Wall clock time and date at job start Wed Apr 1 2020 00:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46886 * 2 1 4 4 C 1.42902 * 113.99638 * 178.85426 * 3 2 1 5 5 H 1.08995 * 109.47361 * 19.05321 * 4 3 2 6 6 C 1.52996 * 109.47355 * 259.04643 * 4 3 2 7 7 C 1.53005 * 109.46919 * 65.67641 * 6 4 3 8 8 C 1.50702 * 109.46663 * 139.05052 * 4 3 2 9 9 O 1.21284 * 120.00318 * 9.95484 * 8 4 3 10 10 N 1.34773 * 119.99990 * 189.95259 * 8 4 3 11 11 C 1.47867 * 126.92445 * 4.80453 * 10 8 4 12 12 C 1.56001 * 105.12095 * 181.83987 * 11 10 8 13 13 H 1.09002 * 116.18438 * 159.04671 * 12 11 10 14 14 C 1.57085 * 99.48044 * 33.13951 * 12 11 10 15 15 C 1.49283 * 126.93203 * 185.12405 * 10 8 4 16 16 H 1.09000 * 116.12314 * 16.82423 * 15 10 8 17 17 C 1.56012 * 104.12644 * 247.72590 * 15 10 8 18 18 N 1.49696 * 105.07430 * 288.93524 * 12 11 10 19 19 C 1.46905 * 111.00066 * 306.25299 * 18 12 11 20 20 C 1.50705 * 109.46911 * 300.73575 * 19 18 12 21 21 O 1.21287 * 119.99851 * 359.97438 * 20 19 18 22 22 N 1.34771 * 119.99974 * 179.97438 * 20 19 18 23 23 C 1.37098 * 119.99986 * 179.97438 * 22 20 19 24 24 H 1.07998 * 120.00137 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99978 * 180.02562 * 23 22 20 26 26 N 1.31416 * 119.99994 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00064 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46802 * 59.99728 * 27 25 23 29 29 H 1.48498 * 109.46896 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47038 * 299.99874 * 27 25 23 31 31 H 1.09007 * 109.46901 * 60.00264 * 1 2 3 32 32 H 1.08992 * 109.47482 * 300.00201 * 1 2 3 33 33 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46800 * 119.99799 * 2 1 3 35 35 H 1.08995 * 109.47139 * 240.00181 * 2 1 3 36 36 H 1.09001 * 109.47607 * 185.67617 * 6 4 3 37 37 H 1.09002 * 109.47204 * 305.68026 * 6 4 3 38 38 H 1.09002 * 109.47140 * 178.01821 * 7 6 4 39 39 H 1.08996 * 109.47284 * 298.02259 * 7 6 4 40 40 H 1.09002 * 109.46819 * 58.01957 * 7 6 4 41 41 H 1.09001 * 110.31673 * 300.86706 * 11 10 8 42 42 H 1.08997 * 110.31255 * 63.04957 * 11 10 8 43 43 H 1.08991 * 112.35960 * 191.56073 * 14 12 11 44 44 H 1.09006 * 112.43710 * 64.16271 * 14 12 11 45 45 H 1.09001 * 110.32598 * 47.69170 * 17 15 10 46 46 H 1.09000 * 110.32435 * 169.90037 * 17 15 10 47 47 H 1.08998 * 109.46858 * 60.73558 * 19 18 12 48 48 H 1.08997 * 109.47309 * 180.73739 * 19 18 12 49 49 H 0.96998 * 119.99870 * 0.02562 * 22 20 19 50 50 H 0.97004 * 120.00018 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4306 1.4602 0.0261 5 1 3.8757 0.5184 -0.2947 6 6 3.8907 1.7831 1.4491 7 6 3.5761 0.6005 2.3675 8 6 3.8641 2.5634 -0.9045 9 8 3.0382 3.3080 -1.3887 10 7 5.1697 2.7228 -1.1987 11 6 6.2878 1.8513 -0.7783 12 6 7.5699 2.5274 -1.3552 13 1 8.5121 2.2572 -0.8786 14 6 7.1375 4.0339 -1.2501 15 6 5.7793 3.8183 -2.0091 16 1 5.1617 4.7034 -2.1613 17 6 6.2856 3.1013 -3.2989 18 7 7.4924 2.3105 -2.8344 19 6 7.3154 0.8865 -3.1491 20 6 8.4740 0.1009 -2.5906 21 8 9.3600 0.6713 -1.9900 22 7 8.5254 -1.2353 -2.7586 23 6 9.5796 -1.9499 -2.2510 24 1 10.3691 -1.4420 -1.7169 25 6 9.6330 -3.3275 -2.4246 26 7 8.6732 -3.9453 -3.0758 27 14 11.0690 -4.3012 -1.7324 28 1 11.1237 -4.1228 -0.2591 29 1 10.8898 -5.7407 -2.0500 30 1 12.3348 -3.8141 -2.3373 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 4.9648 1.9686 1.4505 37 1 3.3684 2.6703 1.8073 38 1 3.9355 0.8162 3.3737 39 1 2.4988 0.4373 2.3936 40 1 4.0701 -0.2945 1.9893 41 1 6.3408 1.8018 0.3093 42 1 6.1675 0.8526 -1.1979 43 1 7.8130 4.6978 -1.7895 44 1 6.9897 4.3533 -0.2184 45 1 5.5076 2.4530 -3.7018 46 1 6.5918 3.8351 -4.0445 47 1 6.3864 0.5290 -2.7051 48 1 7.2753 0.7556 -4.2304 49 1 7.8170 -1.6913 -3.2392 50 1 8.7102 -4.9071 -3.1966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567852135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:35 Heat of formation + Delta-G solvation = -70.434942 kcal Electronic energy + Delta-G solvation = -31438.928110 eV Core-core repulsion = 27274.797130 eV Total energy + Delta-G solvation = -4164.130979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.23931 -39.42415 -38.07731 -37.44546 -34.35199 -33.99460 -33.28775 -31.44195 -31.25389 -30.90806 -29.71294 -27.42543 -26.50752 -24.99889 -24.11404 -23.00530 -22.35515 -21.30592 -20.59048 -19.35974 -18.80491 -17.91035 -17.57709 -17.00916 -16.32555 -16.26578 -16.10977 -15.56764 -15.09633 -14.68697 -14.49528 -14.34999 -13.97055 -13.90249 -13.81186 -13.31380 -13.13869 -12.81936 -12.64102 -12.58815 -12.48639 -12.42206 -12.12715 -12.05917 -11.82235 -11.62517 -11.57564 -11.43237 -11.39966 -11.37683 -11.28218 -11.04332 -10.96019 -10.87690 -10.49845 -10.28421 -10.11480 -9.55920 -9.43575 -8.75747 -8.45632 -8.09125 -8.00697 -6.48916 -3.90223 2.50776 2.54736 3.14264 3.21313 3.24874 3.58823 3.78981 3.86145 4.14388 4.25875 4.48024 4.50913 4.60539 4.66463 4.69383 4.85936 4.92753 4.98609 5.00163 5.02498 5.15440 5.16028 5.23193 5.27944 5.35228 5.42360 5.44596 5.49245 5.61013 5.69795 5.72320 5.74527 5.79459 5.79782 5.84497 5.86187 5.92970 5.97952 6.02584 6.10551 6.18324 6.33882 6.85405 6.90847 7.07000 7.43289 7.47924 7.97593 8.08809 8.52649 9.09949 9.45445 9.96259 10.68425 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.003529 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.358138 B = 7933.064080 C = 9591.966904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.356 6.356 4 C 0.078 3.922 5 H 0.085 0.915 6 C -0.136 4.136 7 C -0.154 4.154 8 C 0.530 3.470 9 O -0.525 6.525 10 N -0.620 5.620 11 C 0.053 3.947 12 C 0.070 3.930 13 H 0.156 0.844 14 C -0.137 4.137 15 C 0.112 3.888 16 H 0.123 0.877 17 C 0.018 3.982 18 N -0.482 5.482 19 C 0.026 3.974 20 C 0.442 3.558 21 O -0.581 6.581 22 N -0.561 5.561 23 C -0.301 4.301 24 H 0.104 0.896 25 C 0.024 3.976 26 N -0.900 5.900 27 Si 0.930 3.070 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.544 9.052 6.402 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.274 6.274 4 C 0.017 3.983 5 H 0.103 0.897 6 C -0.174 4.174 7 C -0.211 4.211 8 C 0.318 3.682 9 O -0.401 6.401 10 N -0.357 5.357 11 C -0.071 4.071 12 C -0.039 4.039 13 H 0.173 0.827 14 C -0.175 4.175 15 C 0.009 3.991 16 H 0.141 0.859 17 C -0.110 4.110 18 N -0.206 5.206 19 C -0.106 4.106 20 C 0.228 3.772 21 O -0.465 6.465 22 N -0.197 5.197 23 C -0.430 4.430 24 H 0.121 0.879 25 C -0.178 4.178 26 N -0.541 5.541 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.198 1.198 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.109 0.891 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.181 9.895 6.232 16.179 hybrid contribution -0.384 -1.662 0.283 1.729 sum -11.565 8.233 6.515 15.620 Atomic orbital electron populations 1.21719 0.93443 1.02233 1.03244 1.22754 0.95940 0.83589 1.00544 1.88013 1.18232 1.26394 1.94807 1.21910 0.83692 0.97672 0.95033 0.89736 1.21947 1.02010 1.00347 0.93132 1.21848 1.02086 0.97689 0.99518 1.20227 0.80739 0.85832 0.81430 1.90697 1.50684 1.46071 1.52620 1.49327 1.05402 1.28111 1.52830 1.23504 0.87595 0.95209 1.00747 1.24887 0.97046 0.93347 0.88585 0.82706 1.24003 0.95446 0.97346 1.00733 1.24026 0.93298 0.90578 0.91224 0.85885 1.24363 0.92010 0.97996 0.96643 1.66149 1.35023 1.07129 1.12279 1.22247 0.97434 0.89156 1.01785 1.19639 0.88662 0.82898 0.86006 1.90463 1.40588 1.69289 1.46192 1.41863 1.23017 1.05176 1.49627 1.19648 1.01500 0.89308 1.32584 0.87868 1.25265 0.98431 0.96930 0.97142 1.69604 1.32857 1.10532 1.41146 0.85929 0.80953 0.78079 0.79342 1.19886 1.20970 1.19830 0.91726 0.91853 0.90985 0.92614 0.93210 0.90174 0.90503 0.91932 0.92026 0.92346 0.90566 0.90101 0.88526 0.90033 0.91752 0.89111 0.93023 0.89138 0.77525 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.50 6.03 37.16 0.22 0.73 16 3 O -0.36 -4.81 9.32 -54.94 -0.51 -5.32 16 4 C 0.08 0.98 2.10 -27.88 -0.06 0.93 16 5 H 0.08 1.00 7.56 -51.93 -0.39 0.60 16 6 C -0.14 -1.43 5.56 -26.73 -0.15 -1.58 16 7 C -0.15 -1.38 8.96 37.16 0.33 -1.05 16 8 C 0.53 7.86 7.21 -10.99 -0.08 7.78 16 9 O -0.53 -9.62 16.90 -14.16 -0.24 -9.86 16 10 N -0.62 -8.18 2.94 -156.81 -0.46 -8.64 16 11 C 0.05 0.70 5.32 -1.69 -0.01 0.69 16 12 C 0.07 1.00 4.12 -62.33 -0.26 0.74 16 13 H 0.16 2.60 6.43 -51.93 -0.33 2.26 16 14 C -0.14 -1.56 6.81 -22.31 -0.15 -1.71 16 15 C 0.11 1.36 5.16 -62.57 -0.32 1.04 16 16 H 0.12 1.44 8.08 -51.93 -0.42 1.02 16 17 C 0.02 0.23 6.37 0.44 0.00 0.24 16 18 N -0.48 -7.48 5.29 -215.27 -1.14 -8.61 16 19 C 0.03 0.43 4.70 -4.97 -0.02 0.41 16 20 C 0.44 9.66 7.48 -10.99 -0.08 9.58 16 21 O -0.58 -14.23 13.65 5.55 0.08 -14.15 16 22 N -0.56 -13.41 5.29 -10.96 -0.06 -13.46 16 23 C -0.30 -7.97 9.68 -14.93 -0.14 -8.11 16 24 H 0.10 2.85 7.16 -52.49 -0.38 2.48 16 25 C 0.02 0.62 5.50 -17.46 -0.10 0.53 16 26 N -0.90 -23.63 13.05 55.50 0.72 -22.90 16 27 Si 0.93 20.26 29.55 -169.99 -5.02 15.24 16 28 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 30 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.50 5.91 -51.93 -0.31 0.19 16 35 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 36 H 0.08 0.80 5.76 -51.93 -0.30 0.50 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.55 6.36 -51.93 -0.33 0.21 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.89 6.06 -51.93 -0.31 0.58 16 42 H 0.08 1.18 5.33 -51.93 -0.28 0.90 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.87 7.72 -51.93 -0.40 0.47 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.82 5.69 -51.93 -0.30 0.53 16 48 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 50 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -31.51 390.42 -9.03 -40.55 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -7.85 Total: 12.02 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -0.43 Total: 9.27 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.93 Total: -53.62 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.68 Total: -29.34 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.51 -9.03 -40.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567852135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.889 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds