Wall clock time and date at job start Tue Mar 31 2020 23:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46790 * 2 1 4 4 C 1.42909 * 113.99502 * 185.48416 * 3 2 1 5 5 C 1.53002 * 109.46859 * 207.41382 * 4 3 2 6 6 N 1.46498 * 109.47326 * 175.00172 * 5 4 3 7 7 C 1.34251 * 125.75821 * 125.31356 * 6 5 4 8 8 C 1.38043 * 107.42206 * 180.14673 * 7 6 5 9 9 C 1.47421 * 126.42202 * 179.87106 * 8 7 6 10 10 O 1.21611 * 119.99426 * 359.71407 * 9 8 7 11 11 N 1.34777 * 120.00539 * 179.71231 * 9 8 7 12 12 C 1.46496 * 119.99995 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47253 * 324.99932 * 12 11 9 14 14 C 1.50706 * 109.47018 * 204.99742 * 12 11 9 15 15 H 1.07999 * 119.99819 * 330.45753 * 14 12 11 16 16 C 1.37877 * 119.99619 * 150.45142 * 14 12 11 17 17 N 1.31520 * 119.99746 * 182.43466 * 16 14 12 18 18 Si 1.86797 * 120.00267 * 2.43582 * 16 14 12 19 19 H 1.48496 * 109.47225 * 265.04758 * 18 16 14 20 20 H 1.48500 * 109.47152 * 25.04800 * 18 16 14 21 21 H 1.48503 * 109.46959 * 145.04637 * 18 16 14 22 22 C 1.53001 * 109.47066 * 85.00098 * 12 11 9 23 23 C 1.53002 * 109.47302 * 294.22804 * 22 12 11 24 24 C 1.41299 * 107.16637 * 359.60806 * 8 7 6 25 25 N 1.30452 * 108.02264 * 0.24358 * 24 8 7 26 26 O 1.42894 * 109.47175 * 87.41182 * 4 3 2 27 27 C 1.42896 * 114.00227 * 285.46789 * 26 4 3 28 28 C 1.53002 * 109.47131 * 186.22005 * 27 26 4 29 29 H 1.08996 * 109.47403 * 59.99933 * 1 2 3 30 30 H 1.09002 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47396 * 300.00150 * 1 2 3 32 32 H 1.08997 * 109.47396 * 239.99850 * 2 1 3 33 33 H 1.09001 * 109.47207 * 119.99372 * 2 1 3 34 34 H 1.08999 * 109.47120 * 327.40604 * 4 3 2 35 35 H 1.09000 * 109.47030 * 54.99413 * 5 4 3 36 36 H 1.09003 * 109.46765 * 294.99748 * 5 4 3 37 37 H 1.08003 * 126.29192 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99424 * 0.02562 * 11 9 8 39 39 H 0.96997 * 120.00031 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.47132 * 54.22541 * 22 12 11 41 41 H 1.08997 * 109.47388 * 174.22601 * 22 12 11 42 42 H 1.08997 * 109.47240 * 180.02562 * 23 22 12 43 43 H 1.09008 * 109.46516 * 299.99478 * 23 22 12 44 44 H 1.08997 * 109.47064 * 59.99599 * 23 22 12 45 45 H 1.07998 * 125.99000 * 180.20474 * 24 8 7 46 46 H 1.09000 * 109.46623 * 306.21686 * 27 26 4 47 47 H 1.08998 * 109.47455 * 66.21720 * 27 26 4 48 48 H 1.08997 * 109.47019 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.47393 * 299.99832 * 28 27 26 50 50 H 1.09009 * 109.46865 * 60.00197 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4252 1.4621 -0.1248 5 6 3.8926 2.7577 0.5416 6 7 5.3562 2.8180 0.5192 7 6 6.0924 3.8214 0.0158 8 6 7.4204 3.4867 0.1886 9 6 8.5862 4.2928 -0.2170 10 8 8.4223 5.3651 -0.7667 11 7 9.8336 3.8414 0.0214 12 6 10.9920 4.6423 -0.3822 13 1 10.7670 5.1633 -1.3128 14 6 12.1805 3.7387 -0.5872 15 1 12.2680 2.8243 -0.0191 16 6 13.1561 4.0793 -1.4999 17 7 14.1689 3.2678 -1.7136 18 14 13.0396 5.6933 -2.4331 19 1 12.3893 5.4593 -3.7474 20 1 12.2337 6.6622 -1.6476 21 1 14.4032 6.2415 -2.6460 22 6 11.3109 5.6646 0.7105 23 6 10.1628 6.6700 0.8191 24 6 7.4532 2.2295 0.8328 25 7 6.2224 1.8418 1.0242 26 8 3.7816 1.4826 -1.5084 27 6 3.6928 0.2091 -2.1505 28 6 4.2410 0.3167 -3.5748 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9027 0.6111 0.3609 35 1 3.5436 2.7817 1.5739 36 1 3.4855 3.6119 0.0005 37 1 5.7151 4.7234 -0.4430 38 1 9.9642 2.9859 0.4596 39 1 14.8550 3.5073 -2.3560 40 1 11.4352 5.1506 1.6638 41 1 12.2318 6.1904 0.4585 42 1 10.3903 7.3986 1.5973 43 1 10.0386 7.1840 -0.1341 44 1 9.2419 6.1442 1.0711 45 1 8.3416 1.6847 1.1164 46 1 4.2767 -0.5215 -1.5907 47 1 2.6506 -0.1083 -2.1853 48 1 4.1736 -0.6547 -4.0644 49 1 3.6572 1.0474 -4.1347 50 1 5.2833 0.6341 -3.5400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567317838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:44 Heat of formation + Delta-G solvation = -59.472645 kcal Electronic energy + Delta-G solvation = -29979.905592 eV Core-core repulsion = 25816.249973 eV Total energy + Delta-G solvation = -4163.655619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.31047 -39.71667 -38.62176 -36.79961 -35.05710 -34.20370 -32.32352 -32.01201 -31.35746 -31.03262 -30.10609 -28.37012 -27.22404 -23.96710 -23.53037 -23.02418 -22.75423 -22.29563 -20.72879 -20.01624 -19.34899 -18.30207 -17.92168 -17.66288 -16.61195 -16.14720 -15.53425 -15.46639 -15.20946 -15.16605 -14.78051 -14.45899 -14.17158 -14.13099 -13.93194 -13.39180 -13.29185 -13.04633 -12.76441 -12.71329 -12.62412 -12.41028 -12.30520 -12.28925 -12.10236 -11.76998 -11.73205 -11.59576 -11.55362 -10.96171 -10.86444 -10.63235 -10.61158 -10.37699 -10.07176 -9.88022 -9.74904 -9.57446 -9.12930 -9.04761 -8.68281 -8.55799 -7.85899 -6.17507 -4.20028 1.66070 2.10701 2.39257 2.92790 3.30217 3.36852 3.39318 3.47807 4.08500 4.12264 4.25560 4.37183 4.38616 4.48937 4.58032 4.65639 4.72646 4.79480 4.83486 4.84927 4.98792 5.03711 5.06388 5.20554 5.22058 5.35552 5.43024 5.50089 5.56133 5.59142 5.63770 5.86181 5.99107 6.14133 6.16501 6.33846 6.47293 6.53658 6.67911 6.75526 6.80922 6.86460 7.06261 7.10169 7.37730 7.46300 7.57311 7.65181 8.23766 8.68495 8.83682 9.13847 9.45503 10.94317 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.002389 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.504224 B =11719.347293 C =12389.840191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.391 6.391 4 C 0.236 3.764 5 C 0.153 3.847 6 N -0.363 5.363 7 C 0.131 3.869 8 C -0.278 4.278 9 C 0.580 3.420 10 O -0.562 6.562 11 N -0.698 5.698 12 C 0.241 3.759 13 H 0.050 0.950 14 C -0.529 4.529 15 H 0.078 0.922 16 C 0.080 3.920 17 N -0.891 5.891 18 Si 0.869 3.131 19 H -0.276 1.276 20 H -0.253 1.253 21 H -0.286 1.286 22 C -0.127 4.127 23 C -0.144 4.144 24 C 0.087 3.913 25 N -0.307 5.307 26 O -0.382 6.382 27 C 0.051 3.949 28 C -0.152 4.152 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.186 0.814 38 H 0.391 0.609 39 H 0.266 0.734 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.191 0.809 46 H 0.049 0.951 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.895 -7.033 4.062 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.312 6.312 4 C 0.139 3.861 5 C 0.031 3.969 6 N -0.143 5.143 7 C -0.019 4.019 8 C -0.293 4.293 9 C 0.366 3.634 10 O -0.443 6.443 11 N -0.345 5.345 12 C 0.138 3.862 13 H 0.068 0.932 14 C -0.567 4.567 15 H 0.096 0.904 16 C -0.124 4.124 17 N -0.528 5.528 18 Si 0.696 3.304 19 H -0.202 1.202 20 H -0.176 1.176 21 H -0.212 1.212 22 C -0.166 4.166 23 C -0.202 4.202 24 C -0.101 4.101 25 N -0.127 5.127 26 O -0.303 6.303 27 C -0.024 4.024 28 C -0.209 4.209 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.203 0.797 38 H 0.224 0.776 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.208 0.792 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.772 -6.909 3.951 27.929 hybrid contribution 0.752 0.423 -0.601 1.051 sum -26.019 -6.486 3.350 27.024 Atomic orbital electron populations 1.21749 0.93163 1.02492 1.03391 1.22880 0.96278 0.83203 1.00796 1.87951 1.22437 1.27671 1.93116 1.23361 0.80988 0.98398 0.83329 1.21365 0.74843 0.98177 1.02552 1.48065 1.05661 1.15056 1.45568 1.22899 0.90762 0.93367 0.94877 1.20578 0.93840 0.99409 1.15463 1.17232 0.82490 0.84788 0.78873 1.90724 1.86229 1.22671 1.44631 1.46231 1.05285 1.23215 1.59753 1.19102 0.83402 0.89979 0.93700 0.93233 1.21028 1.03849 1.08256 1.23604 0.90373 1.24897 0.95055 0.96738 0.95708 1.69891 1.11877 1.36309 1.34733 0.86968 0.77651 0.84840 0.80975 1.20177 1.17640 1.21196 1.22132 0.97370 0.96975 1.00155 1.21899 0.99357 0.98718 1.00176 1.24118 0.95503 0.94362 0.96096 1.77041 1.00429 1.12772 1.22426 1.88075 1.86900 1.31699 1.23615 1.22745 0.99657 0.85207 0.94840 1.21756 1.02544 1.02499 0.94127 0.91680 0.90871 0.91603 0.92428 0.92791 0.91015 0.87189 0.86658 0.79730 0.77552 0.92387 0.93023 0.92215 0.95311 0.93140 0.92973 0.79225 0.93233 0.92717 0.90959 0.91690 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.04 0.30 6.28 37.16 0.23 0.54 16 3 O -0.39 -3.60 10.20 -59.04 -0.60 -4.20 16 4 C 0.24 2.32 2.93 37.16 0.11 2.42 16 5 C 0.15 1.40 6.52 -4.04 -0.03 1.37 16 6 N -0.36 -4.45 3.60 -60.81 -0.22 -4.67 16 7 C 0.13 1.79 11.25 -16.57 -0.19 1.60 16 8 C -0.28 -4.43 6.13 -105.07 -0.64 -5.07 16 9 C 0.58 11.37 6.42 -12.52 -0.08 11.29 16 10 O -0.56 -12.59 14.03 5.27 0.07 -12.51 16 11 N -0.70 -14.11 5.02 -56.01 -0.28 -14.39 16 12 C 0.24 5.71 1.77 -69.08 -0.12 5.58 16 13 H 0.05 1.29 5.25 -51.93 -0.27 1.02 16 14 C -0.53 -14.19 9.06 -34.44 -0.31 -14.50 16 15 H 0.08 2.20 8.05 -52.49 -0.42 1.78 16 16 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 17 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 18 Si 0.87 21.49 26.33 -169.99 -4.48 17.02 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.25 -6.07 5.92 56.52 0.33 -5.74 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.13 -2.78 5.15 -26.73 -0.14 -2.92 16 23 C -0.14 -2.92 8.53 37.16 0.32 -2.61 16 24 C 0.09 1.22 11.50 -16.97 -0.20 1.02 16 25 N -0.31 -4.19 12.24 30.86 0.38 -3.81 16 26 O -0.38 -4.43 10.19 -59.04 -0.60 -5.03 16 27 C 0.05 0.48 5.85 37.16 0.22 0.69 16 28 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.37 4.78 -51.93 -0.25 0.12 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.73 7.55 -51.93 -0.39 0.33 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.12 0.89 8.06 -51.93 -0.42 0.47 16 37 H 0.19 2.18 8.06 -52.48 -0.42 1.76 16 38 H 0.39 6.99 7.54 -40.82 -0.31 6.68 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.35 6.80 -51.93 -0.35 0.99 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.05 1.08 7.89 -51.92 -0.41 0.68 16 44 H 0.05 1.05 5.63 -51.93 -0.29 0.76 16 45 H 0.19 2.19 7.50 -52.49 -0.39 1.80 16 46 H 0.05 0.44 8.00 -51.93 -0.42 0.03 16 47 H 0.05 0.43 5.56 -51.93 -0.29 0.14 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -33.72 403.50 -7.10 -40.82 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.07 Total: 6.10 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.16 Total: 0.18 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.65 Total: -48.45 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.13 Total: -21.74 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.48 Total: 17.02 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.72 -7.10 -40.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567317838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.648 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds