Wall clock time and date at job start Tue Mar 31 2020 23:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46790 * 2 1 4 4 C 1.42909 * 113.99502 * 185.48416 * 3 2 1 5 5 C 1.53002 * 109.46859 * 207.41382 * 4 3 2 6 6 N 1.46498 * 109.47326 * 175.00172 * 5 4 3 7 7 C 1.34251 * 125.75821 * 125.31356 * 6 5 4 8 8 C 1.38043 * 107.42206 * 180.14673 * 7 6 5 9 9 C 1.47421 * 126.42202 * 179.87106 * 8 7 6 10 10 O 1.21611 * 119.99426 * 359.71407 * 9 8 7 11 11 N 1.34777 * 120.00539 * 179.71231 * 9 8 7 12 12 C 1.46496 * 119.99995 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47253 * 324.99932 * 12 11 9 14 14 C 1.50706 * 109.47018 * 204.99742 * 12 11 9 15 15 H 1.07999 * 119.99819 * 330.45753 * 14 12 11 16 16 C 1.37877 * 119.99619 * 150.45142 * 14 12 11 17 17 N 1.31520 * 119.99746 * 182.43466 * 16 14 12 18 18 Si 1.86797 * 120.00267 * 2.43582 * 16 14 12 19 19 H 1.48496 * 109.47225 * 265.04758 * 18 16 14 20 20 H 1.48500 * 109.47152 * 25.04800 * 18 16 14 21 21 H 1.48503 * 109.46959 * 145.04637 * 18 16 14 22 22 C 1.53001 * 109.47066 * 85.00098 * 12 11 9 23 23 C 1.53002 * 109.47302 * 294.22804 * 22 12 11 24 24 C 1.41299 * 107.16637 * 359.60806 * 8 7 6 25 25 N 1.30452 * 108.02264 * 0.24358 * 24 8 7 26 26 O 1.42894 * 109.47175 * 87.41182 * 4 3 2 27 27 C 1.42896 * 114.00227 * 285.46789 * 26 4 3 28 28 C 1.53002 * 109.47131 * 186.22005 * 27 26 4 29 29 H 1.08996 * 109.47403 * 59.99933 * 1 2 3 30 30 H 1.09002 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47396 * 300.00150 * 1 2 3 32 32 H 1.08997 * 109.47396 * 239.99850 * 2 1 3 33 33 H 1.09001 * 109.47207 * 119.99372 * 2 1 3 34 34 H 1.08999 * 109.47120 * 327.40604 * 4 3 2 35 35 H 1.09000 * 109.47030 * 54.99413 * 5 4 3 36 36 H 1.09003 * 109.46765 * 294.99748 * 5 4 3 37 37 H 1.08003 * 126.29192 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99424 * 0.02562 * 11 9 8 39 39 H 0.96997 * 120.00031 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.47132 * 54.22541 * 22 12 11 41 41 H 1.08997 * 109.47388 * 174.22601 * 22 12 11 42 42 H 1.08997 * 109.47240 * 180.02562 * 23 22 12 43 43 H 1.09008 * 109.46516 * 299.99478 * 23 22 12 44 44 H 1.08997 * 109.47064 * 59.99599 * 23 22 12 45 45 H 1.07998 * 125.99000 * 180.20474 * 24 8 7 46 46 H 1.09000 * 109.46623 * 306.21686 * 27 26 4 47 47 H 1.08998 * 109.47455 * 66.21720 * 27 26 4 48 48 H 1.08997 * 109.47019 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.47393 * 299.99832 * 28 27 26 50 50 H 1.09009 * 109.46865 * 60.00197 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4252 1.4621 -0.1248 5 6 3.8926 2.7577 0.5416 6 7 5.3562 2.8180 0.5192 7 6 6.0924 3.8214 0.0158 8 6 7.4204 3.4867 0.1886 9 6 8.5862 4.2928 -0.2170 10 8 8.4223 5.3651 -0.7667 11 7 9.8336 3.8414 0.0214 12 6 10.9920 4.6423 -0.3822 13 1 10.7670 5.1633 -1.3128 14 6 12.1805 3.7387 -0.5872 15 1 12.2680 2.8243 -0.0191 16 6 13.1561 4.0793 -1.4999 17 7 14.1689 3.2678 -1.7136 18 14 13.0396 5.6933 -2.4331 19 1 12.3893 5.4593 -3.7474 20 1 12.2337 6.6622 -1.6476 21 1 14.4032 6.2415 -2.6460 22 6 11.3109 5.6646 0.7105 23 6 10.1628 6.6700 0.8191 24 6 7.4532 2.2295 0.8328 25 7 6.2224 1.8418 1.0242 26 8 3.7816 1.4826 -1.5084 27 6 3.6928 0.2091 -2.1505 28 6 4.2410 0.3167 -3.5748 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9027 0.6111 0.3609 35 1 3.5436 2.7817 1.5739 36 1 3.4855 3.6119 0.0005 37 1 5.7151 4.7234 -0.4430 38 1 9.9642 2.9859 0.4596 39 1 14.8550 3.5073 -2.3560 40 1 11.4352 5.1506 1.6638 41 1 12.2318 6.1904 0.4585 42 1 10.3903 7.3986 1.5973 43 1 10.0386 7.1840 -0.1341 44 1 9.2419 6.1442 1.0711 45 1 8.3416 1.6847 1.1164 46 1 4.2767 -0.5215 -1.5907 47 1 2.6506 -0.1083 -2.1853 48 1 4.1736 -0.6547 -4.0644 49 1 3.6572 1.0474 -4.1347 50 1 5.2833 0.6341 -3.5400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567317838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:43 Heat of formation + Delta-G solvation = -82.605915 kcal Electronic energy + Delta-G solvation = -29980.908726 eV Core-core repulsion = 25816.249973 eV Total energy + Delta-G solvation = -4164.658752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.38846 -40.52423 -40.13389 -37.49869 -36.84382 -35.09538 -34.30752 -33.17445 -32.59407 -31.65644 -31.24412 -29.65579 -28.77163 -25.00757 -24.48739 -24.22349 -23.77027 -23.36199 -21.82282 -21.49361 -20.95383 -19.49667 -18.80214 -18.64576 -18.15145 -17.30839 -16.92319 -16.62297 -16.35425 -15.97951 -15.89941 -15.78160 -15.55439 -15.04079 -14.87655 -14.78889 -14.72227 -14.17728 -13.83189 -13.79090 -13.64880 -13.58173 -13.54799 -13.27587 -13.10144 -12.88448 -12.87302 -12.83394 -12.55185 -12.41543 -12.29277 -12.17306 -11.92364 -11.79110 -11.56133 -11.12393 -11.06617 -10.82552 -10.73892 -10.64157 -10.58861 -9.82182 -9.47502 -8.34034 -6.38812 0.56390 1.16681 1.23181 1.32604 1.37713 1.50343 2.22294 2.32278 2.61255 2.66026 2.70750 3.09556 3.46916 3.67441 3.70178 3.84481 3.88529 4.06872 4.10591 4.12629 4.20865 4.22195 4.26080 4.35929 4.39623 4.47991 4.49684 4.52164 4.59720 4.72746 4.78155 4.80692 4.89737 4.94156 4.96494 5.14333 5.16756 5.22290 5.32629 5.34473 5.41749 5.50421 5.63399 5.77268 5.85210 5.92996 5.95449 6.20575 6.50011 6.65770 7.04744 7.26812 7.60551 8.80952 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.002389 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.504224 B =11719.347293 C =12389.840191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.036 3.964 3 O -0.399 6.399 4 C 0.239 3.761 5 C 0.145 3.855 6 N -0.353 5.353 7 C 0.143 3.857 8 C -0.306 4.306 9 C 0.583 3.417 10 O -0.593 6.593 11 N -0.699 5.699 12 C 0.247 3.753 13 H 0.028 0.972 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.030 3.970 17 N -0.933 5.933 18 Si 0.922 3.078 19 H -0.280 1.280 20 H -0.243 1.243 21 H -0.278 1.278 22 C -0.125 4.125 23 C -0.133 4.133 24 C 0.088 3.912 25 N -0.313 5.313 26 O -0.406 6.406 27 C 0.047 3.953 28 C -0.151 4.151 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.203 0.797 38 H 0.402 0.598 39 H 0.269 0.731 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.034 0.966 44 H 0.050 0.950 45 H 0.207 0.793 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.062 0.938 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.264 -6.854 4.816 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 O -0.320 6.320 4 C 0.142 3.858 5 C 0.024 3.976 6 N -0.132 5.132 7 C -0.009 4.009 8 C -0.321 4.321 9 C 0.371 3.629 10 O -0.476 6.476 11 N -0.347 5.347 12 C 0.143 3.857 13 H 0.046 0.954 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.170 4.170 17 N -0.572 5.572 18 Si 0.746 3.254 19 H -0.206 1.206 20 H -0.167 1.167 21 H -0.204 1.204 22 C -0.164 4.164 23 C -0.190 4.190 24 C -0.099 4.099 25 N -0.133 5.133 26 O -0.327 6.327 27 C -0.028 4.028 28 C -0.208 4.208 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.220 0.780 38 H 0.237 0.763 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.224 0.776 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.081 0.919 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -29.184 -6.763 4.735 30.329 hybrid contribution 1.332 0.255 -0.797 1.573 sum -27.851 -6.508 3.938 28.871 Atomic orbital electron populations 1.21763 0.92034 1.03636 1.03074 1.23095 0.97208 0.82292 1.01377 1.87940 1.21810 1.29117 1.93093 1.23302 0.81435 0.98386 0.82648 1.21733 0.72860 0.98787 1.04215 1.48282 1.06727 1.14116 1.44076 1.23152 0.90244 0.93903 0.93609 1.20285 0.93322 1.00338 1.18180 1.17593 0.82833 0.84581 0.77846 1.90699 1.86655 1.24180 1.46056 1.45998 1.04950 1.23547 1.60226 1.18832 0.83302 0.89916 0.93695 0.95441 1.21245 1.04705 1.07760 1.22524 0.92553 1.25584 0.94960 0.99541 0.96895 1.69992 1.12969 1.38172 1.36098 0.86133 0.77918 0.81757 0.79573 1.20579 1.16678 1.20386 1.22043 0.97679 0.96920 0.99785 1.21764 0.98442 0.98596 1.00229 1.24368 0.96299 0.93726 0.95522 1.77032 1.00389 1.13258 1.22652 1.88046 1.87247 1.32901 1.24544 1.22876 1.00667 0.84578 0.94705 1.21772 1.01044 1.03601 0.94354 0.92213 0.89034 0.91673 0.92106 0.91964 0.91509 0.84959 0.84935 0.77997 0.76313 0.92228 0.91957 0.93066 0.92598 0.94728 0.93109 0.77610 0.93136 0.91156 0.88863 0.91883 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 2 C 0.04 0.42 6.28 71.98 0.45 0.87 16 3 O -0.40 -6.55 10.20 -126.21 -1.29 -7.84 16 4 C 0.24 4.25 2.93 71.98 0.21 4.46 16 5 C 0.14 2.30 6.52 86.38 0.56 2.86 16 6 N -0.35 -7.92 3.60 -346.30 -1.25 -9.16 16 7 C 0.14 3.65 11.25 84.28 0.95 4.60 16 8 C -0.31 -9.41 6.13 -20.15 -0.12 -9.54 16 9 C 0.58 22.53 6.42 86.66 0.56 23.08 16 10 O -0.59 -26.32 14.03 -4.07 -0.06 -26.38 16 11 N -0.70 -28.11 5.02 -449.37 -2.26 -30.37 16 12 C 0.25 11.66 1.77 44.25 0.08 11.74 16 13 H 0.03 1.44 5.25 -2.39 -0.01 1.42 16 14 C -0.52 -28.45 9.06 25.60 0.23 -28.22 16 15 H 0.06 3.24 8.05 -2.91 -0.02 3.22 16 16 C 0.03 1.70 5.47 84.65 0.46 2.16 16 17 N -0.93 -56.19 13.96 21.45 0.30 -55.90 16 18 Si 0.92 44.69 26.33 68.60 1.81 46.50 16 19 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.24 -11.34 5.92 99.48 0.59 -10.75 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 C -0.13 -5.35 5.15 30.60 0.16 -5.20 16 23 C -0.13 -5.18 8.53 71.98 0.61 -4.56 16 24 C 0.09 2.36 11.50 85.65 0.99 3.34 16 25 N -0.31 -8.02 12.24 -56.27 -0.69 -8.71 16 26 O -0.41 -8.87 10.19 -126.21 -1.29 -10.15 16 27 C 0.05 0.82 5.85 71.98 0.42 1.24 16 28 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.66 4.78 -2.39 -0.01 0.65 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 1.24 7.55 -2.39 -0.02 1.23 16 35 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.13 1.67 8.06 -2.39 -0.02 1.65 16 37 H 0.20 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.40 14.28 7.54 -92.71 -0.70 13.58 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.05 2.26 6.80 -2.39 -0.02 2.24 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.03 1.43 7.89 -2.38 -0.02 1.42 16 44 H 0.05 1.98 5.63 -2.39 -0.01 1.96 16 45 H 0.21 4.52 7.50 -2.91 -0.02 4.50 16 46 H 0.05 0.85 8.00 -2.39 -0.02 0.83 16 47 H 0.07 0.98 5.56 -2.39 -0.01 0.96 16 48 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -72.43 403.50 2.45 -69.98 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.13 Total: 27.53 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 7.04 Total: 4.50 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -3.89 Total: -104.13 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -2.63 Total: -44.37 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.81 Total: 46.50 kcal Total: -72.43 2.45 -69.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567317838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.623 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds