.41561 * 179.97438 * 8 7 6 10 10 O 1.21605 * 119.99667 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99898 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99726 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47456 * 34.99700 * 12 11 9 14 14 C 1.50691 * 109.47211 * 155.00006 * 12 11 9 15 15 H 1.08002 * 120.00027 * 0.02562 * 14 12 11 16 16 C 1.37880 * 120.00292 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99673 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00049 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47033 * 60.00424 * 18 16 14 20 20 H 1.48502 * 109.46740 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46941 * 299.99975 * 18 16 14 22 22 C 1.53006 * 109.46803 * 274.99935 * 12 11 9 23 23 C 1.52996 * 109.47144 * 65.00270 * 22 12 11 24 24 C 1.41293 * 107.17078 * 0.23109 * 8 7 6 25 25 N 1.30446 * 108.01625 * 359.61247 * 24 8 7 26 26 O 1.42902 * 109.47004 * 90.00778 * 4 3 2 27 27 C 1.42903 * 114.00080 * 286.23665 * 26 4 3 28 28 C 1.52995 * 109.47288 * 186.67345 * 27 26 4 29 29 H 1.09008 * 109.47322 * 300.00382 * 1 2 3 30 30 H 1.08999 * 109.47171 * 60.00089 * 1 2 3 31 31 H 1.09002 * 109.47193 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47240 * 239.99788 * 2 1 3 33 33 H 1.09006 * 109.47145 * 119.99516 * 2 1 3 34 34 H 1.09001 * 109.47202 * 330.01542 * 4 3 2 35 35 H 1.09004 * 109.46869 * 304.99976 * 5 4 3 36 36 H 1.09004 * 109.46929 * 184.99961 * 5 4 3 37 37 H 1.08004 * 126.28971 * 0.02562 * 7 6 5 38 38 H 0.96991 * 120.00529 * 0.02562 * 11 9 8 39 39 H 0.97003 * 119.99769 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.47016 * 184.99974 * 22 12 11 41 41 H 1.09000 * 109.47251 * 304.99842 * 22 12 11 42 42 H 1.09000 * 109.47045 * 179.97438 * 23 22 12 43 43 H 1.09000 * 109.47364 * 299.99508 * 23 22 12 44 44 H 1.09000 * 109.47396 * 59.99661 * 23 22 12 45 45 H 1.07997 * 125.98723 * 179.74018 * 24 8 7 46 46 H 1.09006 * 109.46803 * 306.66682 * 27 26 4 47 47 H 1.08997 * 109.47557 * 66.66327 * 27 26 4 48 48 H 1.08998 * 109.46927 * 299.99475 * 28 27 26 49 49 H 1.09003 * 109.47652 * 59.99487 * 28 27 26 50 50 H 1.09002 * 109.47659 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4247 1.4623 -0.1305 5 6 3.9027 2.7236 0.5915 6 7 3.6558 2.5868 2.0290 7 6 4.5753 2.7150 2.9987 8 6 3.9352 2.5116 4.2047 9 6 4.5538 2.5558 5.5422 10 8 5.7416 2.7905 5.6553 11 7 3.8028 2.3360 6.6396 12 6 4.4175 2.3805 7.9687 13 1 5.1980 3.1412 7.9829 14 6 3.3683 2.7180 8.9963 15 1 2.3457 2.8826 8.6901 16 6 3.7134 2.8158 10.3276 17 7 4.9584 2.6149 10.7006 18 14 2.4128 3.2349 11.6013 19 1 1.3489 2.1992 11.5817 20 1 3.0358 3.2798 12.9486 21 1 1.8201 4.5596 11.2861 22 6 5.0292 1.0161 8.2935 23 6 6.1786 0.7291 7.3255 24 6 2.5774 2.2474 3.9169 25 7 2.4217 2.2997 2.6229 26 8 3.7705 1.5457 -1.5146 27 6 3.6546 0.3074 -2.2183 28 6 4.2036 0.4735 -3.6367 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9024 0.5877 0.3111 35 1 3.3596 3.5884 0.2102 36 1 4.9702 2.8594 0.4175 37 1 5.6234 2.9365 2.8606 38 1 2.8555 2.1485 6.5494 39 1 5.2013 2.6840 11.6371 40 1 5.4078 1.0218 9.3156 41 1 4.2674 0.2430 8.1926 42 1 6.6147 -0.2427 7.5572 43 1 5.8000 0.7233 6.3033 44 1 6.9404 1.5021 7.4264 45 1 1.8037 2.0406 4.6415 46 1 4.2238 -0.4618 -1.6962 47 1 2.6061 0.0136 -2.2666 48 1 3.6346 1.2427 -4.1588 49 1 5.2522 0.7673 -3.5884 50 1 4.1157 -0.4712 -4.1734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567317837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:41 Heat of formation + Delta-G solvation = -58.703029 kcal Electronic energy + Delta-G solvation = -29899.130092 eV Core-core repulsion = 25735.507846 eV Total energy + Delta-G solvation = -4163.622245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26048 -39.63970 -38.46701 -36.74585 -34.92491 -34.15606 -32.34014 -31.91132 -31.00356 -30.92730 -29.97008 -28.27481 -26.77071 -23.89782 -23.55246 -23.10017 -22.74492 -22.20655 -20.66511 -19.90674 -19.14353 -18.22733 -17.91832 -17.61136 -16.27528 -15.94514 -15.67967 -15.27028 -15.10905 -15.08166 -14.55651 -14.35430 -14.26071 -14.11967 -13.79454 -13.47833 -13.15246 -12.91857 -12.73095 -12.65449 -12.48831 -12.45013 -12.24590 -12.10607 -11.89943 -11.57025 -11.48814 -11.41134 -11.19310 -10.97638 -10.79490 -10.75429 -10.32706 -10.26834 -10.10656 -10.03670 -9.56794 -9.51670 -9.01301 -8.92802 -8.50316 -8.43817 -7.69101 -6.07138 -4.16003 1.69229 2.12826 2.47630 3.04533 3.29249 3.34369 3.35821 3.38098 4.15335 4.19269 4.23809 4.32780 4.45218 4.51133 4.64870 4.67088 4.75120 4.85601 4.86782 4.91678 5.02939 5.07194 5.11905 5.24121 5.24939 5.36713 5.45902 5.54703 5.59991 5.62950 5.64127 5.87434 6.07010 6.45268 6.50513 6.53271 6.58809 6.73496 6.76202 6.85260 7.11884 7.27239 7.44369 7.55779 7.65006 7.69144 7.82719 7.98010 8.24649 8.78614 8.86034 9.26943 9.51858 10.98149 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002213 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.546659 B =12651.447601 C =13333.287889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.367 6.367 4 C 0.238 3.762 5 C 0.151 3.849 6 N -0.368 5.368 7 C 0.112 3.888 8 C -0.273 4.273 9 C 0.578 3.422 10 O -0.559 6.559 11 N -0.703 5.703 12 C 0.272 3.728 13 H 0.049 0.951 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.127 4.127 23 C -0.137 4.137 24 C 0.073 3.927 25 N -0.276 5.276 26 O -0.389 6.389 27 C 0.052 3.948 28 C -0.151 4.151 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.186 0.814 38 H 0.386 0.614 39 H 0.264 0.736 40 H 0.098 0.902 41 H 0.030 0.970 42 H 0.020 0.980 43 H 0.039 0.961 44 H 0.049 0.951 45 H 0.189 0.811 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -6.088 -25.649 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 O -0.287 6.287 4 C 0.141 3.859 5 C 0.029 3.971 6 N -0.150 5.150 7 C -0.037 4.037 8 C -0.287 4.287 9 C 0.364 3.636 10 O -0.439 6.439 11 N -0.350 5.350 12 C 0.170 3.830 13 H 0.067 0.933 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.166 4.166 23 C -0.194 4.194 24 C -0.116 4.116 25 N -0.095 5.095 26 O -0.310 6.310 27 C -0.024 4.024 28 C -0.208 4.208 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.203 0.797 38 H 0.219 0.781 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.049 0.951 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.206 0.794 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.038 -5.687 -26.545 27.446 hybrid contribution -0.488 -0.352 1.423 1.545 sum -4.526 -6.039 -25.122 26.231 Atomic orbital electron populations 1.21701 0.93233 1.02119 1.03473 1.22721 0.96437 0.83610 0.99748 1.88144 1.21255 1.26741 1.92514 1.23251 0.82727 0.97593 0.82295 1.21335 1.02922 0.97710 0.75141 1.48151 1.06558 1.54714 1.05555 1.22939 0.96117 0.97382 0.87247 1.20691 0.94346 1.18968 0.94734 1.17184 0.86184 0.77341 0.82909 1.90730 1.15198 1.51019 1.86982 1.46281 1.11710 1.69604 1.07411 1.18757 0.93669 0.94206 0.76318 0.93282 1.21209 0.95076 1.49081 0.91744 0.92136 1.24881 0.95550 0.94915 0.98358 1.69888 1.16657 1.48403 1.17061 0.86531 0.81406 0.78975 0.80304 1.20201 1.21215 1.20212 1.21932 0.95630 0.97573 1.01466 1.21835 0.99640 0.98512 0.99404 1.24214 0.96244 0.97729 0.93364 1.77366 1.01492 1.22409 1.08222 1.87963 1.87095 1.33577 1.22363 1.22722 1.00238 0.85790 0.93697 1.21762 1.02114 1.02689 0.94266 0.91167 0.92047 0.91254 0.93499 0.93177 0.92304 0.87707 0.86200 0.79739 0.78138 0.92582 0.88365 0.95101 0.96058 0.94167 0.93179 0.79450 0.93267 0.92449 0.91578 0.91677 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.05 0.46 6.25 37.16 0.23 0.69 16 3 O -0.37 -4.13 9.19 -59.04 -0.54 -4.68 16 4 C 0.24 2.31 3.02 37.16 0.11 2.42 16 5 C 0.15 1.40 6.56 -4.04 -0.03 1.37 16 6 N -0.37 -4.55 3.65 -60.81 -0.22 -4.77 16 7 C 0.11 1.51 11.25 -16.56 -0.19 1.32 16 8 C -0.27 -4.40 6.13 -105.07 -0.64 -5.05 16 9 C 0.58 11.70 6.38 -12.52 -0.08 11.62 16 10 O -0.56 -13.04 14.03 5.27 0.07 -12.96 16 11 N -0.70 -14.70 5.01 -56.01 -0.28 -14.99 16 12 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 13 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 14 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 17 N -0.88 -24.72 11.29 55.43 0.63 -24.10 16 18 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 23 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 24 C 0.07 1.04 11.50 -16.98 -0.20 0.85 16 25 N -0.28 -3.91 11.45 30.86 0.35 -3.56 16 26 O -0.39 -3.62 10.24 -59.04 -0.60 -4.23 16 27 C 0.05 0.36 5.78 37.15 0.21 0.58 16 28 C -0.15 -0.83 10.28 37.15 0.38 -0.45 16 29 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.35 5.03 -51.93 -0.26 0.09 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.56 7.63 -51.93 -0.40 0.16 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.12 0.76 8.06 -51.93 -0.42 0.34 16 37 H 0.19 2.09 8.06 -52.48 -0.42 1.66 16 38 H 0.39 7.04 7.49 -40.82 -0.31 6.73 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.10 2.64 5.95 -51.93 -0.31 2.34 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 44 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 45 H 0.19 2.24 7.50 -52.49 -0.39 1.85 16 46 H 0.05 0.30 8.00 -51.93 -0.42 -0.11 16 47 H 0.06 0.40 5.84 -51.93 -0.30 0.09 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 405.49 15.07 6.11 6.11 Total: -1.00 -32.72 405.49 -7.78 -40.51 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.09 Total: 6.44 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -0.19 Total: 0.59 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.48 Total: -47.41 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.07 Total: -21.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.72 -7.78 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567317837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.196 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds