Wall clock time and date at job start Tue Mar 31 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 C 1.53011 * 109.46807 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46939 * 180.02562 * 11 10 8 13 13 N 1.46498 * 109.47151 * 180.02562 * 12 11 10 14 14 C 1.33886 * 122.75902 * 269.70910 * 13 12 11 15 15 O 1.21225 * 125.39821 * 359.97438 * 14 13 12 16 16 C 1.51309 * 109.20458 * 179.84105 * 14 13 12 17 17 C 1.54236 * 103.55722 * 0.38493 * 16 14 13 18 18 C 1.33877 * 122.76724 * 89.99746 * 13 12 11 19 19 O 1.21226 * 125.39346 * 359.97438 * 18 13 12 20 20 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 35 35 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 36 36 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 37 37 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 38 38 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 39 39 H 1.09000 * 109.47726 * 299.99386 * 10 8 7 40 40 H 1.08998 * 109.47231 * 60.00064 * 10 8 7 41 41 H 1.09000 * 109.46826 * 299.99728 * 11 10 8 42 42 H 1.08998 * 109.47027 * 60.00117 * 11 10 8 43 43 H 1.09009 * 109.47036 * 299.99777 * 12 11 10 44 44 H 1.09000 * 109.47391 * 59.99604 * 12 11 10 45 45 H 1.09005 * 110.79952 * 241.77918 * 16 14 13 46 46 H 1.09004 * 110.55154 * 118.87537 * 16 14 13 47 47 H 1.08999 * 110.60586 * 241.26380 * 17 16 14 48 48 H 1.08993 * 110.60303 * 118.29524 * 17 16 14 49 49 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 50 50 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0449 -4.7517 1.8268 10 6 2.4073 -4.9302 3.7455 11 6 1.8972 -6.3728 3.7455 12 6 2.5072 -7.1294 4.9271 13 7 2.0193 -8.5108 4.9268 14 6 0.9113 -8.8879 5.5769 15 8 0.1956 -8.1569 6.2273 16 6 0.6923 -10.3705 5.3686 17 6 1.8838 -10.7912 4.4841 18 6 2.6477 -9.5010 4.2811 19 8 3.6669 -9.3826 3.6356 20 7 3.5050 -0.7218 1.2488 21 6 4.1901 0.3528 1.7498 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3498 1.7547 24 7 6.2359 -0.6835 1.2730 25 14 6.5130 1.8124 2.4451 26 1 5.5483 2.8366 2.9205 27 1 7.3617 1.3669 3.5792 28 1 7.3717 2.3968 1.3839 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 0.4436 -2.1651 1.3387 37 1 1.8183 -2.6512 0.3177 38 1 2.7232 -2.4351 2.9844 39 1 3.4936 -4.9287 3.6558 40 1 2.1190 -4.4433 4.6770 41 1 0.8110 -6.3740 3.8355 42 1 2.1852 -6.8600 2.8139 43 1 3.5936 -7.1282 4.8376 44 1 2.2189 -6.6420 5.8585 45 1 -0.2510 -10.5538 4.8540 46 1 0.7168 -10.8986 6.3218 47 1 1.5332 -11.1837 3.5296 48 1 2.5024 -11.5265 4.9985 49 1 3.9897 -1.4834 0.8938 50 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568453440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:37 Heat of formation + Delta-G solvation = -111.248222 kcal Electronic energy + Delta-G solvation = -29457.379284 eV Core-core repulsion = 25291.478508 eV Total energy + Delta-G solvation = -4165.900776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17850 -39.44655 -38.86921 -37.30116 -36.24904 -35.07909 -33.80467 -33.13475 -32.30118 -30.41268 -28.50043 -26.95147 -26.56852 -26.04122 -23.86240 -22.72389 -22.67887 -21.54170 -20.07988 -19.78576 -19.19982 -17.74062 -17.35425 -17.22116 -16.81519 -16.35435 -15.74685 -15.66367 -15.10481 -14.99524 -14.55075 -14.37667 -14.31777 -14.17229 -13.95398 -13.67668 -13.49106 -13.30420 -13.21117 -12.90394 -12.53014 -12.32990 -12.03342 -11.92219 -11.85900 -11.83505 -11.63223 -11.05457 -10.97489 -10.91930 -10.91137 -10.84227 -10.64266 -10.36175 -10.30141 -10.09629 -10.07143 -9.95748 -9.57893 -9.50255 -8.94008 -8.58693 -7.04681 -5.83845 -3.13034 1.16528 2.16475 2.36769 2.97219 3.37502 3.44327 3.46246 3.59072 3.66496 3.80947 3.98732 4.37558 4.52063 4.70012 4.75683 4.81531 4.98226 5.11287 5.11581 5.16258 5.23018 5.28979 5.33973 5.37888 5.49039 5.53266 5.62293 5.63829 5.75779 5.89793 5.93288 6.01141 6.13036 6.18591 6.24310 6.37352 6.45599 6.50468 6.53685 6.62675 6.68447 6.95008 6.97029 7.06956 7.28678 7.43153 7.65360 7.96130 8.33379 8.59806 9.45510 10.00402 10.36435 11.37954 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002246 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.349142 B =12466.093214 C =13777.630908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.114 3.886 7 N -0.712 5.712 8 C 0.511 3.489 9 O -0.557 6.557 10 C -0.138 4.138 11 C -0.115 4.115 12 C 0.096 3.904 13 N -0.573 5.573 14 C 0.525 3.475 15 O -0.480 6.480 16 C -0.158 4.158 17 C -0.157 4.157 18 C 0.524 3.476 19 O -0.476 6.476 20 N -0.721 5.721 21 C -0.236 4.236 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.410 0.590 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.161 -17.758 8.165 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.059 3.941 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.363 5.363 8 C 0.297 3.703 9 O -0.437 6.437 10 C -0.179 4.179 11 C -0.154 4.154 12 C -0.025 4.025 13 N -0.316 5.316 14 C 0.314 3.686 15 O -0.351 6.351 16 C -0.197 4.197 17 C -0.197 4.197 18 C 0.312 3.688 19 O -0.347 6.347 20 N -0.363 5.363 21 C -0.367 4.367 22 H 0.091 0.909 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.247 0.753 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.443 -17.493 7.722 22.284 hybrid contribution 1.121 0.962 0.391 1.527 sum -10.323 -16.531 8.113 21.110 Atomic orbital electron populations 1.21938 0.96876 1.00947 1.00913 1.21729 0.93532 0.97794 1.00078 1.21817 1.04192 0.94633 0.98986 1.20548 0.86375 0.91182 0.95966 0.92893 1.21722 0.97205 0.93210 0.88961 1.46002 1.48495 1.10946 1.30896 1.20470 0.81395 0.82164 0.86267 1.90659 1.37017 1.68016 1.47972 1.21532 1.02757 0.95326 0.98268 1.21591 1.01569 0.94080 0.98147 1.21896 1.00749 0.78941 1.00889 1.46779 1.26152 1.11600 1.47068 1.20842 0.79213 0.91347 0.77196 1.90796 1.46822 1.60071 1.37461 1.22480 1.01096 0.92687 1.03464 1.22484 0.97035 0.96574 1.03620 1.20858 0.84056 0.86638 0.77217 1.90818 1.22143 1.84899 1.36838 1.42471 0.98744 1.21215 1.73839 1.19239 0.88761 0.96381 1.32299 0.90874 1.24736 0.96494 0.97707 1.01844 1.69671 1.06864 1.29764 1.51368 0.86200 0.80060 0.82138 0.78280 1.20561 1.21941 1.21952 0.93200 0.93573 0.93065 0.91919 0.89509 0.95005 0.94068 0.91718 0.92022 0.75321 0.88220 0.88684 0.90691 0.90533 0.88514 0.88636 0.86069 0.86200 0.86065 0.86157 0.78100 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.84 37.16 0.33 -1.79 16 2 C -0.11 -1.87 2.69 -90.62 -0.24 -2.12 16 3 C -0.14 -2.50 8.26 37.16 0.31 -2.19 16 4 C 0.17 3.11 2.18 -67.93 -0.15 2.96 16 5 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 6 C 0.11 1.94 4.73 -4.04 -0.02 1.92 16 7 N -0.71 -11.72 5.39 -60.29 -0.32 -12.04 16 8 C 0.51 8.31 7.83 -10.99 -0.09 8.23 16 9 O -0.56 -10.84 15.98 5.56 0.09 -10.75 16 10 C -0.14 -1.69 5.70 -27.88 -0.16 -1.85 16 11 C -0.12 -1.39 4.83 -26.73 -0.13 -1.52 16 12 C 0.10 0.95 5.56 -4.04 -0.02 0.93 16 13 N -0.57 -5.31 2.55 -115.34 -0.29 -5.61 16 14 C 0.53 4.53 8.08 -11.08 -0.09 4.44 16 15 O -0.48 -5.86 17.47 5.61 0.10 -5.76 16 16 C -0.16 -0.58 7.03 -26.94 -0.19 -0.77 16 17 C -0.16 -0.61 7.03 -26.94 -0.19 -0.80 16 18 C 0.52 4.69 8.07 -11.09 -0.09 4.60 16 19 O -0.48 -6.14 17.48 5.60 0.10 -6.05 16 20 N -0.72 -16.20 4.44 -53.42 -0.24 -16.44 16 21 C -0.24 -5.89 7.57 -15.06 -0.11 -6.01 16 22 H 0.07 1.80 7.40 -52.49 -0.39 1.41 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -26.51 13.06 55.49 0.72 -25.78 16 25 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.85 6.01 -51.93 -0.31 1.53 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.05 6.71 -51.92 -0.35 0.70 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.41 6.74 8.14 -40.82 -0.33 6.41 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 42 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.10 0.93 7.83 -51.92 -0.41 0.53 16 44 H 0.10 0.87 7.82 -51.93 -0.41 0.47 16 45 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 47 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.38 9.53 7.80 -40.82 -0.32 9.22 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 409.68 15.07 6.17 6.17 Total: -1.00 -33.62 409.68 -7.96 -41.58 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -8.32 Total: 12.71 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.94 Total: 5.64 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.13 Total: -59.87 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.28 Total: -22.56 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.62 -7.96 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568453440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.673 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds