Wall clock time and date at job start Tue Mar 31 2020 22:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 C 1.53011 * 109.46807 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46939 * 180.02562 * 11 10 8 13 13 N 1.46498 * 109.47151 * 180.02562 * 12 11 10 14 14 C 1.33886 * 122.75902 * 269.70910 * 13 12 11 15 15 O 1.21225 * 125.39821 * 359.97438 * 14 13 12 16 16 C 1.51309 * 109.20458 * 179.84105 * 14 13 12 17 17 C 1.54236 * 103.55722 * 0.38493 * 16 14 13 18 18 C 1.33877 * 122.76724 * 89.99746 * 13 12 11 19 19 O 1.21226 * 125.39346 * 359.97438 * 18 13 12 20 20 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 35 35 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 36 36 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 37 37 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 38 38 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 39 39 H 1.09000 * 109.47726 * 299.99386 * 10 8 7 40 40 H 1.08998 * 109.47231 * 60.00064 * 10 8 7 41 41 H 1.09000 * 109.46826 * 299.99728 * 11 10 8 42 42 H 1.08998 * 109.47027 * 60.00117 * 11 10 8 43 43 H 1.09009 * 109.47036 * 299.99777 * 12 11 10 44 44 H 1.09000 * 109.47391 * 59.99604 * 12 11 10 45 45 H 1.09005 * 110.79952 * 241.77918 * 16 14 13 46 46 H 1.09004 * 110.55154 * 118.87537 * 16 14 13 47 47 H 1.08999 * 110.60586 * 241.26380 * 17 16 14 48 48 H 1.08993 * 110.60303 * 118.29524 * 17 16 14 49 49 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 50 50 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0449 -4.7517 1.8268 10 6 2.4073 -4.9302 3.7455 11 6 1.8972 -6.3728 3.7455 12 6 2.5072 -7.1294 4.9271 13 7 2.0193 -8.5108 4.9268 14 6 0.9113 -8.8879 5.5769 15 8 0.1956 -8.1569 6.2273 16 6 0.6923 -10.3705 5.3686 17 6 1.8838 -10.7912 4.4841 18 6 2.6477 -9.5010 4.2811 19 8 3.6669 -9.3826 3.6356 20 7 3.5050 -0.7218 1.2488 21 6 4.1901 0.3528 1.7498 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3498 1.7547 24 7 6.2359 -0.6835 1.2730 25 14 6.5130 1.8124 2.4451 26 1 5.5483 2.8366 2.9205 27 1 7.3617 1.3669 3.5792 28 1 7.3717 2.3968 1.3839 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 0.4436 -2.1651 1.3387 37 1 1.8183 -2.6512 0.3177 38 1 2.7232 -2.4351 2.9844 39 1 3.4936 -4.9287 3.6558 40 1 2.1190 -4.4433 4.6770 41 1 0.8110 -6.3740 3.8355 42 1 2.1852 -6.8600 2.8139 43 1 3.5936 -7.1282 4.8376 44 1 2.2189 -6.6420 5.8585 45 1 -0.2510 -10.5538 4.8540 46 1 0.7168 -10.8986 6.3218 47 1 1.5332 -11.1837 3.5296 48 1 2.5024 -11.5265 4.9985 49 1 3.9897 -1.4834 0.8938 50 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568453440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:36 Heat of formation + Delta-G solvation = -134.751912 kcal Electronic energy + Delta-G solvation = -29458.398480 eV Core-core repulsion = 25291.478508 eV Total energy + Delta-G solvation = -4166.919972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.84392 -40.81328 -39.64472 -38.81557 -37.06743 -35.86696 -35.25094 -34.92242 -33.06498 -32.16432 -29.90235 -28.04100 -27.40210 -27.09016 -25.57644 -23.93522 -23.28411 -22.87447 -21.42150 -20.70442 -20.44529 -19.20903 -18.47863 -18.00544 -17.53649 -17.51617 -17.12004 -16.94383 -16.64394 -15.82322 -15.75902 -15.36931 -15.27815 -15.22568 -14.95523 -14.91256 -14.86838 -14.68019 -14.23957 -13.82639 -13.70824 -13.47881 -13.34594 -13.08731 -12.90704 -12.88334 -12.84764 -12.70630 -12.44996 -12.27418 -12.10378 -11.97325 -11.92893 -11.77100 -11.63129 -11.46076 -11.29652 -11.07691 -11.02313 -10.88162 -10.74450 -10.00246 -8.96476 -7.87918 -5.15039 0.49818 1.48576 1.50704 1.51285 1.58712 1.64899 1.72890 2.32008 2.59368 3.23105 3.28844 3.45278 3.64851 3.66621 3.81329 3.83939 3.86474 3.92806 4.16581 4.24448 4.29318 4.31274 4.31614 4.36403 4.45174 4.56580 4.60410 4.65992 4.77618 4.78003 4.91073 4.91346 4.91986 4.94215 4.97468 5.06306 5.10459 5.14634 5.25510 5.32473 5.53829 5.60955 5.64374 5.76389 5.83631 6.32126 6.32569 6.60378 6.74494 7.25574 7.40156 8.11151 8.36587 9.35092 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002246 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.349142 B =12466.093214 C =13777.630908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.173 3.827 5 H 0.058 0.942 6 C 0.122 3.878 7 N -0.712 5.712 8 C 0.507 3.493 9 O -0.592 6.592 10 C -0.131 4.131 11 C -0.103 4.103 12 C 0.096 3.904 13 N -0.581 5.581 14 C 0.518 3.482 15 O -0.522 6.522 16 C -0.142 4.142 17 C -0.142 4.142 18 C 0.516 3.484 19 O -0.525 6.525 20 N -0.727 5.727 21 C -0.212 4.212 22 H 0.080 0.920 23 C -0.073 4.073 24 N -0.968 5.968 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.298 1.298 28 H -0.303 1.303 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.412 0.588 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.143 0.857 46 H 0.150 0.850 47 H 0.141 0.859 48 H 0.149 0.851 49 H 0.372 0.628 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 -18.570 9.396 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.362 5.362 8 C 0.295 3.705 9 O -0.473 6.473 10 C -0.171 4.171 11 C -0.142 4.142 12 C -0.026 4.026 13 N -0.323 5.323 14 C 0.310 3.690 15 O -0.397 6.397 16 C -0.181 4.181 17 C -0.181 4.181 18 C 0.308 3.692 19 O -0.400 6.400 20 N -0.367 5.367 21 C -0.344 4.344 22 H 0.098 0.902 23 C -0.265 4.265 24 N -0.619 5.619 25 Si 0.789 3.211 26 H -0.190 1.190 27 H -0.226 1.226 28 H -0.231 1.231 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.248 0.752 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.161 0.839 46 H 0.167 0.833 47 H 0.159 0.841 48 H 0.167 0.833 49 H 0.204 0.796 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.381 -18.294 8.973 24.377 hybrid contribution 1.598 1.235 -0.031 2.020 sum -11.783 -17.059 8.942 22.578 Atomic orbital electron populations 1.21845 0.93985 1.01778 1.02200 1.21632 0.95898 0.96873 0.98474 1.21728 1.01678 0.95424 1.00320 1.20682 0.83970 0.92203 0.96763 0.92407 1.21593 0.97894 0.92191 0.88607 1.46023 1.48395 1.11198 1.30613 1.21131 0.80741 0.81921 0.86747 1.90638 1.38673 1.68585 1.49442 1.21559 1.02936 0.95005 0.97632 1.21431 1.00649 0.94132 0.97987 1.21795 1.00658 0.79952 1.00148 1.47016 1.26682 1.11354 1.47260 1.21759 0.78043 0.93354 0.75809 1.90772 1.47946 1.61667 1.39275 1.22604 1.01821 0.88538 1.05115 1.22609 0.96491 0.94015 1.05009 1.21826 0.83479 0.88200 0.75741 1.90792 1.24427 1.85804 1.38934 1.42582 1.00478 1.20118 1.73490 1.19501 0.88751 0.96478 1.29634 0.90231 1.25362 0.97613 0.99876 1.03657 1.69813 1.06341 1.31705 1.54045 0.85288 0.78835 0.79964 0.76994 1.19038 1.22565 1.23140 0.92143 0.92078 0.92500 0.93321 0.93190 0.93063 0.93378 0.90297 0.93724 0.75169 0.87289 0.85950 0.92094 0.92941 0.88488 0.87727 0.83930 0.83250 0.84077 0.83320 0.79629 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.84 71.98 0.64 -2.98 16 2 C -0.11 -3.54 2.69 -10.80 -0.03 -3.56 16 3 C -0.13 -4.63 8.26 71.98 0.59 -4.03 16 4 C 0.17 6.19 2.18 44.99 0.10 6.29 16 5 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 6 C 0.12 4.12 4.73 86.38 0.41 4.53 16 7 N -0.71 -23.33 5.39 -463.05 -2.49 -25.82 16 8 C 0.51 16.59 7.83 87.66 0.69 17.28 16 9 O -0.59 -23.42 15.98 -3.02 -0.05 -23.47 16 10 C -0.13 -3.19 5.70 29.85 0.17 -3.02 16 11 C -0.10 -2.56 4.83 30.60 0.15 -2.41 16 12 C 0.10 1.93 5.56 86.38 0.48 2.41 16 13 N -0.58 -10.55 2.55 -756.66 -1.93 -12.48 16 14 C 0.52 8.33 8.08 87.99 0.71 9.04 16 15 O -0.52 -12.51 17.47 -2.86 -0.05 -12.56 16 16 C -0.14 -0.57 7.03 30.46 0.21 -0.36 16 17 C -0.14 -0.66 7.03 30.46 0.21 -0.44 16 18 C 0.52 8.87 8.07 87.99 0.71 9.58 16 19 O -0.53 -13.82 17.48 -2.86 -0.05 -13.87 16 20 N -0.73 -32.82 4.44 -322.93 -1.43 -34.26 16 21 C -0.21 -10.55 7.57 84.04 0.64 -9.91 16 22 H 0.08 3.83 7.40 -2.91 -0.02 3.81 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 24 N -0.97 -56.60 13.06 21.65 0.28 -56.32 16 25 Si 0.96 44.33 29.55 68.60 2.03 46.36 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.41 6.55 -2.39 -0.02 1.40 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 2.09 6.01 -2.39 -0.01 2.08 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 2.47 6.71 -2.38 -0.02 2.45 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.41 13.39 8.14 -92.71 -0.75 12.64 16 39 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 42 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 43 H 0.10 1.93 7.83 -2.38 -0.02 1.91 16 44 H 0.10 1.89 7.82 -2.39 -0.02 1.87 16 45 H 0.14 0.09 8.14 -2.38 -0.02 0.07 16 46 H 0.15 -0.16 8.14 -2.38 -0.02 -0.18 16 47 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.15 -0.06 8.14 -2.39 -0.02 -0.07 16 49 H 0.37 18.84 7.80 -92.71 -0.72 18.11 16 50 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -76.19 409.68 1.92 -74.26 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -0.52 Total: 39.20 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 6.14 Total: 18.94 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -5.58 Total: -128.88 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -0.15 Total: -49.89 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -76.19 1.92 -74.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568453440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.487 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds