Wall clock time and date at job start Wed Apr 1 2020 00:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 H 1.08999 * 109.47264 * 304.99590 * 3 2 1 5 5 C 1.50700 * 109.46980 * 184.99622 * 3 2 1 6 6 O 1.21278 * 120.00435 * 240.00301 * 5 3 2 7 7 N 1.34780 * 119.99996 * 60.00252 * 5 3 2 8 8 C 1.46497 * 120.00127 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47346 * 179.97438 * 8 7 5 10 10 O 1.42901 * 110.91709 * 297.55667 * 9 8 7 11 11 C 1.55151 * 111.00665 * 173.64685 * 9 8 7 12 12 C 1.54326 * 102.94313 * 206.42351 * 11 9 8 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.36936 * 125.64933 * 181.08907 * 13 12 11 15 15 H 1.08001 * 120.00149 * 179.97438 * 14 13 12 16 16 C 1.38822 * 119.99936 * 359.96176 * 14 13 12 17 17 N 1.31623 * 119.99690 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00114 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46839 * 60.00190 * 18 16 14 20 20 H 1.48493 * 109.47110 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47126 * 300.00275 * 18 16 14 22 22 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 23 23 N 1.46503 * 109.47207 * 64.99869 * 3 2 1 24 24 C 1.46763 * 124.34728 * 239.99825 * 23 3 2 25 25 C 1.54482 * 105.47240 * 197.01794 * 24 23 3 26 26 C 1.54632 * 101.76161 * 334.58468 * 25 24 23 27 27 C 1.34422 * 124.34690 * 59.70014 * 23 3 2 28 28 O 1.21279 * 124.94346 * 359.56547 * 27 23 3 29 29 H 1.09002 * 109.47299 * 60.00235 * 1 2 3 30 30 H 1.09000 * 109.47576 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47772 * 300.00421 * 1 2 3 32 32 H 1.09000 * 109.47084 * 239.99851 * 2 1 3 33 33 H 1.09003 * 109.46774 * 119.99758 * 2 1 3 34 34 H 0.97004 * 119.99865 * 359.97438 * 7 5 3 35 35 H 1.08999 * 109.47083 * 59.99734 * 8 7 5 36 36 H 1.09004 * 109.47152 * 299.99617 * 8 7 5 37 37 H 0.96693 * 114.00449 * 62.44278 * 10 9 8 38 38 H 1.09000 * 110.72429 * 324.79305 * 11 9 8 39 39 H 1.09003 * 110.71831 * 88.06427 * 11 9 8 40 40 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 41 41 H 1.09000 * 109.88276 * 141.61163 * 12 11 9 42 42 H 0.97002 * 119.99882 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.36865 * 217.03325 * 22 13 12 44 44 H 1.09001 * 110.37117 * 94.70643 * 22 13 12 45 45 H 1.09002 * 110.24811 * 316.01513 * 24 23 3 46 46 H 1.08995 * 110.24563 * 77.92903 * 24 23 3 47 47 H 1.08997 * 110.97060 * 92.70210 * 25 24 23 48 48 H 1.09000 * 110.96836 * 216.46922 * 25 24 23 49 49 H 1.08995 * 110.48669 * 143.48112 * 26 25 24 50 50 H 1.09005 * 110.48909 * 266.11829 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 8 4.2216 1.9434 0.7478 7 7 4.1298 0.8911 -1.2031 8 6 5.5898 0.8923 -1.3231 9 6 5.9947 0.2079 -2.6302 10 8 5.5816 -1.1601 -2.6390 11 6 7.5225 0.3291 -2.8714 12 6 7.6377 0.2439 -4.4080 13 7 6.3321 0.6263 -4.9654 14 6 6.0112 0.6593 -6.2962 15 1 5.0196 0.9552 -6.6055 16 6 6.9606 0.3129 -7.2479 17 7 8.1690 -0.0479 -6.8710 18 14 6.5228 0.3573 -9.0633 19 1 6.1217 1.7360 -9.4421 20 1 7.7017 -0.0542 -9.8670 21 1 5.3968 -0.5751 -9.3239 22 6 5.4253 0.9676 -3.8543 23 7 1.6523 2.0975 1.2518 24 6 0.8075 3.2948 1.3328 25 6 1.0290 3.8602 2.7533 26 6 1.4530 2.5944 3.5337 27 6 2.0201 1.6757 2.4740 28 8 2.7085 0.7019 2.6948 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3635 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5862 0.4915 -1.9000 35 1 6.0240 0.3530 -0.4813 36 1 5.9536 1.9199 -1.3229 37 1 4.6237 -1.2821 -2.5894 38 1 7.8954 1.2871 -2.5092 39 1 8.0543 -0.4966 -2.3985 40 1 7.8835 -0.7755 -4.7054 41 1 8.4069 0.9308 -4.7608 42 1 8.8326 -0.2896 -7.5360 43 1 4.4126 0.6291 -4.0734 44 1 5.4359 2.0423 -3.6723 45 1 1.1151 4.0249 0.5841 46 1 -0.2397 3.0279 1.1907 47 1 1.8244 4.6054 2.7569 48 1 0.1053 4.2757 3.1562 49 1 2.2127 2.8403 4.2756 50 1 0.5884 2.1326 4.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569764720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:05 Heat of formation + Delta-G solvation = -115.896457 kcal Electronic energy + Delta-G solvation = -30995.755522 eV Core-core repulsion = 26829.653184 eV Total energy + Delta-G solvation = -4166.102339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.91171 -40.71763 -39.66992 -37.39655 -36.77326 -35.93109 -35.26006 -34.00021 -31.90082 -31.46029 -30.04699 -28.44954 -28.24376 -27.14673 -25.17779 -23.31211 -22.70876 -22.50718 -21.70807 -21.43976 -20.19284 -18.93492 -18.69751 -17.94123 -17.63785 -17.34183 -16.72067 -16.63920 -16.34550 -16.01988 -15.78271 -15.58590 -15.36121 -15.06369 -14.86525 -14.54878 -14.42185 -14.33950 -13.96113 -13.88004 -13.73566 -13.49236 -13.29886 -13.26571 -12.97073 -12.91976 -12.72953 -12.40457 -12.37093 -12.14196 -12.11524 -12.05406 -11.95914 -11.82813 -11.79618 -11.72684 -11.06528 -10.90305 -10.67854 -10.64292 -10.20825 -9.66350 -8.89468 -7.84074 -5.20012 1.46434 1.50157 1.50963 1.56365 1.56970 1.93515 2.26837 2.49825 3.14929 3.33900 3.40938 3.46404 3.59950 3.66086 3.72216 3.84417 3.91146 3.95667 3.97732 4.10188 4.21843 4.36903 4.43864 4.48776 4.56620 4.63388 4.69382 4.70575 4.79264 4.80825 4.90087 4.90150 4.93506 5.05639 5.06188 5.10408 5.15884 5.25365 5.27966 5.36319 5.44314 5.57261 5.62036 5.74998 6.18484 6.19524 6.40715 6.79510 7.08857 7.12675 7.28658 7.76631 8.41086 9.26669 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.002479 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.247966 B =11291.740800 C =11716.913219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C 0.143 3.857 4 H 0.152 0.848 5 C 0.499 3.501 6 O -0.568 6.568 7 N -0.713 5.713 8 C 0.123 3.877 9 C 0.122 3.878 10 O -0.553 6.553 11 C -0.123 4.123 12 C 0.192 3.808 13 N -0.621 5.621 14 C -0.241 4.241 15 H 0.089 0.911 16 C -0.070 4.070 17 N -0.954 5.954 18 Si 0.981 3.019 19 H -0.275 1.275 20 H -0.299 1.299 21 H -0.275 1.275 22 C 0.116 3.884 23 N -0.606 5.606 24 C 0.097 3.903 25 C -0.121 4.121 26 C -0.152 4.152 27 C 0.507 3.493 28 O -0.577 6.577 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.412 0.588 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.383 0.617 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.007 0.993 41 H 0.009 0.991 42 H 0.246 0.754 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.124 0.876 49 H 0.093 0.907 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.210 7.632 17.850 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.036 3.964 4 H 0.169 0.831 5 C 0.285 3.715 6 O -0.446 6.446 7 N -0.367 5.367 8 C -0.002 4.002 9 C 0.080 3.920 10 O -0.360 6.360 11 C -0.162 4.162 12 C 0.066 3.934 13 N -0.347 5.347 14 C -0.370 4.370 15 H 0.107 0.893 16 C -0.263 4.263 17 N -0.603 5.603 18 Si 0.809 3.191 19 H -0.200 1.200 20 H -0.225 1.225 21 H -0.201 1.201 22 C -0.010 4.010 23 N -0.339 5.339 24 C -0.024 4.024 25 C -0.158 4.158 26 C -0.192 4.192 27 C 0.297 3.703 28 O -0.457 6.457 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.249 0.751 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.232 0.768 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.094 0.906 48 H 0.142 0.858 49 H 0.112 0.888 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.623 7.337 18.283 28.520 hybrid contribution 0.107 -0.404 -1.374 1.436 sum -20.515 6.933 16.909 27.475 Atomic orbital electron populations 1.21669 0.92517 1.02631 1.02779 1.21878 0.98799 0.93155 1.03336 1.21054 0.89211 0.97061 0.89033 0.83083 1.21551 0.92046 0.77083 0.80864 1.90698 1.66405 1.46576 1.40939 1.45779 1.07193 1.60445 1.23325 1.21646 0.80935 1.00984 0.96602 1.22387 0.95699 0.81914 0.91982 1.86609 1.28407 1.24252 1.96717 1.22801 0.93618 1.02728 0.97011 1.20805 0.87309 0.96797 0.88460 1.44628 1.09496 1.79015 1.01523 1.19453 0.97480 1.38334 0.81697 0.89338 1.25717 0.96022 1.01971 1.02583 1.70200 1.04517 1.52653 1.32932 0.85116 0.76545 0.78138 0.79307 1.20044 1.22502 1.20080 1.22333 0.94346 0.96931 0.87376 1.48129 1.51021 1.30282 1.04481 1.22464 0.95411 0.85326 0.99235 1.22624 1.04400 0.95671 0.93122 1.22363 1.03372 0.96396 0.97060 1.21600 0.78239 0.84711 0.85764 1.90673 1.39679 1.30674 1.84632 0.90229 0.92043 0.92896 0.88826 0.93269 0.75128 0.91898 0.90717 0.76823 0.88917 0.90315 0.97427 0.97256 0.94515 0.92183 0.94698 0.89381 0.87932 0.90583 0.85772 0.88829 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.80 71.98 0.71 -0.77 16 2 C -0.13 -2.13 5.30 30.59 0.16 -1.97 16 3 C 0.14 2.47 2.67 44.24 0.12 2.59 16 4 H 0.15 1.46 8.07 -2.39 -0.02 1.44 16 5 C 0.50 12.97 6.86 87.66 0.60 13.57 16 6 O -0.57 -20.37 14.92 10.51 0.16 -20.22 16 7 N -0.71 -16.44 5.06 -463.07 -2.34 -18.78 16 8 C 0.12 3.53 4.90 86.38 0.42 3.95 16 9 C 0.12 4.05 0.94 -9.40 -0.01 4.04 16 10 O -0.55 -18.57 13.18 -148.98 -1.96 -20.53 16 11 C -0.12 -4.72 6.16 31.78 0.20 -4.52 16 12 C 0.19 9.75 5.37 86.73 0.47 10.22 16 13 N -0.62 -31.35 3.39 -691.97 -2.35 -33.70 16 14 C -0.24 -13.25 10.28 84.04 0.86 -12.38 16 15 H 0.09 4.52 7.83 -2.91 -0.02 4.49 16 16 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 17 N -0.95 -58.41 10.31 21.66 0.22 -58.18 16 18 Si 0.98 45.46 29.55 68.60 2.03 47.49 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.12 4.30 5.92 86.86 0.51 4.82 16 23 N -0.61 -10.60 2.07 -798.20 -1.66 -12.25 16 24 C 0.10 0.78 7.30 86.83 0.63 1.41 16 25 C -0.12 -0.84 7.18 31.65 0.23 -0.62 16 26 C -0.15 -2.07 6.86 30.59 0.21 -1.86 16 27 C 0.51 12.17 6.68 87.90 0.59 12.75 16 28 O -0.58 -20.23 15.36 10.50 0.16 -20.06 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.59 7.75 -2.39 -0.02 0.57 16 32 H 0.09 1.18 7.43 -2.39 -0.02 1.17 16 33 H 0.05 1.19 6.60 -2.39 -0.02 1.18 16 34 H 0.41 7.06 6.67 -92.71 -0.62 6.44 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 37 H 0.38 9.24 8.23 -74.06 -0.61 8.63 16 38 H 0.09 3.16 8.01 -2.39 -0.02 3.14 16 39 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.01 0.44 7.38 -2.39 -0.02 0.42 16 41 H 0.01 0.52 7.51 -2.39 -0.02 0.51 16 42 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.06 1.97 7.97 -2.39 -0.02 1.95 16 44 H 0.04 1.28 8.04 -2.39 -0.02 1.26 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -87.68 396.20 0.14 -87.53 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.28 Total: 21.01 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 6.16 Total: 27.70 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -6.13 Total: -122.91 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -1.65 Total: -60.81 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -87.68 0.14 -87.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569764720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.363 kcal (2) G-P(sol) polarization free energy of solvation -87.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds