Wall clock time and date at job start Wed Apr 1 2020 00:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46886 * 2 1 4 4 C 1.42902 * 113.99638 * 178.85426 * 3 2 1 5 5 H 1.08995 * 109.47361 * 19.05321 * 4 3 2 6 6 C 1.52996 * 109.47355 * 259.04643 * 4 3 2 7 7 C 1.53005 * 109.46919 * 65.67641 * 6 4 3 8 8 C 1.50702 * 109.46663 * 139.05052 * 4 3 2 9 9 O 1.21284 * 120.00318 * 9.95484 * 8 4 3 10 10 N 1.34773 * 119.99990 * 189.95259 * 8 4 3 11 11 C 1.47867 * 126.92445 * 4.80453 * 10 8 4 12 12 C 1.56001 * 105.12095 * 181.83987 * 11 10 8 13 13 H 1.09002 * 116.18438 * 159.04671 * 12 11 10 14 14 C 1.57085 * 99.48044 * 33.13951 * 12 11 10 15 15 C 1.49283 * 126.93203 * 185.12405 * 10 8 4 16 16 H 1.09000 * 116.12314 * 16.82423 * 15 10 8 17 17 C 1.56012 * 104.12644 * 247.72590 * 15 10 8 18 18 N 1.49696 * 105.07430 * 288.93524 * 12 11 10 19 19 C 1.46905 * 111.00066 * 306.25299 * 18 12 11 20 20 C 1.50705 * 109.46911 * 300.73575 * 19 18 12 21 21 O 1.21287 * 119.99851 * 359.97438 * 20 19 18 22 22 N 1.34771 * 119.99974 * 179.97438 * 20 19 18 23 23 C 1.37098 * 119.99986 * 179.97438 * 22 20 19 24 24 H 1.07998 * 120.00137 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99978 * 180.02562 * 23 22 20 26 26 N 1.31416 * 119.99994 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00064 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46802 * 59.99728 * 27 25 23 29 29 H 1.48498 * 109.46896 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47038 * 299.99874 * 27 25 23 31 31 H 1.09007 * 109.46901 * 60.00264 * 1 2 3 32 32 H 1.08992 * 109.47482 * 300.00201 * 1 2 3 33 33 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46800 * 119.99799 * 2 1 3 35 35 H 1.08995 * 109.47139 * 240.00181 * 2 1 3 36 36 H 1.09001 * 109.47607 * 185.67617 * 6 4 3 37 37 H 1.09002 * 109.47204 * 305.68026 * 6 4 3 38 38 H 1.09002 * 109.47140 * 178.01821 * 7 6 4 39 39 H 1.08996 * 109.47284 * 298.02259 * 7 6 4 40 40 H 1.09002 * 109.46819 * 58.01957 * 7 6 4 41 41 H 1.09001 * 110.31673 * 300.86706 * 11 10 8 42 42 H 1.08997 * 110.31255 * 63.04957 * 11 10 8 43 43 H 1.08991 * 112.35960 * 191.56073 * 14 12 11 44 44 H 1.09006 * 112.43710 * 64.16271 * 14 12 11 45 45 H 1.09001 * 110.32598 * 47.69170 * 17 15 10 46 46 H 1.09000 * 110.32435 * 169.90037 * 17 15 10 47 47 H 1.08998 * 109.46858 * 60.73558 * 19 18 12 48 48 H 1.08997 * 109.47309 * 180.73739 * 19 18 12 49 49 H 0.96998 * 119.99870 * 0.02562 * 22 20 19 50 50 H 0.97004 * 120.00018 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4306 1.4602 0.0261 5 1 3.8757 0.5184 -0.2947 6 6 3.8907 1.7831 1.4491 7 6 3.5761 0.6005 2.3675 8 6 3.8641 2.5634 -0.9045 9 8 3.0382 3.3080 -1.3887 10 7 5.1697 2.7228 -1.1987 11 6 6.2878 1.8513 -0.7783 12 6 7.5699 2.5274 -1.3552 13 1 8.5121 2.2572 -0.8786 14 6 7.1375 4.0339 -1.2501 15 6 5.7793 3.8183 -2.0091 16 1 5.1617 4.7034 -2.1613 17 6 6.2856 3.1013 -3.2989 18 7 7.4924 2.3105 -2.8344 19 6 7.3154 0.8865 -3.1491 20 6 8.4740 0.1009 -2.5906 21 8 9.3600 0.6713 -1.9900 22 7 8.5254 -1.2353 -2.7586 23 6 9.5796 -1.9499 -2.2510 24 1 10.3691 -1.4420 -1.7169 25 6 9.6330 -3.3275 -2.4246 26 7 8.6732 -3.9453 -3.0758 27 14 11.0690 -4.3012 -1.7324 28 1 11.1237 -4.1228 -0.2591 29 1 10.8898 -5.7407 -2.0500 30 1 12.3348 -3.8141 -2.3373 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 4.9648 1.9686 1.4505 37 1 3.3684 2.6703 1.8073 38 1 3.9355 0.8162 3.3737 39 1 2.4988 0.4373 2.3936 40 1 4.0701 -0.2945 1.9893 41 1 6.3408 1.8018 0.3093 42 1 6.1675 0.8526 -1.1979 43 1 7.8130 4.6978 -1.7895 44 1 6.9897 4.3533 -0.2184 45 1 5.5076 2.4530 -3.7018 46 1 6.5918 3.8351 -4.0445 47 1 6.3864 0.5290 -2.7051 48 1 7.2753 0.7556 -4.2304 49 1 7.8170 -1.6913 -3.2392 50 1 8.7102 -4.9071 -3.1966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567852135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:34 Heat of formation + Delta-G solvation = -92.043356 kcal Electronic energy + Delta-G solvation = -31439.865121 eV Core-core repulsion = 27274.797130 eV Total energy + Delta-G solvation = -4165.067991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.37151 -40.57592 -39.67280 -38.60739 -36.01528 -35.25238 -34.38258 -33.27485 -32.16083 -32.02852 -30.80518 -28.48883 -27.90330 -26.26245 -25.64647 -23.81477 -23.24114 -22.29801 -21.84107 -20.96135 -20.06624 -19.67027 -18.63531 -18.03245 -17.77157 -17.45540 -17.03850 -16.91080 -16.43868 -16.26917 -15.85627 -15.57437 -15.20380 -15.12429 -14.99603 -14.56189 -14.23380 -14.09427 -13.83440 -13.53040 -13.43677 -13.35431 -13.27747 -13.21398 -13.01528 -12.97081 -12.82883 -12.61383 -12.49883 -12.41090 -12.39138 -12.31056 -12.20069 -12.11384 -12.01052 -11.77013 -11.44170 -11.14647 -10.43958 -10.21195 -9.98786 -9.88348 -9.28715 -8.44316 -5.92608 1.37769 1.41132 1.44227 1.51083 1.54149 2.05311 2.29047 2.65996 2.68867 3.21377 3.24415 3.25622 3.42993 3.52373 3.71635 3.72384 3.78823 3.94374 4.01510 4.08448 4.11026 4.23775 4.31441 4.35544 4.39130 4.40079 4.44687 4.51711 4.56493 4.67769 4.72883 4.73462 4.77975 4.90041 4.96340 4.96737 5.00274 5.04370 5.12420 5.14080 5.22297 5.27952 5.43633 5.68757 5.78085 6.01914 6.05293 6.33227 6.61300 6.95844 7.14737 7.57477 8.11852 8.72714 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.003529 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.358138 B = 7933.064080 C = 9591.966904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.379 6.379 4 C 0.079 3.921 5 H 0.090 0.910 6 C -0.131 4.131 7 C -0.151 4.151 8 C 0.527 3.473 9 O -0.565 6.565 10 N -0.613 5.613 11 C 0.061 3.939 12 C 0.059 3.941 13 H 0.130 0.870 14 C -0.118 4.118 15 C 0.111 3.889 16 H 0.133 0.867 17 C 0.024 3.976 18 N -0.497 5.497 19 C 0.038 3.962 20 C 0.447 3.553 21 O -0.607 6.607 22 N -0.573 5.573 23 C -0.329 4.329 24 H 0.084 0.916 25 C -0.011 4.011 26 N -0.922 5.922 27 Si 0.989 3.011 28 H -0.269 1.269 29 H -0.275 1.275 30 H -0.273 1.273 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.110 0.890 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.393 0.607 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.799 9.165 7.142 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 O -0.298 6.298 4 C 0.017 3.983 5 H 0.108 0.892 6 C -0.169 4.169 7 C -0.208 4.208 8 C 0.316 3.684 9 O -0.444 6.444 10 N -0.349 5.349 11 C -0.062 4.062 12 C -0.049 4.049 13 H 0.148 0.852 14 C -0.156 4.156 15 C 0.009 3.991 16 H 0.151 0.849 17 C -0.104 4.104 18 N -0.221 5.221 19 C -0.093 4.093 20 C 0.234 3.766 21 O -0.493 6.493 22 N -0.210 5.210 23 C -0.458 4.458 24 H 0.102 0.898 25 C -0.211 4.211 26 N -0.563 5.563 27 Si 0.813 3.187 28 H -0.194 1.194 29 H -0.199 1.199 30 H -0.199 1.199 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.119 0.881 49 H 0.227 0.773 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.431 10.012 6.970 16.718 hybrid contribution -0.303 -1.630 0.033 1.658 sum -11.734 8.382 7.002 16.030 Atomic orbital electron populations 1.21743 0.92358 1.03527 1.02756 1.22968 0.96905 0.82480 1.01153 1.87992 1.18637 1.28219 1.94941 1.21991 0.83636 0.96990 0.95654 0.89181 1.21917 1.02094 1.00787 0.92063 1.21831 1.02242 0.96973 0.99758 1.20672 0.80680 0.85852 0.81201 1.90673 1.51681 1.47732 1.54298 1.49337 1.05046 1.28170 1.52370 1.23386 0.86991 0.94236 1.01626 1.24743 0.96386 0.95837 0.87917 0.85218 1.23945 0.94673 0.95241 1.01786 1.24159 0.93649 0.90539 0.90801 0.84893 1.24384 0.90858 0.97848 0.97330 1.66157 1.36675 1.06045 1.13237 1.22091 0.95458 0.89716 1.02081 1.20441 0.89248 0.82399 0.84491 1.90451 1.42063 1.69758 1.47022 1.41923 1.22793 1.05939 1.50312 1.19633 1.02216 0.90147 1.33817 0.89848 1.25990 1.00678 0.97311 0.97131 1.69673 1.34034 1.10888 1.41675 0.85035 0.77882 0.76985 0.78759 1.19418 1.19939 1.19859 0.92881 0.91645 0.88795 0.91046 0.93495 0.89639 0.91124 0.90672 0.91932 0.92198 0.88895 0.91526 0.87455 0.88434 0.92323 0.87221 0.91733 0.88062 0.77318 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 10.28 71.98 0.74 -1.69 16 2 C 0.04 0.81 6.03 71.98 0.43 1.25 16 3 O -0.38 -10.04 9.32 -130.13 -1.21 -11.25 16 4 C 0.08 1.91 2.10 29.85 0.06 1.97 16 5 H 0.09 2.04 7.56 -2.39 -0.02 2.03 16 6 C -0.13 -2.56 5.56 30.59 0.17 -2.39 16 7 C -0.15 -2.43 8.96 71.98 0.64 -1.78 16 8 C 0.53 15.23 7.21 87.66 0.63 15.86 16 9 O -0.57 -20.57 16.90 15.80 0.27 -20.30 16 10 N -0.61 -15.39 2.94 -768.42 -2.26 -17.65 16 11 C 0.06 1.54 5.32 87.16 0.46 2.00 16 12 C 0.06 1.65 4.12 46.84 0.19 1.84 16 13 H 0.13 4.36 6.43 -2.39 -0.02 4.35 16 14 C -0.12 -2.43 6.81 33.46 0.23 -2.21 16 15 C 0.11 2.49 5.16 46.93 0.24 2.73 16 16 H 0.13 2.81 8.08 -2.39 -0.02 2.80 16 17 C 0.02 0.56 6.37 86.42 0.55 1.11 16 18 N -0.50 -14.85 5.29 -834.98 -4.41 -19.27 16 19 C 0.04 1.27 4.70 85.56 0.40 1.67 16 20 C 0.45 19.68 7.48 87.66 0.66 20.34 16 21 O -0.61 -30.20 13.65 -3.05 -0.04 -30.24 16 22 N -0.57 -27.78 5.29 -306.99 -1.62 -29.40 16 23 C -0.33 -17.68 9.68 84.04 0.81 -16.86 16 24 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 25 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 26 N -0.92 -48.24 13.05 21.66 0.28 -47.96 16 27 Si 0.99 41.27 29.55 68.60 2.03 43.29 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 29 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 30 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 31 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.17 5.91 -2.39 -0.01 1.16 16 35 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 36 H 0.09 1.55 5.76 -2.39 -0.01 1.54 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.00 6.36 -2.39 -0.02 0.98 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 2.04 6.06 -2.39 -0.01 2.02 16 42 H 0.07 1.90 5.33 -2.39 -0.01 1.88 16 43 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.10 1.73 8.14 -2.38 -0.02 1.72 16 45 H 0.06 1.49 7.72 -2.39 -0.02 1.47 16 46 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.07 2.01 5.69 -2.39 -0.01 2.00 16 48 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 49 H 0.39 18.49 7.90 -92.71 -0.73 17.76 16 50 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -68.02 390.42 -0.04 -68.06 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: 0.23 Total: 40.99 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 6.70 Total: 23.73 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -8.01 Total: -114.28 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: -0.99 Total: -61.80 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -68.02 -0.04 -68.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567852135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.982 kcal (2) G-P(sol) polarization free energy of solvation -68.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds