Wall clock time and date at job start Tue Mar 31 2020 22:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47145 * 2 1 4 4 C 1.52996 * 109.47406 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47355 * 300.00200 * 4 2 1 6 6 C 1.53001 * 109.47372 * 179.97438 * 4 2 1 7 7 N 1.46493 * 109.47084 * 184.99895 * 6 4 2 8 8 C 1.34784 * 119.99864 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 6 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 6 11 11 C 1.53001 * 109.47168 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 8 13 13 N 1.46497 * 109.47302 * 180.02562 * 12 11 10 14 14 C 1.33876 * 122.76133 * 269.71508 * 13 12 11 15 15 O 1.21230 * 125.39840 * 359.97424 * 14 13 12 16 16 C 1.51318 * 109.20911 * 179.83966 * 14 13 12 17 17 C 1.54229 * 103.55093 * 0.38459 * 16 14 13 18 18 C 1.33879 * 122.76437 * 89.99883 * 13 12 11 19 19 O 1.21225 * 125.39419 * 359.97438 * 18 13 12 20 20 N 1.46505 * 109.47008 * 59.99731 * 4 2 1 21 21 C 1.36930 * 120.00245 * 275.00136 * 20 4 2 22 22 H 1.07998 * 120.00090 * 0.02562 * 21 20 4 23 23 C 1.38813 * 120.00309 * 180.02562 * 21 20 4 24 24 N 1.31614 * 120.00508 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99662 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46933 * 90.00291 * 25 23 21 27 27 H 1.48507 * 109.47019 * 209.99970 * 25 23 21 28 28 H 1.48492 * 109.47185 * 330.00483 * 25 23 21 29 29 H 1.08995 * 109.47015 * 299.99809 * 1 2 3 30 30 H 1.08998 * 109.46978 * 59.99358 * 1 2 3 31 31 H 1.08994 * 109.47281 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46865 * 240.00457 * 2 1 3 33 33 H 1.08996 * 109.46839 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.46871 * 300.00542 * 3 2 1 35 35 H 1.09000 * 109.46595 * 60.00426 * 3 2 1 36 36 H 1.09007 * 109.46593 * 65.00152 * 6 4 2 37 37 H 1.09006 * 109.47216 * 305.00611 * 6 4 2 38 38 H 0.97000 * 120.00740 * 359.72857 * 7 6 4 39 39 H 1.08998 * 109.47224 * 299.99701 * 10 8 7 40 40 H 1.09002 * 109.47054 * 60.00213 * 10 8 7 41 41 H 1.09000 * 109.47339 * 299.99895 * 11 10 8 42 42 H 1.09002 * 109.46926 * 60.00175 * 11 10 8 43 43 H 1.09000 * 109.46966 * 300.00313 * 12 11 10 44 44 H 1.09002 * 109.46807 * 60.00291 * 12 11 10 45 45 H 1.08995 * 110.79922 * 241.77823 * 16 14 13 46 46 H 1.09004 * 110.54947 * 118.86735 * 16 14 13 47 47 H 1.08998 * 110.60916 * 241.25772 * 17 16 14 48 48 H 1.09001 * 110.60992 * 118.29469 * 17 16 14 49 49 H 0.97003 * 119.99576 * 94.99758 * 20 4 2 50 50 H 0.96998 * 120.00686 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0583 -1.5141 2.3802 8 6 5.3835 -1.6554 2.5819 9 8 6.1716 -1.1306 1.8239 10 6 5.8858 -2.4652 3.7493 11 6 7.4158 -2.4669 3.7482 12 6 7.9258 -3.2886 4.9338 13 7 9.3908 -3.2896 4.9330 14 6 10.1143 -4.2188 4.2963 15 8 9.6623 -5.1470 3.6607 16 6 11.5856 -3.9251 4.4927 17 6 11.5870 -2.6573 5.3709 18 6 10.1163 -2.3647 5.5737 19 8 9.6663 -1.4390 6.2142 20 7 1.5517 -2.1025 1.2491 21 6 0.3102 -2.3898 1.7503 22 1 -0.3091 -1.5981 2.1452 23 6 -0.1523 -3.6986 1.7507 24 7 -1.3458 -3.9747 2.2320 25 14 0.9187 -5.0679 1.0669 26 1 1.7608 -5.6276 2.1545 27 1 0.0555 -6.1393 0.5080 28 1 1.7912 -4.5254 -0.0052 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9337 0.3019 1.3382 37 1 3.9331 -1.1563 0.3173 38 1 3.4281 -1.9334 2.9866 39 1 5.5233 -2.0263 4.6788 40 1 5.5217 -3.4891 3.6646 41 1 7.7780 -2.9060 2.8187 42 1 7.7803 -1.4430 3.8326 43 1 7.5636 -2.8490 5.8631 44 1 7.5614 -4.3124 4.8498 45 1 12.0724 -3.7303 3.5371 46 1 12.0748 -4.7505 5.0100 47 1 12.0744 -1.8318 4.8522 48 1 12.0744 -2.8527 6.3261 49 1 2.1078 -2.8135 0.8940 50 1 -1.6692 -4.8892 2.2320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568453445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:40 Heat of formation + Delta-G solvation = -107.150463 kcal Electronic energy + Delta-G solvation = -29563.403394 eV Core-core repulsion = 25397.680310 eV Total energy + Delta-G solvation = -4165.723084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.23954 -39.59537 -38.92830 -37.46003 -36.31304 -35.15961 -33.93932 -33.16011 -32.38685 -30.85733 -28.72397 -27.03449 -26.62282 -26.22422 -23.77398 -22.78256 -22.58514 -21.52882 -20.22007 -19.85929 -19.41350 -17.91089 -17.53714 -17.36304 -16.87821 -16.47193 -15.88092 -15.77234 -15.22920 -15.08596 -14.60803 -14.43957 -14.37211 -14.20744 -14.10170 -13.80291 -13.60858 -13.27854 -13.14845 -12.93817 -12.61393 -12.53390 -12.25416 -12.05706 -11.96153 -11.88740 -11.66171 -11.23743 -11.11258 -11.01926 -10.97812 -10.90185 -10.68111 -10.42168 -10.25762 -10.17819 -10.14129 -10.02889 -9.65132 -9.51566 -8.96886 -8.74691 -7.36596 -5.84388 -3.20551 1.10726 2.10081 2.30710 2.82730 3.30972 3.36491 3.40835 3.45160 3.61133 3.75245 3.93487 4.32534 4.51993 4.61825 4.64682 4.71569 4.93523 5.04238 5.06429 5.10681 5.10958 5.14729 5.18366 5.25761 5.37272 5.41267 5.51696 5.57090 5.66837 5.75978 5.81872 5.89304 6.03299 6.06988 6.16749 6.28412 6.37387 6.44010 6.48590 6.56197 6.61859 6.82662 6.91041 6.99056 7.31620 7.37090 7.80002 7.91526 8.33794 8.44694 9.11766 9.84096 10.03549 11.33170 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.002396 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.030132 B =11681.034524 C =12994.376047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.175 3.825 5 H 0.063 0.937 6 C 0.110 3.890 7 N -0.717 5.717 8 C 0.510 3.490 9 O -0.554 6.554 10 C -0.140 4.140 11 C -0.116 4.116 12 C 0.096 3.904 13 N -0.573 5.573 14 C 0.524 3.476 15 O -0.478 6.478 16 C -0.158 4.158 17 C -0.157 4.157 18 C 0.525 3.475 19 O -0.479 6.479 20 N -0.746 5.746 21 C -0.241 4.241 22 H 0.095 0.905 23 C 0.008 3.992 24 N -0.930 5.930 25 Si 0.879 3.121 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.410 0.590 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.362 0.638 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.809 3.384 6.131 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.065 3.935 5 H 0.081 0.919 6 C -0.014 4.014 7 N -0.369 5.369 8 C 0.296 3.704 9 O -0.433 6.433 10 C -0.180 4.180 11 C -0.154 4.154 12 C -0.025 4.025 13 N -0.316 5.316 14 C 0.313 3.687 15 O -0.348 6.348 16 C -0.197 4.197 17 C -0.197 4.197 18 C 0.314 3.686 19 O -0.350 6.350 20 N -0.389 5.389 21 C -0.371 4.371 22 H 0.112 0.888 23 C -0.189 4.189 24 N -0.578 5.578 25 Si 0.709 3.291 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.246 0.754 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.195 0.805 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 24.587 3.749 5.712 25.519 hybrid contribution 0.156 -1.299 -0.329 1.350 sum 24.742 2.450 5.383 25.439 Atomic orbital electron populations 1.21821 0.94378 1.04228 0.99222 1.21702 0.97296 0.94538 0.99516 1.21936 1.00382 0.97196 1.01172 1.20532 0.89193 0.87111 0.96681 0.91943 1.21782 0.95570 0.95235 0.88837 1.46051 1.06804 1.53114 1.30893 1.20508 0.82515 0.80992 0.86341 1.90670 1.55538 1.49276 1.47785 1.21549 0.96186 1.01946 0.98335 1.21596 0.94376 1.01325 0.98136 1.21888 0.76673 1.03070 1.00865 1.46775 1.09656 1.27527 1.47662 1.20862 0.90100 0.80684 0.77063 1.90814 1.77777 1.29071 1.37186 1.22482 0.93964 0.99557 1.03723 1.22484 0.93984 0.99690 1.03551 1.20855 0.90085 0.80592 0.77087 1.90800 1.77884 1.28720 1.37633 1.42848 1.18551 1.02625 1.74910 1.19041 0.91519 0.94060 1.32462 0.88764 1.24654 0.96399 0.96894 1.00904 1.69684 1.17622 1.19201 1.51263 0.86651 0.80179 0.83149 0.79094 1.21127 1.21832 1.20391 0.93762 0.94978 0.89314 0.92059 0.93107 0.93418 0.92994 0.91246 0.92015 0.75357 0.88414 0.88376 0.90566 0.90561 0.88569 0.88548 0.86039 0.86150 0.86059 0.86130 0.80532 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.26 37.16 0.31 -2.21 16 2 C -0.11 -1.80 2.69 -90.62 -0.24 -2.04 16 3 C -0.15 -2.04 8.84 37.16 0.33 -1.71 16 4 C 0.17 3.06 2.18 -67.93 -0.15 2.91 16 5 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 6 C 0.11 1.76 4.73 -4.04 -0.02 1.74 16 7 N -0.72 -10.98 5.39 -60.29 -0.32 -11.30 16 8 C 0.51 7.76 7.83 -10.98 -0.09 7.68 16 9 O -0.55 -10.20 15.98 5.56 0.09 -10.11 16 10 C -0.14 -1.58 5.70 -27.89 -0.16 -1.74 16 11 C -0.12 -1.31 4.83 -26.73 -0.13 -1.44 16 12 C 0.10 0.90 5.56 -4.04 -0.02 0.87 16 13 N -0.57 -5.03 2.55 -115.34 -0.29 -5.33 16 14 C 0.52 4.44 8.08 -11.08 -0.09 4.35 16 15 O -0.48 -5.91 17.47 5.60 0.10 -5.81 16 16 C -0.16 -0.55 7.03 -26.94 -0.19 -0.74 16 17 C -0.16 -0.53 7.03 -26.94 -0.19 -0.72 16 18 C 0.52 4.31 8.08 -11.08 -0.09 4.22 16 19 O -0.48 -5.66 17.48 5.60 0.10 -5.57 16 20 N -0.75 -15.79 4.25 -53.43 -0.23 -16.02 16 21 C -0.24 -6.11 8.05 -15.06 -0.12 -6.23 16 22 H 0.09 2.58 7.62 -52.49 -0.40 2.18 16 23 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 24 N -0.93 -27.72 13.97 55.49 0.78 -26.95 16 25 Si 0.88 21.16 27.74 -169.99 -4.71 16.45 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.92 6.01 -51.93 -0.31 1.61 16 32 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 33 H 0.05 0.66 6.55 -51.93 -0.34 0.32 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.41 6.17 8.14 -40.82 -0.33 5.84 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 42 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 43 H 0.10 0.83 7.83 -51.93 -0.41 0.42 16 44 H 0.10 0.87 7.82 -51.93 -0.41 0.46 16 45 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.12 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.12 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.12 0.17 8.14 -51.93 -0.42 -0.26 16 49 H 0.36 7.84 5.66 -40.82 -0.23 7.61 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 406.57 15.07 6.13 6.13 Total: -1.00 -34.68 406.57 -7.60 -42.28 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.28 Total: 11.15 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.95 Total: 5.08 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.07 Total: -59.60 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.28 Total: -21.48 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.68 -7.60 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568453445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.872 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds