Wall clock time and date at job start Wed Apr 1 2020 00:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47289 * 2 1 4 4 C 1.42900 * 113.99772 * 184.93851 * 3 2 1 5 5 H 1.09000 * 109.47335 * 325.56222 * 4 3 2 6 6 C 1.53003 * 109.47322 * 85.56999 * 4 3 2 7 7 C 1.53004 * 109.47185 * 58.24705 * 6 4 3 8 8 C 1.50701 * 109.46927 * 205.56563 * 4 3 2 9 9 O 1.21281 * 120.00095 * 350.34320 * 8 4 3 10 10 N 1.34770 * 119.99980 * 170.33761 * 8 4 3 11 11 C 1.47864 * 126.92785 * 354.83888 * 10 8 4 12 12 C 1.56021 * 105.11248 * 181.89885 * 11 10 8 13 13 H 1.08999 * 116.26293 * 158.85453 * 12 11 10 14 14 C 1.57081 * 99.60039 * 32.80649 * 12 11 10 15 15 C 1.49283 * 126.92543 * 174.52585 * 10 8 4 16 16 H 1.09003 * 116.12639 * 16.89388 * 15 10 8 17 17 C 1.56012 * 104.12869 * 246.92757 * 15 10 8 18 18 N 1.49715 * 104.08516 * 287.95557 * 12 11 10 19 19 C 1.46899 * 111.00041 * 306.12787 * 18 12 11 20 20 C 1.50699 * 109.46959 * 301.52890 * 19 18 12 21 21 O 1.21299 * 120.00371 * 0.02562 * 20 19 18 22 22 N 1.34780 * 120.00465 * 179.97438 * 20 19 18 23 23 C 1.37093 * 120.00383 * 179.97438 * 22 20 19 24 24 H 1.08003 * 119.99963 * 0.02562 * 23 22 20 25 25 C 1.38955 * 119.99996 * 179.97438 * 23 22 20 26 26 N 1.31407 * 119.99774 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00056 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47128 * 90.00187 * 27 25 23 29 29 H 1.48499 * 109.47024 * 210.00318 * 27 25 23 30 30 H 1.48504 * 109.47069 * 329.99906 * 27 25 23 31 31 H 1.08999 * 109.47864 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46740 * 299.99944 * 1 2 3 33 33 H 1.08998 * 109.47689 * 59.99682 * 1 2 3 34 34 H 1.09006 * 109.46740 * 240.00056 * 2 1 3 35 35 H 1.08999 * 109.47190 * 120.00492 * 2 1 3 36 36 H 1.08994 * 109.47185 * 178.25094 * 6 4 3 37 37 H 1.09008 * 109.46868 * 298.24713 * 6 4 3 38 38 H 1.09005 * 109.46774 * 305.10562 * 7 6 4 39 39 H 1.08995 * 109.46753 * 65.10478 * 7 6 4 40 40 H 1.08995 * 109.46933 * 185.10448 * 7 6 4 41 41 H 1.08995 * 110.31725 * 300.80675 * 11 10 8 42 42 H 1.09006 * 110.31123 * 62.89494 * 11 10 8 43 43 H 1.09000 * 112.35765 * 64.33651 * 14 12 11 44 44 H 1.08999 * 112.36139 * 191.65602 * 14 12 11 45 45 H 1.08997 * 110.32259 * 47.69251 * 17 15 10 46 46 H 1.08993 * 110.32374 * 169.79944 * 17 15 10 47 47 H 1.08997 * 109.47085 * 61.52665 * 19 18 12 48 48 H 1.09001 * 109.47098 * 181.53125 * 19 18 12 49 49 H 0.97007 * 119.99077 * 0.02562 * 22 20 19 50 50 H 0.96998 * 119.99925 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4263 1.4616 -0.1124 5 1 3.9002 0.6295 0.4084 6 6 3.8250 1.4327 -1.5893 7 6 3.1254 2.5748 -2.3289 8 6 3.8759 2.7613 0.5039 9 8 3.0559 3.5924 0.8322 10 7 5.1891 3.0000 0.6902 11 6 6.3058 2.0615 0.4479 12 6 7.5899 2.8385 0.8740 13 1 8.4639 2.2322 1.1119 14 6 6.9968 3.7033 2.0435 15 6 5.8101 4.2674 1.1768 16 1 5.1399 4.9723 1.6687 17 6 6.6098 4.7966 -0.0538 18 7 7.7703 3.8627 -0.2031 19 6 7.7946 3.2326 -1.5299 20 6 8.9135 2.2247 -1.5869 21 8 9.6208 2.0482 -0.6174 22 7 9.1277 1.5186 -2.7147 23 6 10.1459 0.6020 -2.7667 24 1 10.7762 0.4455 -1.9037 25 6 10.3664 -0.1263 -3.9294 26 7 9.5992 0.0638 -4.9791 27 14 11.7532 -1.3757 -4.0000 28 1 11.2481 -2.7013 -3.5611 29 1 12.2595 -1.4751 -5.3925 30 1 12.8547 -0.9438 -3.1025 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8932 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 4.9050 1.5511 -1.6764 37 1 3.5275 0.4799 -2.0273 38 1 2.0496 2.5078 -2.1662 39 1 3.4912 3.5297 -1.9518 40 1 3.3369 2.5003 -3.3955 41 1 6.1861 1.1656 1.0569 42 1 6.3550 1.7967 -0.6084 43 1 6.6511 3.0920 2.8771 44 1 7.6818 4.4862 2.3690 45 1 5.9893 4.7675 -0.9495 46 1 6.9599 5.8122 0.1305 47 1 6.8441 2.7310 -1.7113 48 1 7.9540 3.9958 -2.2916 49 1 8.5618 1.6595 -3.4899 50 1 9.7528 -0.4449 -5.7906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567852134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:31 Heat of formation + Delta-G solvation = -69.225503 kcal Electronic energy + Delta-G solvation = -31725.453878 eV Core-core repulsion = 27561.375344 eV Total energy + Delta-G solvation = -4164.078534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.31538 -39.44319 -38.07351 -37.42496 -34.30006 -33.99209 -33.38016 -31.44010 -31.12654 -30.85623 -29.70152 -27.25701 -26.52512 -25.03789 -24.18947 -23.36885 -22.29136 -21.09560 -20.53621 -19.38760 -18.74506 -17.90885 -17.36665 -16.99929 -16.46900 -16.12837 -16.04387 -15.50347 -15.42489 -14.69878 -14.58288 -14.11207 -14.07534 -13.91807 -13.61215 -13.34810 -13.18299 -12.91339 -12.75084 -12.55759 -12.48559 -12.31904 -12.07744 -11.95343 -11.80831 -11.62032 -11.49239 -11.43205 -11.40298 -11.25927 -11.21371 -11.06460 -10.98885 -10.82703 -10.44840 -10.29103 -10.00835 -9.57572 -9.53343 -8.73778 -8.44904 -8.07767 -7.98342 -6.49284 -3.90419 2.51279 2.54811 3.11825 3.21891 3.27110 3.60424 3.78571 3.86758 4.14734 4.26478 4.48807 4.51448 4.61285 4.65839 4.74102 4.84306 4.95722 4.99029 5.00331 5.07159 5.11067 5.18093 5.24613 5.33565 5.38822 5.44453 5.46049 5.61574 5.63564 5.70731 5.73443 5.76894 5.83866 5.86329 5.88244 5.88916 5.95987 6.01064 6.11839 6.18093 6.24550 6.36056 6.89495 6.90155 7.11324 7.44232 7.47972 7.97555 8.10063 8.52285 9.09824 9.45014 9.95768 10.68093 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.003546 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.006946 B = 7894.576274 C = 9566.767657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.078 3.922 5 H 0.081 0.919 6 C -0.144 4.144 7 C -0.146 4.146 8 C 0.540 3.460 9 O -0.525 6.525 10 N -0.620 5.620 11 C 0.050 3.950 12 C 0.071 3.929 13 H 0.156 0.844 14 C -0.137 4.137 15 C 0.112 3.888 16 H 0.126 0.874 17 C 0.024 3.976 18 N -0.491 5.491 19 C 0.030 3.970 20 C 0.442 3.558 21 O -0.580 6.580 22 N -0.560 5.560 23 C -0.300 4.300 24 H 0.104 0.896 25 C 0.024 3.976 26 N -0.900 5.900 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.269 1.269 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.053 0.947 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.381 2.300 7.963 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.274 6.274 4 C 0.016 3.984 5 H 0.098 0.902 6 C -0.182 4.182 7 C -0.203 4.203 8 C 0.328 3.672 9 O -0.400 6.400 10 N -0.357 5.357 11 C -0.073 4.073 12 C -0.037 4.037 13 H 0.173 0.827 14 C -0.176 4.176 15 C 0.009 3.991 16 H 0.144 0.856 17 C -0.104 4.104 18 N -0.214 5.214 19 C -0.101 4.101 20 C 0.228 3.772 21 O -0.465 6.465 22 N -0.196 5.196 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.178 4.178 26 N -0.541 5.541 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.086 2.945 8.602 15.934 hybrid contribution -0.260 -1.411 -1.014 1.757 sum -13.346 1.534 7.588 15.429 Atomic orbital electron populations 1.21715 0.93423 1.02172 1.03303 1.22586 0.95876 0.83678 1.00243 1.88025 1.18715 1.26204 1.94442 1.21858 0.83770 0.96005 0.96727 0.90159 1.22030 1.01678 1.01026 0.93467 1.21651 1.01484 0.97446 0.99736 1.19868 0.80722 0.88438 0.78209 1.90696 1.51446 1.47533 1.50318 1.49268 1.04701 1.15669 1.66020 1.23566 0.87633 0.93624 1.02518 1.24907 0.95433 0.92626 0.90714 0.82661 1.24052 0.96447 1.00246 0.96838 1.24110 0.93144 0.86819 0.95030 0.85625 1.23977 0.91188 0.98004 0.97277 1.65142 1.38769 1.15413 1.02115 1.22216 0.97900 0.97915 0.92106 1.19623 0.87816 0.84955 0.84824 1.90463 1.50336 1.69713 1.35984 1.41864 1.30306 1.34985 1.12495 1.19690 1.08818 1.14498 0.99936 0.87822 1.25264 0.98712 0.98848 0.94983 1.69605 1.39044 1.42006 1.03401 0.85870 0.80791 0.80216 0.77509 1.20417 1.20910 1.19354 0.91049 0.91780 0.91749 0.93015 0.93331 0.90341 0.90452 0.91610 0.93014 0.92300 0.90983 0.89695 0.90012 0.88565 0.92175 0.89096 0.92986 0.89152 0.77512 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.52 6.45 37.16 0.24 0.76 16 3 O -0.36 -4.73 8.72 -54.95 -0.48 -5.21 16 4 C 0.08 0.99 2.24 -27.88 -0.06 0.92 16 5 H 0.08 0.90 7.76 -51.93 -0.40 0.50 16 6 C -0.14 -1.71 5.72 -26.73 -0.15 -1.87 16 7 C -0.15 -1.79 9.51 37.16 0.35 -1.44 16 8 C 0.54 7.97 6.12 -10.99 -0.07 7.90 16 9 O -0.52 -9.47 16.87 -14.17 -0.24 -9.71 16 10 N -0.62 -8.21 2.95 -156.59 -0.46 -8.67 16 11 C 0.05 0.67 5.25 -1.68 -0.01 0.66 16 12 C 0.07 1.03 4.13 -62.31 -0.26 0.77 16 13 H 0.16 2.64 6.35 -51.93 -0.33 2.31 16 14 C -0.14 -1.59 6.84 -22.12 -0.15 -1.74 16 15 C 0.11 1.36 5.25 -62.38 -0.33 1.03 16 16 H 0.13 1.47 8.04 -51.93 -0.42 1.05 16 17 C 0.02 0.31 6.34 -0.64 0.00 0.30 16 18 N -0.49 -7.53 5.21 -216.94 -1.13 -8.66 16 19 C 0.03 0.50 4.74 -4.98 -0.02 0.48 16 20 C 0.44 9.57 7.44 -10.98 -0.08 9.48 16 21 O -0.58 -14.14 13.57 5.54 0.08 -14.07 16 22 N -0.56 -13.27 5.29 -10.96 -0.06 -13.33 16 23 C -0.30 -7.89 9.68 -14.93 -0.14 -8.04 16 24 H 0.10 2.86 7.16 -52.48 -0.38 2.48 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 26 N -0.90 -23.48 13.05 55.50 0.72 -22.75 16 27 Si 0.93 20.21 29.55 -169.99 -5.02 15.18 16 28 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 30 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.45 7.47 -51.93 -0.39 0.07 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.97 5.53 -51.93 -0.29 0.69 16 37 H 0.08 0.82 7.53 -51.92 -0.39 0.43 16 38 H 0.06 0.84 7.48 -51.93 -0.39 0.45 16 39 H 0.05 0.70 7.45 -51.93 -0.39 0.31 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.22 3.28 -51.93 -0.17 1.05 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.81 5.35 -51.93 -0.28 0.53 16 48 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 49 H 0.39 8.98 7.90 -40.82 -0.32 8.66 16 50 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -31.15 390.71 -9.00 -40.15 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -7.90 Total: 12.29 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.40 Total: 8.89 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.93 Total: -53.41 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.64 Total: -28.99 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.15 -9.00 -40.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567852134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.074 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds